RNA id: XM_026910854.2


Basic Information

Item Value
RNA id XM_026910854.2
length 571
RNA type mRNA
GC content 0.47
exon number 3
gene id polr2l
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26185862 ~ 26212115 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTTCCGTGAGCACAGCAACCCGGAAGCGACGCAttttcagcgtgtgtgtgtgtgtttgtgtgttttctcgTCTTTTCTCGTCTTTTCTCGAAGCGTGAAGAAGGTGAAGAAAGGTTTTTTGAAAGATTTTTGCTCATATAGTCGGACTTGCAGAACTTCACTATGATCATCCCCATCCGCTGCTTCACCTGTGGGAAGATTGTAGGGAACAAGTGGGAGGCTTACCTGGGTCTCCTACAGGCAGAATACACAGAAGgAGACGCTCTGGACGCCCTGGGCTTGAAGAGGTACTGCTGTCGCAGGATGCTGCTCTCTCACGTCGATCTGATCGAGAAACTGCTGAACTACGCGCCGCTGGAGAAATAAGACTTAAATggcttcatctctctctctctctctctctctctgtgtgtgtctctgtctctaaacCGTTCTGATTGTGTTCACTGCACTGCCTCCTGTGGCTTCTTTACTCTACTGAACACATCCATTCGTTACACGCACAGGACGCAGTGCAGTGCTCGTATTTCCTCTTctgatgttttataaataaagtagtAAAGACGACA

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0006356 regulation of transcription by RNA polymerase I biological_process
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0006368 transcription elongation from RNA polymerase II promoter biological_process
GO:0006370 7-methylguanosine mRNA capping biological_process
GO:0006385 transcription elongation from RNA polymerase III promoter biological_process
GO:0006386 termination of RNA polymerase III transcription biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0050434 positive regulation of viral transcription biological_process
GO:0032481 positive regulation of type I interferon production biological_process
GO:0006283 transcription-coupled nucleotide-excision repair biological_process
GO:0005829 cytosol cellular_component
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0005666 RNA polymerase III complex cellular_component
GO:0005736 RNA polymerase I complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0001054 RNA polymerase I activity molecular_function
GO:0001055 RNA polymerase II activity molecular_function
GO:0001056 RNA polymerase III activity molecular_function

KEGG:

id description
K03007 RPB10, POLR2L; DNA-directed RNA polymerases I, II, and III subunit RPABC5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222731 lncRNA upstream 43756 26153529 ~ 26166792 (+) True G188179
TU222738 lncRNA upstream 45792 26161314 ~ 26164756 (+) True G188184
TU222739 lncRNA upstream 45792 26162308 ~ 26164756 (+) False G188184
TU222720 lncRNA upstream 100700 26109623 ~ 26109848 (+) True G188168
TU222672 lncRNA upstream 217145 25988798 ~ 25993403 (+) True G188127
TU222764 lncRNA downstream 6816 26218931 ~ 26222921 (+) True G188202
TU222766 lncRNA downstream 8320 26220435 ~ 26222921 (+) False G188202
XR_004579054.1 lncRNA downstream 207491 26419606 ~ 26420373 (+) True LOC117598393
XR_004579058.1 lncRNA downstream 208259 26420374 ~ 26421499 (+) True LOC117598395
TU223002 lncRNA downstream 215253 26427368 ~ 26575308 (+) False G188395
XM_034308615.1 mRNA upstream 71929 26099524 ~ 26138619 (+) False helz2a
XM_026910023.2 mRNA upstream 71929 26119408 ~ 26138619 (+) True helz2a
XM_034308692.1 mRNA upstream 115410 26083657 ~ 26095138 (+) True slc38a7
XM_034308780.1 mRNA upstream 147892 26039386 ~ 26062656 (+) True LOC113523928
XM_026909993.2 mRNA upstream 279959 25924180 ~ 25930589 (+) True tollip
XM_026910859.2 mRNA downstream 11702 26223817 ~ 26227916 (+) True LOC113524556
XM_034308614.1 mRNA downstream 28957 26241072 ~ 26244720 (+) True LOC117598406
XM_026910874.2 mRNA downstream 48415 26260530 ~ 26352035 (+) True syt7b
XM_026910875.2 mRNA downstream 48416 26260531 ~ 26352035 (+) False syt7b
XM_026910876.2 mRNA downstream 48417 26260532 ~ 26352035 (+) False syt7b
TU222716 other upstream 538 26206942 ~ 26210010 (+) True G188164
TU222375 other upstream 617045 25531745 ~ 25593503 (+) False LOC113523924
trnar-acg_9 other upstream 704053 25506423 ~ 25506495 (+) True trnar-acg_9
TU221326 other upstream 1999823 24207893 ~ 24210725 (+) True glrx2
TU221328 other upstream 1999823 24207893 ~ 24210725 (+) False glrx2
TU222884 other downstream 48562 26260677 ~ 26318575 (+) False syt7b

Expression Profile