RNA id: TU222738



Basic Information


Item Value
RNA id TU222738
length 269
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G188184
representative True

Chromosome Information


Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26161314 ~ 26164756 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


tctctctctctgtcctgtgtttatctctctctctctctctctctctgtcctgtgtttatctctctctctctctctctgtcctgtgtttatctctctctctctctctgtgtcctgtgtttatctctctctctctctctctgtcctgtgtttatctctctctctgtgtcctgtgtttatctctctctctgtgtcctgtgtttatctctctctctctctgtcctgtgtttatctctctctctctgtgtcctgtgtttatctctctctctctc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU222720 lncRNA upstream 51466 26109623 ~ 26109848 (+) True G188168
TU222672 lncRNA upstream 167911 25988798 ~ 25993403 (+) True G188127
TU222482 lncRNA upstream 211342 25941892 ~ 25949972 (+) True G187970
TU222471 lncRNA upstream 241709 25918551 ~ 25919605 (+) True G187961
TU222386 lncRNA upstream 410682 25747110 ~ 25750632 (+) True G187895
TU222764 lncRNA downstream 54175 26218931 ~ 26222921 (+) True G188202
TU222766 lncRNA downstream 55679 26220435 ~ 26222921 (+) False G188202
XR_004579054.1 lncRNA downstream 254850 26419606 ~ 26420373 (+) True LOC117598393
XR_004579058.1 lncRNA downstream 255618 26420374 ~ 26421499 (+) True LOC117598395
TU223002 lncRNA downstream 262612 26427368 ~ 26575308 (+) False G188395
XM_034308615.1 mRNA upstream 22695 26099524 ~ 26138619 (+) False helz2a
XM_026910023.2 mRNA upstream 22695 26119408 ~ 26138619 (+) True helz2a
XM_034308692.1 mRNA upstream 66176 26083657 ~ 26095138 (+) True slc38a7
XM_034308780.1 mRNA upstream 98658 26039386 ~ 26062656 (+) True LOC113523928
XM_026909993.2 mRNA upstream 230725 25924180 ~ 25930589 (+) True tollip
XM_026910854.2 mRNA downstream 45792 26210548 ~ 26212115 (+) True polr2l
XM_026910859.2 mRNA downstream 59061 26223817 ~ 26227916 (+) True LOC113524556
XM_034308614.1 mRNA downstream 76316 26241072 ~ 26244720 (+) True LOC117598406
XM_026910874.2 mRNA downstream 95774 26260530 ~ 26352035 (+) True syt7b
XM_026910875.2 mRNA downstream 95775 26260531 ~ 26352035 (+) False syt7b
TU222375 other upstream 567811 25531745 ~ 25593503 (+) False LOC113523924
trnar-acg_9 other upstream 654819 25506423 ~ 25506495 (+) True trnar-acg_9
TU221326 other upstream 1950589 24207893 ~ 24210725 (+) True glrx2
TU221328 other upstream 1950589 24207893 ~ 24210725 (+) False glrx2
trnaq-uug_6 other upstream 2214251 23946992 ~ 23947063 (+) True trnaq-uug_6
TU222713 other downstream 21106 26185862 ~ 26212109 (+) False polr2l
TU222716 other downstream 42186 26206942 ~ 26210010 (+) True G188164
TU222712 other downstream 45803 26210559 ~ 26212109 (+) False polr2l
TU222884 other downstream 95921 26260677 ~ 26318575 (+) False syt7b

Expression Profile