RNA id: TU222764


Basic Information

Item Value
RNA id TU222764
length 1747
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G188202
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26218931 ~ 26222921 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tccccacagccacgctccaacatctagtggaaagcttcccagaagagtggaggttattatagcagcaaacacacggggaataaatctctAATGAGATGTTGCTGTGCTTTACCAGAGTTGAGCTTCGCTACTTGTAACGTCACATCACACCTCATTTGCATGAACCAAATGGAAAAACCTCAGTGTTAACCCAGAGGAAATGACCGGTCACTAATCATTTAGTGTCAGCGTTGAAAGCTCACCCAGGTAAAGTTGCCGACGTAGACAGAGAACCGTTTTCCTCCGCCAGATTCCGCCACCGCTGCTCCTTTCCCATCCTCCTTAGAGTCCAGCTTTCCCAGAGTCCTCTCGCTGTCCACCGATCCAGTTAACACATCGTCATAAAGAGCGTCAGCTTCTGCCTCCAAAGAGTCTCCACCCTgcagcacacgcacacacacacacacacacacacacacacacacacatttccccaCTCATCTGTACAGGTTTGCTAGAGGAAATGGCACTGCGCTAGCGATGATGTCACGGATCTGATTCCTATCAGCAGGGGTTTCACCTGTTACCTCGGTGAGTGACTCCCAACTACTTTGGCAAGAAAAGTGATTTCTGGTGGAATGAAACTAGTTCAGGCAAAATTCTTGCAGTCGCATCAAACTGTCTGCTGAGCCTGGCTACCTACGAACGTACACAATCACTGCTGGAGgttatttttatatcaactaGCGGGTAATTATTTAGCGGCCGAGTGCGAGAGCAGCACTGATAATCAGAATCATTTAATTCACCATGTCCACTGCCGTGTATTgggaatttttcttggtgtttgatcacaacacaacaacaacaaccaccatcCTAATACAGCAATATTGCGCCTTAAGTGGAACTTCGTAGCCTCAGTGGAGGTGGATATAGAGGCTGGAGGTCGCGTGTTGCTCTTTTACTTGGACATTATTTGTTGTGGCTTAATCATGGATGCACCTTCAGTGTTCTTTTACCACAAGTCCTGTAGTCTGCGggtctgatttttttcttttaaaagtgaTTATTACTGACATGATGGTGAAAACACtcaacacactaaacacaacaCTCGCACTCGACACACTAAACACAACGCTCGCACTCGACACACTAAACACAACGCTCGCACTCGACACACTAAACTCATCACAACGCTCGCACTCGACACACTAAACACAACGCTCGCACTCGACACACTAAACACAACGCTCGCACTCGACACACTAAACACAACGCTCGCACTCGACACACTCATCACAACGCTCGCACTCGACACACTAAACACAACGCTCGCACTCGACACACTCATCACAACGCTCGCACTCGacacactcatcacaacaCTCGCACTCGACACACTAATCACAACACTCGCACTCGACACACTCATCACAACACTCGCACTCGACACACTCATCACAACACTCGCACTcgacacactaatcacactaaacactcgacacaacactcacactcgacacactaaacacaacactcacactagacacagtaaacacactaatcacactaaacactcgacacAACACTCACACTTGACACACTCAAGACTCAACACTAGACACTCAACCCTAAACACACTagacactaaacacactcagcaCAGAGTAGTGCTGCTTTAaggcttctctctctcagaccCAGAGCCATCACTTATTTGCAAATACTGTGTTACTTCAGCTCATCAAAGCCCAGGAGCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222731 lncRNA upstream 52139 26153529 ~ 26166792 (+) True G188179
TU222738 lncRNA upstream 54175 26161314 ~ 26164756 (+) True G188184
TU222739 lncRNA upstream 54175 26162308 ~ 26164756 (+) False G188184
TU222720 lncRNA upstream 109083 26109623 ~ 26109848 (+) True G188168
TU222672 lncRNA upstream 225528 25988798 ~ 25993403 (+) True G188127
XR_004579054.1 lncRNA downstream 196685 26419606 ~ 26420373 (+) True LOC117598393
XR_004579058.1 lncRNA downstream 197453 26420374 ~ 26421499 (+) True LOC117598395
TU223002 lncRNA downstream 204447 26427368 ~ 26575308 (+) False G188395
TU223004 lncRNA downstream 204447 26427368 ~ 26575866 (+) True G188395
XR_004579055.1 lncRNA downstream 206214 26429135 ~ 26436719 (+) True LOC117598394
XM_026910854.2 mRNA upstream 6816 26210548 ~ 26212115 (+) True polr2l
XM_034308615.1 mRNA upstream 80312 26099524 ~ 26138619 (+) False helz2a
XM_026910023.2 mRNA upstream 80312 26119408 ~ 26138619 (+) True helz2a
XM_034308692.1 mRNA upstream 123793 26083657 ~ 26095138 (+) True slc38a7
XM_034308780.1 mRNA upstream 156275 26039386 ~ 26062656 (+) True LOC113523928
XM_026910859.2 mRNA downstream 896 26223817 ~ 26227916 (+) True LOC113524556
XM_034308614.1 mRNA downstream 18151 26241072 ~ 26244720 (+) True LOC117598406
XM_026910874.2 mRNA downstream 37609 26260530 ~ 26352035 (+) True syt7b
XM_026910875.2 mRNA downstream 37610 26260531 ~ 26352035 (+) False syt7b
XM_026910876.2 mRNA downstream 37611 26260532 ~ 26352035 (+) False syt7b
TU222713 other upstream 6822 26185862 ~ 26212109 (+) False polr2l
TU222712 other upstream 6822 26210559 ~ 26212109 (+) False polr2l
TU222716 other upstream 8921 26206942 ~ 26210010 (+) True G188164
TU222375 other upstream 625428 25531745 ~ 25593503 (+) False LOC113523924
trnar-acg_9 other upstream 712436 25506423 ~ 25506495 (+) True trnar-acg_9
TU222884 other downstream 37756 26260677 ~ 26318575 (+) False syt7b

Expression Profile