RNA id: XM_026910875.2


Basic Information

Item Value
RNA id XM_026910875.2
length 6625
RNA type mRNA
GC content 0.45
exon number 13
gene id syt7b
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26260530 ~ 26352035 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGCCCTCCAACCTGCCTCCCGCGGCCATCCGGTCTCCTGCAAACAAACCGAGTGGAATGGATTGAGAGAGGAGCGAGGGAGGgactatgagagagagagagagagagagagagagagagaggactaaCCTGCTGGAGTGTAGCGGCTAGGAGACGCGCGCGGGCTGACTGCTAGGCACGCGCGGGCTCTTCCACGCTCGCGACGGAAACTCAGTCAATCTGTATTCctaatttgagttttttttcccttcttcctcacagtgaaaaaagaaagagaagaatagAGGAAAGGCAGCCATGCGCCTGAACCGAGACGCCGAGGACGGCAAAGgttcCCTGTCGCTGGGCGTGTTCCTCGTGTCAGTCGGtctaactgtgtgtgttgtgtggctCGTGGCACTCTGCGGCGTCTGTGGATGGTGCCAACGCAGACTGGGGAAGAGGAATAAGCCAGGTTTGGACACAGCAAGTTCTCCGGACTCAGTGTCCGTACGAGGCCGGGGTGAAAATAAAGCCATCAATGATCTAGACAGGGACTTTTGGAATAATAATGACAGCAGCAATGTTCAGCAGCGGTGGAGCTCCTACCCTCCTAAGGAGTTTCTCTTGAACATGTCTCCTTATGCTCCGTACGGAGACCCACGTCTAACGCCCAATGGCTCGTTGGAGAAGTGCGAGGCGGGTGGGGGGACAGGGGCCGGGCCCAGTCGCAGTGACAGCTCCAGGAGTGTAGAGGCAGGAAGCAGCAAGGCCGGGAAGTGGCAAACCGTCAAGAGCCACATGCACTCCGGCATCTTGAGGCCAAGCAATTTTGGGGATGCGTCCCCGCTGTCCACAGCGTCCACTCTGGAGCACATCGCACCCTCGGCGTGTCGTCCTCGGCCCCTCGTCAGACAGCAGAGCCTCCAGCAGCCCCTGACCCCCCGGCCCCCTCCGCCGCCCAACGACCCCCCTGCCACTTCACAGAGCCTGGGGCAGTTACACAGCAGCTCCGGGGGCGGCGGGGGGCAGCGGGGGGGTGCAAGGCCGGGGGCAAGGGGCAGCCCAGCCGCACCCGGGGCATCTCGCTACAGAGCGGGCGCAGGGGCACGGTCCCGCTCCAACCCGGGCAGCTGGGATCACATGATGGGGCAAATACGCACCAGGGGCATGGACGTCAAATCCTTCCTGGAAGGCAAGATGGTGGTGCTGTCTCTCGCGATTGGCCTGGCAGAACAGGACGACTTCGCCAACCTGCCAGACCTGCAGGAGAAGCCAGCGAGCCAAGAAACTCCTCCTGGCGACAAGAGAGCCATTGGTAACAAAGCCAACAGCAGTCCTAAAGGCCAGACCCCAGACGAGAGCAACCGCCGCACGGACGCCAACTCCTCCGTCTCAGACCTCGCCAACTCCGTCACCAGTGACATGCTCATGTTGTCTCCAGGCTCTGAAGAGGAAGAACATGAGGGTCCGGTGTGTGAGAAGCTTGGACGAATACAGTTCAGCGTGGGCTACAGCTTTCAGGACTCCACACTTACTGTGAAGATCCTTAAAGGCCAGGATCTACCGGCAAAAGATTTCTCCGGAACCTCAGACCCATTTGTTAAAATCTATCTGCTGCCAGACAAGAAGCACAAACTGGAGACCAAGGTGAAGAGAAAGAACCTGAACCCTCACTGGAACGAAACTTTCCTGTTTGAAGGTTTCCCGTATGAGAAGGTGGTCCAGCGCACTCTGTACCTGCAGGTGCTGGATTATGACCGATTCAGCAGGAATGACCCCATAGGCGAGGTGTCCATTCCTCTCAACAAGATCAATCTCGCTCACACGGAGCCATTCTGGAAAGAGCTGAAACCGTGCAGCGATGGCAGTgggagtCGAGGTGACCTGTTGGTGTCGTTGTGTTACAATCCCACGGCTAACACCATCACTGTGAACATCATAAAGGCACGCAATCTAAAAGCCATGGACATCGGCGGCACCTCAGACCCCTATGTGAAAGTGTGGCTGATGCACAAAGACAAACGGGTGGAAAAGAAGAAGACAGTGGTAATGAAGAGGTGTCTGAACCCTGTTTTTAACGAGTCCTTTCCTTTCGATGTTCCTGCTCATGTGCTGAGAGAGACCACCATCGTCATCACAGTCATGGATAAGGACAGACTCAGTCGAAATGATGTCATAGGCAAGATCTATCTCTCATGGAAGAGCGGCCCCGCAGAGGTGAAACATTGGAAGGATATGATGGGCCATCCTCGCACTGCCGTTGCCCAGTGGCATGCCCTCAAGGCTTAATGGACCCACCCACTAGCCCCGCCCCCAGATTAACCCCACACCCACAAGCCCCTGTTAATATGCACAAGCTTGAACACGGGTACCAAAAGCCATCCAACATTTGCTCCTTTTCTGTCCTTCTTCTATGTGTGTCCACAGATGGACTCATTCTTTCACTCTTCTTTATCTAGTTCTTACCTGTTTTTCCTGATTTGCACCTGCTGAGATCCCTTCTTTCcctttttgccaaaaaaagagGCTAAGCACTGCCAAGAAGATTGTAAAAGTCCTGTGTTATGTAATGGAAAGCAGGCTTGTCTTCCTtgagattatttattttgactGTTCAGTTGTCCGGGGAACAACCCAACATCCGACCAGGATGATGGGACTTCCAACCAGCCGAAAAAGATAAAAATCCTTCCCttctactgccatgtttttgtagTCCTTCCTCCAGTTATCATTCCCCCCCATAAAGATCCGCAAGGATCGCATCGCAGTGCAATAcctgatggatggagagatgaactCTTTACTTGAAACTCTTCGCCATCTCTTGCCAGTTTTCCTGGCATCAAGTGTAGAAACCCATTTTTGCTGGAATTCCTTGTCATCTGTTTGTTACTGTGGGTGCCGTGATGTGACAAAAaagttgttgttaaaaaaaaaaaagactcacctttttttttttttttggctggatCAAAGGCTTAGGGCGTTTGCAGACCTAATTCATTTGAGTTTTGGTTTGAATCAAAACGGTTTTTGTCAACATCCAGATGAAGTTTATTCACTACAATAGTCCTGAAATTTCTGTGTCAGAGCTTTCTTTAGGTAGCCAAAATGAATTGCCAGTTGCACCCCGGGTTTTCATGTCGTACACATGTATCGTGTATGATGCATTACACTATTCCGAAATTCTTTTTCCGGAGCACTGAAAGAAAGCTTTCACTCTGAGCACCTTTAAAAGCTGGCTTTTCCCAAGTCAAAAGGTGAGTAAGACGTGTTCCTTTGTTGTTCCTGGATCAACACTGTGTGCTCCCTCCAGCACCTCCGACTCCTGAGCCGGTAAAAACTTCCTCCAGAACACGCGAGTTATTGCGTAGCTGTACATATACCAAAATCTGAAATTCTTGACAATCTTCATCATGCACCtctttcattattcatttaattgaGGACTGTTAGGGTTTGTAATTAGAAGCTATGTAGCTTGCTGAGCTGAGTGGTGCGTTTCTATGCTACACATACAAACGTAATATTGTCAACAAATGAACAGTATTGCTCAACATGCAGAGCTGTACAATGGTTTTCCTCTCTGGAAGCCAATTGGTGCATGTGGAGGAAATCTTCAGGTGGCTCAGGAATGGGAGGAATGACATCGGATGGTTCACTGGTGAAAAGGGCTGTTGACCATGGAACAACGAAAAGTTCATCCAGGAACATCTCTTACATAAAGAAACATTCAGCTCTTAGCCTAGCTAACACAACTGGAACAGACAGTACCATAACTTTATGTGTATCAGATAGCTTTCATGCTTAAATCAGACTGTACCTGAACTATAGCCAGTGCTATGTCATGATTTAAACTTCTACTGATGTGCATGCACCCATCCAAACCAACAGACCTGAGGAAACATCTGTGTCTGAAATGACCAAAAGAACCAAATGATGAAGGTGTGAAAGCGTCCTTGGTGCGAATACAGTCGAAAAGATGCTAAACATTCCAATCATGTATAAAACAGGGCAGGCGGGAGGAAATGAGAACTGCTCATTGTTGTTTTGAAGTCAGTTCAAATGCTTCCATGACAGAGAGGTTATATGGTTGGTGGCagcagatgtgtgtttgtgtgtgtgtgtttgtgtgtgtgtgagtgtgtgtgtgagacattagaCCAGTAGAAATGCACTATTATTAGAAGCTGCAAacctgatgcagtgtgtgtgctgcatcaCCCGCATTATTTTCTTAACCAGATCACTGCCAGTGTTAAACAAACTTCTTAGTagagtttattttttaagagcCAAAGTAGtagtttcaaaaaaaaaaatcacacctgcTGAGCAAAGAATGAGTTTGAAGGGAAGTAGCAGTTGAAAATATCATGTATCTTGTGTGTGAAAGTTGTAATTTATCCAGTCTTATTGTCCTAATGTCTGACTAGTGTATGTAAGAGTGTTAGATATGTGAGTGTTTGTAACAGGGACAAAGCGATTCAGGTGGAACTCAGCTCAATATtgcaatttaaatgaaattaagcCTTTATTAGCACTCTTACAGAAACCTTATTTTACACTCCTGTAGTTTACTGTATTTTCTGGATTGTAACACTATGATTTTGAGATTGAAATCATGGCATTCCTTCATTCTGAGCAATGCTAAATTTGCTAGCACTGGGTTGGGCTAACAATGCTAACTGAATTACCTGAGCACTTTACcgaaaaataaaatgcactgtaacatgtaataaaataagGATAGTGCCATATACATgacataaacatttttctgttcctGGTCTCATGTGTCTGTATCTTCTAACCGAAGGTACATTACATATGAAACCAGGCACTATCGTTAAGTTGGTGCTAAAACAGCATCAAAAATCTCACAGGAGTGCTAGCGGAATTTAGCATTACAATGTGATTGGACACGCAAATGCTATTTACGAAGGGATTTACGCTCTGGGATGTGTGCGACACTCGAGAGATTTATTGTCCAGAAAGTACAGTATCTATTGTTGCTTTTTAAATAGACATATATAAGCTTagtggaaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggcttgAGGGACTCTCATGTGTGCTACGAGTTTTGGGTTCTTTATTTCTGCTCACCTCTGAGTAGTGTTACAGTCTCTACAGTAGGCATGTgccaatattacattttttgatCTTTCACActttatattctattttatttttataaaataataatcactagGCTAATAAAGTTGTAGATTCTGCCCCCATGTTTATCTCACATGCATGGAACGTTTGTGCAGTCCTCGTCCTGAGTGGGACAGACTTCATCGTGGAAGCACTATCTAGGCAGCCTAGCTCCTCCTAAATTAAATGCTGATGTATTTGGTGATTTAAAGTGCCTATGATAACAACATATGCtgaattttgtgatttttggttATTGGCACAAGCCTACTGTAAAGGTTCCAGATATGGGAACCTGAGGAGAAGTGTTTGAGAAACAAGCTACCGGTGTAATTTTCTTAAACGTAAAGTAAACCTGATTAACATGTAGGTAGCGGAACATcggtattaaaggaatagttgagttaaaaattaaatgtatacaGTTTTTCTTCTTACCCCAAGTACAGTCCAGCAGCCAAGACATCTCTGGCGTTcagtattttcttcttaattttACGCTGAAGGTGctaaaatcttttccatatATACACATCTTCATCTACTTGCTTCCGATTACTTTAAGCTGTGtaatatatttgaattaaatcaaattgtTAAATATATCACATTATCAAAAAATTGAAGTTAATTGTCTTGTTATATCCAACTTTCTGGTAAAATTTCACCTTCAAATTTTAGTGCAATTtgggaaaaaagtgattttgGTTTCCTTTGTGATTTATAGCATTCAGCTACATTGTGAAGTTTAGGTTATTTTTATAGATAGCAGTTATACCACCCTGAAGATCTGGTTGAGCTATATGCAGTATCTACCTTGACGATTATTAGTtgcattagcctcatagctcacCCTTGTCTTGGCTGTTCGACTACATCTGGTGTTGGtggaaaatgttcatttttctgtCACTTTGAGGAGAATGAATTTTTGACTGTACTTGTGACAGTGAACCATTTCATATAAGCAATATTAACACAGAGAGATTGTGAATCCTGTAAAGTAAATAAGAAAGAACGAGGTAACCCATTCCCACCAatgctataatcacacactcagtgtgtCTGGAGTATCTGTAACATTGCACTGACATTTTGTCCTCCAAATTCTGACTGGAAGTGTCAGGCAGGAAGGGTGAGAGACATCAGGCGTGAGAATCTCTGGCAGAAATTCTCTTGCTTTTTATCCTTCTTGTGCATAACCAGCTGTGACAAGCACGACCTTCGCCGTACATGGAGGGAGAGCTGAGCGTGTTAAGGACAAATCCAGACTGAAGTAAAAGTAATGGCATGGTAGGGAGGAGCTGTCACTGGGaatttggattttaaaaaaatgtgtaaaagaaaattgacaaacagttgaggccaaaagtttacatgcacataggctcaatttttcaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222764 lncRNA upstream 37610 26218931 ~ 26222921 (+) True G188202
TU222766 lncRNA upstream 37610 26220435 ~ 26222921 (+) False G188202
TU222731 lncRNA upstream 93739 26153529 ~ 26166792 (+) True G188179
XR_004579054.1 lncRNA downstream 67571 26419606 ~ 26420373 (+) True LOC117598393
XR_004579058.1 lncRNA downstream 68339 26420374 ~ 26421499 (+) True LOC117598395
TU223002 lncRNA downstream 75333 26427368 ~ 26575308 (+) False G188395
TU223004 lncRNA downstream 75333 26427368 ~ 26575866 (+) True G188395
XR_004579055.1 lncRNA downstream 77100 26429135 ~ 26436719 (+) True LOC117598394
XM_034308614.1 mRNA upstream 15811 26241072 ~ 26244720 (+) True LOC117598406
XM_026910859.2 mRNA upstream 32615 26223817 ~ 26227916 (+) True LOC113524556
XM_026910854.2 mRNA upstream 48416 26210548 ~ 26212115 (+) True polr2l
XM_034308615.1 mRNA upstream 121912 26099524 ~ 26138619 (+) False helz2a
XM_034308579.1 mRNA downstream 69878 26421913 ~ 26429101 (+) True LOC113524564
XM_034308580.1 mRNA downstream 139082 26491117 ~ 26491773 (+) True LOC117598404
XM_026910145.2 mRNA downstream 162515 26514550 ~ 26517299 (+) True rplp2l
XM_034308820.1 mRNA downstream 212266 26564301 ~ 26566306 (+) True LOC117598415
TU222713 other upstream 48422 26185862 ~ 26212109 (+) False polr2l
TU222712 other upstream 48422 26210559 ~ 26212109 (+) False polr2l
TU222716 other upstream 50521 26206942 ~ 26210010 (+) True G188164
TU222375 other upstream 667028 25531745 ~ 25593503 (+) False LOC113523924
trnar-acg_9 other upstream 754036 25506423 ~ 25506495 (+) True trnar-acg_9

Expression Profile