RNA id: XR_004579053.1


Basic Information

Item Value
RNA id XR_004579053.1
length 639
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id LOC117598392
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26445979 ~ 26511407 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaagctgctctctgctggactggagaatccacactgtacactggagatactgagatttaaacaggaagtgggtgtggtctgtaCAAGAGGGAATTTCATGTGAACCCTATCACTATGccctgaaaaacagtgaaaacatcaGGCTGctgcaaaagaaaacattttttcattcacaatttataacacatttaaatatttatttatttgtttgtttgtttattaggtttttcaaattatataattttattcaactcctgaaccagacATCCTGTGGAACTTTATGGAATGTttttctatcttctatctaatgtgactgagtaaaaaagctaactatgtttcaaaacaacaatctctttcccaaatcaagaaactgttatttactgttgacaaccatataattttatttgatcagatttactttagcttttgtgtttgttacattccagaaagatcagaaaagttcactggacatGCTATCAGAATCTGTTATAAAGATGGACATGGTACCGGCTCCatgaggacagataacatcagagaaattgcCTTATTGACCTCACCGTAAAGTACGActagtactggcatgttattaactggctgcgtttgtgtaatctgacagaggaaagctgtagagttctgtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579055.1 lncRNA upstream 9375 26429135 ~ 26436719 (+) True LOC117598394
XR_004579056.1 lncRNA upstream 9375 26429135 ~ 26436719 (+) False LOC117598394
XR_004579057.1 lncRNA upstream 9375 26429135 ~ 26436719 (+) False LOC117598394
XR_004579058.1 lncRNA upstream 24595 26420374 ~ 26421499 (+) True LOC117598395
XR_004579054.1 lncRNA upstream 25721 26419606 ~ 26420373 (+) True LOC117598393
TU222987 lncRNA downstream 60617 26508039 ~ 26511407 (+) False LOC117598392
TU223005 lncRNA downstream 73991 26521413 ~ 26571083 (+) False G188396
TU223006 lncRNA downstream 73991 26521413 ~ 26574817 (+) True G188396
TU223007 lncRNA downstream 73991 26521413 ~ 26571834 (+) False G188396
TU223013 lncRNA downstream 73991 26521413 ~ 26571083 (+) False G188396
XM_034308579.1 mRNA upstream 16993 26421913 ~ 26429101 (+) True LOC113524564
XM_026910874.2 mRNA upstream 94059 26260530 ~ 26352035 (+) True syt7b
XM_034308580.1 mRNA downstream 43695 26491117 ~ 26491773 (+) True LOC117598404
XM_026910145.2 mRNA downstream 67128 26514550 ~ 26517299 (+) True rplp2l
XM_034308820.1 mRNA downstream 116879 26564301 ~ 26566306 (+) True LOC117598415
TU222884 other upstream 127519 26260677 ~ 26318575 (+) False syt7b
TU222713 other upstream 233985 26185862 ~ 26212109 (+) False polr2l
TU222712 other upstream 233985 26210559 ~ 26212109 (+) False polr2l
TU222716 other upstream 236084 26206942 ~ 26210010 (+) True G188164
TU222375 other upstream 852591 25531745 ~ 25593503 (+) False LOC113523924

Expression Profile