RNA id: TU223005


Basic Information

Item Value
RNA id TU223005
length 859
lncRNA type sense_over
GC content 0.46
exon number 2
gene id G188396
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26521413 ~ 26574817 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tacagGATCCAGcaacttttttatttgattgGAATACAACTTCAGCAATAAAACAGCACATTCAGGTAAATGACAAATCACGAGCAACAGGAAGCAAGCTGGAGCTGAAAACTGAGAGCGTCTAACTGGACCACCGTGTGGTAGAAGAATGGAAAAAGGAAGATGGCAGGATGGTGTAAGTGAAGGTGGCGTGGAGGCGATTTAGCTGCTCTCGCTGCCCAGCGTGTGTTTATCAAACAGATATTCAGGTAAATGACAAATCACGAGCAACAGGAAGCAAGCTGGAGCTGAAAACTGAGAGCGTCTAACTGGACCACCGTGTGGTAGAAGAATGGAAAAAGGAAGATGGCAGGATGGTGTAAGTGAAGGTGGCGTGGAGGCGATTTAGCTGCTCTCGCTGCCCAGCGTGTGTTTATCAAACAGATATTCAGCCATGCCGTTCTGAGGCGCTCCCATACGGCGCAGGTTAGCCACCCAATCAGCAAGCTCCTTAATGGACTTCACCTGTTCGTCCAGGTAGTGCGTCTCAATGAAGTCACACATCTGAAGAGACACAGTAAGAATAATGCATGTTTAACCATGACTCAAATAATAAGTCATGTGACTAACGGGATGTCCAAAGTCCAGTTCTTTCTACCCCAACTGACTCAGCTCTGATTACACTGGAAGTTTACAGTGGTGGTTTCTGCCCTTTGTTCAGAGCAGATAAAACCCTGCAGAACAAGTCTAGCCAGCTGAAGAAGTTCGTCTATTCCTGCTTTGTGAAGGACGTTGGCAAGCTCGGCCAAACCAGACCCTGGGATTTCCTCTTTTCATAATTCTTTTCGAttgtgtgtgctaatattttgaaacagTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222987 lncRNA upstream 10006 26508039 ~ 26511407 (+) False LOC117598392
TU222980 lncRNA upstream 70994 26445979 ~ 26450419 (+) True LOC117598392
XR_004579053.1 lncRNA upstream 73991 26446094 ~ 26447422 (+) False LOC117598392
XR_004579055.1 lncRNA upstream 84694 26429135 ~ 26436719 (+) True LOC117598394
XR_004579056.1 lncRNA upstream 84694 26429135 ~ 26436719 (+) False LOC117598394
XM_026910145.2 mRNA upstream 4114 26514550 ~ 26517299 (+) True rplp2l
XM_034308580.1 mRNA upstream 29640 26491117 ~ 26491773 (+) True LOC117598404
XM_034308579.1 mRNA upstream 92312 26421913 ~ 26429101 (+) True LOC113524564
XM_026910875.2 mRNA upstream 169378 26260531 ~ 26352035 (+) False syt7b
TU222884 other upstream 202838 26260677 ~ 26318575 (+) False syt7b
TU222713 other upstream 309304 26185862 ~ 26212109 (+) False polr2l
TU222712 other upstream 309304 26210559 ~ 26212109 (+) False polr2l
TU222716 other upstream 311403 26206942 ~ 26210010 (+) True G188164
TU222375 other upstream 927910 25531745 ~ 25593503 (+) False LOC113523924

Expression Profile