RNA id: XM_026909971.2


Basic Information

Item Value
RNA id XM_026909971.2
length 3106
RNA type mRNA
GC content 0.50
exon number 14
gene id e2f8
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 25188293 ~ 25199986 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGCCAAGCGTCCTGGTTACCGGGCCGCGGCGATTTGAAATCAAAATAACTCCGATTTGCGCAACAATTCGTGCCTCAGCGCGTCATTACTCAGAGCAGTGTGTGCCAGCTCATTAACCCTGTGTCATTACACCCTGATCAGGGCTCTGCGATGCTTTCTCCCAGACTGTacaatgctgtaaagaaaagGTGGAAGATGAGCAGCACTTTACTGGATGGTCAGCAGTTGAAGCAGAAGCTTGAGATTAACCCAAACCCAAGCAGCTCAGGTGCAGCGCGTGAGAAGAAAAAAGTTGTGTTTGTGGAGCCACAAACACAGTTAACAACTTTAGGAAAACTTCAGGAAGCTCAGAAGGCCATGGGACCTTTATCCACACCTACGAAGGGCTCGGAGGCCCCGGGAGGGGAACCGTGGACACCGACGTCCAACCTGAAAATGTTGATCAGCGCTGCGAGTCCAGAAATACGCAaccgagagaaagagaagaacagCACTGAGGAACATGAGAACTCCTCTCAGGATACTGAACAAGGAGAAGAGTCAGAGAGGCTGCAGCTCAGCCGAAAAGAGAAAAGCCTCGGGTTGCTGTGTCACAAATTTTTGGCTCGATATCCAGATTATCCGAATCCAGCTCTAAACAATGACATTTGCCTTGATGATGTTGCTGTTGAACTGAATGTGGAACGGCGACGTATATATGACATCATGAACGTTCTGGAGAGCCTGAACATGGTCAGCCGTTTGGCTAAAAACCGCTACACATGGCATGGTCGTGCTCAGCTAGCACACACACTAGCACTGCTccaaagagagggagagaaacaccACTATAGCCAGCAGATCCAGCAGATACGGCAGAGACATGCAGAGGACATGctggagatggagggagaggagaaagagaacgAGGACGTCGATGGAGAAATCACACAGAAGGAGCCAGGATTTAGTGAAGCCACTGTCGATGCTAAAGGGGCTAGCCGTAAGGATAAGTCCCTGCGTGTGATGAGTCAGAAGTTCGTTATGCTGTTCCTGGTGTCGAGTCCACGTGTGGTGAGCCTGGAAATCGCAGCCAAGATCCTGATCGGAGAAGACCAGGTGGTGGACCAGGACAAGAGCAAGTTCAAGAcaAAGATTCGTCGTCTATATGACATCTCTAACGTCCTCAGTAGTCTTAAGCTTATTAAGAAAGTGCATGTGACGGAAGAACGAGGAAGAAAACCCGCATTTAAATGGACTGGACCAGAGAATCTGTCCTTACAAGGTTTGCAGGTTGAGGCTTCTTCTTGCCCTCGGCCCCTCGAGTCCCGCTCGTCTGTAGACAACTGCACCAAAAACCTTTTCTGCTCTCCCAGCACTAAACGAGGCTTCACACGACATCATTCACTCGTCAAATTGGCCAAAAGCATCCAGGATGATCGCAGGAAGATCAACTCTGCTCCATCAAGCCCCATTAAAATCACAAGTGATGCGGTTAATGGAAGTTTCTATTCAAGTAAAATGGATCACCTCGCTGAGATTTGTAAAATGCAGCTGGACCAGCAAGCTATGAATGCCCAGAAGCAGAGCGATCTGAAAGAGGCTGCTCACTTGCAGCAGAAAAACTCAATGTTGTCACCCATTCCCCCCGTGATGACATCAGGGGCAGAGGCTTGTCCTCGGACGGTGCAGTTATCGCTTGCGCCTCCTCCCTGCTGCTCCCTCGTTCCTGTGCTGCTTCCCCATGCTGTGTACGTCAGCCACACCCCTGTCCGTCCTCGCCATGTTGCCAGGCCTCTGCCCTCTAGCACTGCTGTGCGCTCCATGACCTTTGAAAGCCCCAGAGGAGCAAACACGAAGGCGTCACCAGCGTCTGTAACAGTGACAGGCCAGAGGGTGCACGGTTTCGAGCCGGCAAGTCCTGCTCTGAAACGGACGTGCTTAGAAAGTTTAGAAAGAAGTCCAGCTAAGATTAAACGGCCTGAGATGAACTCAAAGAGCTTGTCCCCTAAGCTGTGTGAGATCCTGCAGGCTCGTCTGAAAGATCGTAGAGGAGCCCTGAGTTCCAGCCGTGCCTCAGCGAGAGCTCTGCACCTCGAGCCTGAATTTAACAAAACACCCCATAATAATCCTGATACTGTGGAGCACAACATGGAGCTGCAGCACTTCCTGGAGACAGAGGAGAGGGAAGAGAAAATACAGAGCCAGGTTACACCCACTCTGCAGGATTCGGctggacacacaaacacagagactcTGATCCCCACAGGTTATTTGATTCCAATTTCCCAACAGCCTCTGCTTAGCTTTAAAGAGACTTCGACCTCCAGTGGAGAGACAAATAAAACGCCAACATACATCTATCGCACACCAACTGCagGTTCGATAGCCCCTTCACCTCAGGAGTTCACCCCATCCCCTCTACCTGTCCATCGCCCCACCCACCGGGTCAGCCCCAACCCTTCCATCCTCAACTTCACCCTGCAGAACCTTGCTCTGATCCACAACACACCCAacaccacacatacagtacCAGCACCGGAGCAGCCGAGCCCCATACCCTGCACACACGCGCATGCTCACACACCGCTCCAAACACACGGCATGATCTTCATCAAGCCCGTCTCACCTCTCACACTCATCAGCCTGCAGCAGCCGGCCCTGACCACGCCCAAAAGTGGCTCCGCCCCCCAGCAGTGCTTTTTCCACACACCAGTCTCCACCGTGGTCACGCCCACTGCCAGTAAGAGCCTGTACATCCCTCAGAGGAAGCTGGACGTGAGCTCAGAGGAACACTGAGATCATCCACTAATGACCACTAACAACTTGTGAACTGTGTACATGACTGTTTAATTATCTGAATGTTTTGTAGCTTTGGCTTTACCTTTATGACTTACTGGTCCTGATTTTTCACTTGAACAGTCTTGGAAAAACAGAgccatgtgtgtgcatgtgtgtgtgtgcatgtgcgtccaaataaactgataaacttGACCTTAACATTGAGGTGCTAGCATTCTCTGGTTAGCTTTGTAAAAATACATAGTGCTGTATCTGAAATGTATAAAGAATAATTGTGAGTTtgatttaacaaataaatgtgAGCCTTCTGAGCCATATGGGAAA

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0048523 negative regulation of cellular process biological_process
GO:0001890 placenta development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0010564 regulation of cell cycle process biological_process
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222076 lncRNA upstream 13388 25175808 ~ 25176089 (+) True G187612
TU222026 lncRNA upstream 67362 25121247 ~ 25122115 (+) True G187563
TU221986 lncRNA upstream 201384 24987879 ~ 24988093 (+) True G187527
TU221763 lncRNA upstream 257431 24931645 ~ 24932046 (+) True G187340
TU221673 lncRNA upstream 382912 24803771 ~ 24806565 (+) True G187276
TU222133 lncRNA downstream 72290 25272276 ~ 25272599 (+) True G187668
TU222140 lncRNA downstream 90527 25290513 ~ 25290974 (+) True G187675
TU222258 lncRNA downstream 145305 25345291 ~ 25345491 (+) True G187782
TU222386 lncRNA downstream 547124 25747110 ~ 25750632 (+) True G187895
TU222471 lncRNA downstream 718565 25918551 ~ 25919605 (+) True G187961
XM_026910019.2 mRNA upstream 18665 25158405 ~ 25170812 (+) True immp1l
XM_026910017.2 mRNA upstream 18665 25158861 ~ 25170812 (+) False immp1l
XM_026910020.2 mRNA upstream 18665 25158886 ~ 25170812 (+) False immp1l
XM_034308686.1 mRNA upstream 21295 25158783 ~ 25168182 (+) False immp1l
XM_026947229.2 mRNA upstream 205272 24950414 ~ 24984205 (+) True zdhhc13
XM_026909983.2 mRNA downstream 4133 25204119 ~ 25326654 (+) False nav2a
XM_026909982.2 mRNA downstream 4138 25204124 ~ 25326654 (+) True nav2a
XM_026909988.2 mRNA downstream 4168 25204154 ~ 25326654 (+) False nav2a
XM_026909984.2 mRNA downstream 4270 25204256 ~ 25326654 (+) False nav2a
XM_026909985.2 mRNA downstream 4372 25204358 ~ 25326654 (+) False nav2a
TU221326 other upstream 978752 24207893 ~ 24210725 (+) True glrx2
TU221328 other upstream 978752 24207893 ~ 24210725 (+) False glrx2
trnaq-uug_6 other upstream 1242414 23946992 ~ 23947063 (+) True trnaq-uug_6
trnaq-uug_5 other upstream 1250589 23938817 ~ 23938888 (+) True trnaq-uug_5
trnaq-cug_12 other upstream 1251097 23938309 ~ 23938380 (+) True trnaq-cug_12
trnar-acg_9 other downstream 306437 25506423 ~ 25506495 (+) True trnar-acg_9
TU222375 other downstream 331759 25531745 ~ 25593503 (+) False LOC113523924
TU222713 other downstream 985876 26185862 ~ 26212109 (+) False polr2l
TU222716 other downstream 1006956 26206942 ~ 26210010 (+) True G188164
TU222712 other downstream 1010573 26210559 ~ 26212109 (+) False polr2l

Expression Profile