RNA id: XM_034308569.1


Basic Information

Item Value
RNA id XM_034308569.1
length 9447
RNA type mRNA
GC content 0.47
exon number 40
gene id nav2a
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 25204119 ~ 25326654 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTCAGCTCGCTCTGGTTCCCGTCTTTAAaTCTACACGGACTGGGCGAATCACTATTTGGCAAAATCAGGACACAAGCAGCTGATTAAAGATCTGCAGCAGGATGTTTCTGATGGAGTGCTTTTGGCTGAAATCATCCAAGTCGTAGCCAATGAAAAGATCGAGGACATTAACGGCTGCCCAAAGAGCCACTCGcagatgATTGAAAATATTGATACATGTCTGGCTTTTCTGGCAGCAAAAGGTGTGAACATACAGGGACTCTCAGCTGAAGAGATCAGAAATGGGAATCTGAAGGCAATACTGGGACTGTTTTTTAGTTTATCACGAtacaaacagcagcagcagcagcagcagcagagcacttcacagacacacttcacacacactcacacacatactgcaccTACACCCACGGCCTCCTCGCATGGGACACACGCCTCAGCAGCACAGATCCATCGAGCACAGGCGGAGATGCAGTCCAGGACTTCCTCTGAGAGCAAACTTCTCAAGTTTTCCATTGGTCAGAAAAAGACATCTAGACTTCCTGGCCCTACATCGAGagtttctgctgtgtgtgtcgaGTCGTCACCGCGCGGTTCAGTCAGCTCAGCAGGAAACAGACGCAGTCAGACGTTCAGTGAGAAAAtcaaacctgcagccacacagACCAGAGAATCATTAGACGGCATTACTTCCCAACCTCCAAGCATGACTGAGCATGTGCCATCATCATGTGCAACCACCTCCACCATCACCAGCACTGTGCCgtcttcctcttcatcctctgcCACTTCCTGCTCAGCCATCCCTCAGCCCAACTCAAGCAGCAAACCCTGGAGGAGCAAATCTCTGAGCGCCAAAAACACGTCTACCTCCACTGTTTCCCCAGTTAAAGGGGAAGTCCCTTCCAAACAGCCCCCTCCCACTGACCCACCTCCCAAATCCCTGTCACAGAAGTCCATGTTGGAAAAACTCAAACTGTTCAACAGTAAAAGTGGCTCTAAATCCTccacaccaccagagggcactgTGCAAATGTCGCCCATGTTGGAGAAAGTAGAAGCTACTGAGCCTCTGGAGGAAGCTAATGGTCATGCATTGACAAGCAGCAGCCCAAAGATGGCACTGAAGGGCATTGCACAGCGCACCTTTAGCCGAGCGCTAACGGCTAAAAAGGGCTCAATGAAAGGTGTTGAAAAAGACAAGGACaatgacaaagagaaagagcgggctaaggagaaagagaaggacaaagagaaaggaaaggagaCTTCTAAACGAATGTTCACTTTTGAAAAGACAGTCAATAGAGAAGCAGTATCCACAGAGGAAGTGACTACCAGAAGTGAGGTAAGCATAGCAGCTGCAGAGCCTAAACGAACATCTAAAATTGCTAGCCTCATTCCCAAAGGAGGCAAAACCAGCACCAAAAAAGATAGCTCTGTCTCCATGCATAGCGGAATCCCCAAACCAGGAAGTAAAAGCACAGCTAAAAGCTCAGGAGTGCCCCTCTGTGGCAAAGACAATGAAAGGCCACGTAGCATGAGGCTAAGCAGTGGAATCGGTTTCCATGGAGACAGTCGCcactcttcttcctcttccagTCTCGCATCTACAGAGGGCAAAGGTCACCAGAATCACAGTGTAACCTCAATGGGTAATGGAGGAACTACCCAATCCACAGCTAGCAACACAGTTAGTGTACAGCTTCCTCAGCCTCAGCAGCAGTACAGCCACCCAAACACAGCCACTGTAGCACCATTCATGTACAGgTCCCAGACAGATGGGGAGGGCACCGTAGAAACAGGCTCCACAGGACACACTGGAGAGTCAGGTAGCTTCAGCAAAACTAACCAGACATCCACTGAAGATTTATCAGGTGAAGATCCTGAGACTAGGAGACTGAGAACAGTCAAAAACATTGCAGACCTTCGacagaacctggaagaaaccatGTCCAGCTTACGGGGGACACAGATCACACACAGTGCTCTGGAAACGTTTGATAGTGGCGTCACCACGGAAATGAACACTCGTGGTTTTCGGTCATCTCGTGCTGCGCCACTCTCGTGGACCAATCGGATCGGCCCGTCCAGCCCACGGCTGCAGGCAGGCGATGCCCCCTCCCCGGGGAATGGATATCCGGCACATGGAGGCATAGGTGGGGCTGCCCTGGGTCACACCCGCTACCTTTACTCTGCCCCTCTGCGCAGGCAGCTAGCAGCACGCAGCAGCGCCATCTGTGGGCTTGAGCTGGGAGAGCGGGGTGGAGAGGAGCTCGAGCTTGACGTCAGTGGCTATGTGAGCGACGGAGACGTGCTGGCCAAGAACGCACATGCTGATGAGCTCAGCAGCGGctACCTGACTGATGGTGGTTTGAGTTTATACACTCGTCGTATGAACCGTTTCCCAGATGGACTGGCGATGATGCGAGAAACTTTGCAGAAACATGTATCGACAGGTCAAGGAGACGCAGACAGTTGGGATGACAGCAGTTCCGTCAGCAGTGGAGTTAGTGATACGATCGACACTGATGACATCAACACTAGTTCCTCCAtcagctcatacacacacacatctgctgcATGCAGAGCCCTGAACAcccagCCACAGACTGATGCTGAGAAACATTCAGCCACTGAGCGAAACTCAAGCTGGTCTTGTGATGAAGTCAAGAAATCAGACGGAGGTTCGGACAGCAGCGTGAAAATGGAGTCTGGCTCAAAATGGCGACAAAACCCTTCTGATGTATCAGATGAGTCGGATAAGGGAGGATCTGGGAAAAGGGGTGGTGCCATCTCTCAGACTGGTTCATGGAGGCGGGGCATGAGTGCCCAGGTTGGCGTGACTGCGCCACGCACGAAAAACACAACAGTTACCTCAGGACCAGGCATGATGAAAACACATGGGACTGCTAAAACGGATGATGCTAAAGTGTCAGAGAAAGGCCGCATTTCTCCCCACACTAACAACATTCAGAGCTGTGACCCTGTCCTCTCCCGTGTTTCCTTCGGCTTTAAGAAACCCACCTCCGGGTCCATATCTGGTCCCACTGCCACAGCAACGACCTCCAGCACAGCCATGGTGTCAGCTAGCAGAGTCACGGTCATCAGTGGCTCAGCCACACTGGGGAAAATCCCCAAATCCACAGCACTGATGGTGGGTGGAGTCAGATCTGGTCTGAAAGGGTCAGCACCAGAGTGTGCCATGGTGACTCAGGAGGATGGCGGCCTAGCAACCAGTGTTAGGTCGACACTGCAGTATCGGAGTCTGCCACGACCTTCACGCTCCACCCATAACCGCTCATCCACCAGCAGCATTGAATCGGGATCGAGCAGCCGAGGCCCTGCCATCAATGTTACTGCCTCGACCAATAAGACACGAGAGTCCATCCCCAATGCGAAAACCAATCAGACGGACAAGGAAAAGGGTGGAGTCTCAGAGACGGACAACTTGAGAACAAACGTGGTTGGCTCAAGTTCGACAATTCCACAGACAGCGAGACAAGGAAGTAAATATACAGAGGTTTCATCACCCACACTGCGCagACTTTTTGGAGGTAAAGCTGCTAAGCAGGCCACTGCCACAGAGAACCTGAAGAACTCTGTGGTCATTTCAAACCCTCATGCCACACTGGGACACCACTCTGTGCCCTCCGCTGGGCTCCTGGACTCCCCCTCAGCGGGCAGTAGTGGGGGTGCAGGGGGCAGTGAGCAGGTGTCCAGCCCTGGCTCGGGCTACTCAGGGGGCACGGGCACATGGGGCCACCCCTCTGTCAGCAGCATGCACACCAGCACTGAATCCATCGATATGTCAGTCAGCAGCGGGCATCAGCGAGACAACGGCCACCACCCAATCACTCGCGCTGGAAGTGCCAAGACGGAGAGTCCCTTCTCTTCTCCCTCTGCTAGTCCCAAATTCAGCCGCAACACCTTGCCTCGGAAACAGGACAGGTACACCCCCTCGCCGCAGCTCCGCCCAGAAGAGGCCCGTGATTGGCTGCGTTCGCATTCTATCAGCGGATTGCAGGAGTCGGCCAGTAACTCACCTTTTTCTACCGGCTCCAGTGTGACCTCACCATCTGGGACGCGTTTCAATTTCGGACAGCTTGccAGTCCCACCACAGCAGCTCAGATAAACCTTGTGAGTCTGCGCAACAGcggtctgaccaatcaggacgCAGTGCTGGACATATGCAATGAGGGCCGTCTGAGAAACTCCTGTGTCTCATTGGATGAGAAAAACCGCATCATGAGTCGCTCCGCCTCCTTCAGAGATGGGTTTGAAGAAGTACATGGATCGTCTCTTTCTCTGGTCTCGAGTACATCTTCCATCTACTCCACGAATGAAGAGAAGTCACAGTCAgagatTCGGAAGTTGCGCAGAGAGCTGGACGCCTCGCAGGAGAAAGTGTCGGCACTGACAACACAGCTGAGTGCTAACGCCCACCTGGTAGCAGCATTTGAGCAAAGTCTGGCCAACATGACCATCAGACTAAAGAGCCTCACTATGACAGCAGAGCAGAAggactcTGAGCTGAATGAGTTGAGAAAGACCATTGAGTTGCTAAAGAAGCAGAACGCTGTGGCTCAAGCTGCCATTAACGGTGTCATTAACACTCCAGAGCTCACCTGTAAACCTGAACGCACAGgttctGTGGGCTCAGTCTCAGTTCAGGCAGAGATGTGTATGCGCAGACAGCACTCATCAGACAGTGTATCCAGCATCACCAGCCACTCCAGCATGGAGAATACAGACAACAGTggcaagaagaaaaagaaaaactggGTGTCTGAGTTGCGTAGCTCCTTTAAACAGGCATTCACCAAAAAGAAGTCACCTAAATCCGCCTCGTCCCATTCAGACATTGAGGAAATGAACGACTCACTCCCTTCATCTCCTAAACTCCCTCATAATGGATCCAGCAGCTCCACACCCATGCTCAGGAACTCCAACtcactGTTGCCAGAGGGTTTAGATGGAGAGGCGGAAACTGTAATGCAGCTACGGAGTGagttgagagagaaagaaatgaagttGACAGACATCCGGTTAGAGGCACTTAGCTCCGCCCACCAGCTTGACCAATTACGAGAGGCCATGAATCGgatgcaggCTGAGATTGAGAAGCTGAAAGCGGAAAATGACCGTTTGAAGATGGAGAATCAGGCAAACGGTGGCCGAACGTTAATCACCCCATGTTCCATCACAACTCCATCAAACGAACTCTCACAACAAAACCCCCATGAGTCCACAAGCTTTGATATACTGCTGGATGATTCTGGAGGAGATGGCAGTTTCCGTAAAGATGGCCAACATGTAAAGATCATAGTCAGTTTACAGGGGGAGGATGCTCCCAGGAAAGAGgatTGCAGACCACGGGACTTCCTGATCGGCTGTATTGGAGTTAGTGGGAAAACCAAATGGGACGTTTTGGATGGAGTAGTGAAACGCCTATTTAAAGAATACATCAGGCATGTAGATCCAGTCAGTCAGCTGGGACTGAGCTCTGACAGCGTGGAGGCGTATCGTATTGGGGATGTGATCAGGCCCGGTAGAGCAGAAACGCCAGAACTGCTTCCCTGCGGATACTTAGTGGGGGaaaacaacacaataaacatCTCACTTAAAGGTGTGAGCTCCCAGTCAACTGACTcacttgtgtttgagatgttaaTCCCGAAGCCTGTGTTGCAGCGCTACGTGTCACTGCTGCACGAACATCGCCGTCTCATTCTGTCTGGTCCAAGCGGCACGGGGAAAACATACCTGGCCCAGCGTCTCGCCGAACACCTGACACTGCTGGAGGGacgcactgacacacactctgccATCACCACCTTCAACGTGGACCACAAGTCTAGCAAGGAGCTGCGACAGTATTTGTTGGCTGTAGTGgaacagtgcagtgtggatCAACGCGAAGCTCCTTCAGTTATCATACTGGACAACTTGCATCACATCAGCTCACTGGGGGAGATATTCAATGGCCTGCTTACCCAAACACGCCAGCACTGCCCGTACATCATCGGCACAATGAGTCAGACGACATCTTCATCTCCGAATTTGCAGCTTCATCATAACTTCAGGTGGGTTTTGTGTGCGAATCACACAGAGCCAGTGAAGGGCTTTCTGGGCCGTTTTCTGAGGAGAAAGCTTATAGAAACAGAAATCAGCAACCGAACACGTAATCCAGAGCTGGTGAAGATCATTGAGTGGATTCCTCGTGTTTGGCATCATCTCAACTGCTTCCTGGAGGCTCACAGCTCCTCAGACGTCACTATCGGACCGCGTCTGTTCCTCTCGTGTCCGATGGACGTGGACGGATCACGCATTTGGTTTACAGATCTGTGGAATTACAGCATCATTCCATACATGCTGGAGGCTGTCAGAGAGGGTTTGCAGCTATACGGACGCAGAGCTGCATGGGATGATCCTGCTCGTTGGGTGTTGGACACTTTTCCATGGCGATCAAGCTCCCAGCATCCTGATTGGCCTGCTCTGCTAAAACTCCGCCCAGAGGATGTGGGTTTGGATGGGGGTTCCACCTCTAAAGAGGGCGCTATCAAACAGAACACCCAGAGCGACAGTGATGCTGATCCACTGATGAACATGCTGATGCGTCTGAAGGAGGCAGCGAACTGCTCCAGCACTCAGAGTTACGACAGTGACTCCAACAGTAATGGTCACCATGACGACATCCTTGATTCATCACTGGAGTCAACACTCTGATGCttcattttatacttttattacaAACTTCCTGTGAATGTTTCCTTGTGCCCAGGCAGCACTGATCGAgctgctgcttttatttttatcctgtgCGGGAACTTTatttaaaggaaagaaaattaataattaagaaaattaaaaaaggaaagaaaattaaaaataactgcaCTACTCACAAGTCAACTTGCTATTATGTCAAGTTACAAAATTAGatgacaatttaaaataaaaaacaacaaaattatcCAATACCCATAATGTAACTCATGGAGGCAAAAAGTGAACAGGCTTCATGAgcttaagaagaagaagaagaagaagaagaggaggaggaagaagaagataGAAACTGCACTACTTATAATTCATCTGCAAACACCTGCTGTGATGGATGTATTAAAGAATAGCACATGTCATCAGACAGAGATTTTTCAGAATCCTTACCTCACTATAGTCCACCtataatgtctaataataacaataagtcTTAAAGCTTCACTAAATATCTTCATATCCTAGTTTTGTGTATCCCTGACCTGAAGTCTAAACCTCTCTATCTCTTCTCTTCATATCCTAGTTTTGTGTATCCCTGACCTGAAGTTTTTTTGAGAAACATCAAAACTCTAAACCTTTCTAAACTTCTCTCATACTGCGTTCTGTTGACAAAATGGTGCTATGAATGATTTTGTGCTCTTCGCTACTGTGAATGTCTGGACACACACGACGGTGGCTCACGAAAGTTTATTCTGATGCTGGCCATCATTTTATAACTTAAAGACAAAGGATTGGTGCGTTCTGGGAGACTTTCCGGAGGAGGAAGTGACATGAATTTGTGTACTTTAATTTCCTGTTCTGTAATAGTTTGTTTGCATGATCAGTAATGGTACCTCACCAgcatggagtttttccttttttgaaagGTGAGATGTGTCTAGCAGGCCTGCCTTGCACTCATTCACTACTGAACACCCTCATTCTCTACATTTTCTTCTCCTCGTTTTGGTGCTGAAGAACCCAGTGCCTTACTGCGTTTTGCAATGAGAACCTGAGAGGTGCTTGTGTTCTTATCCTGaacttttcacttcctctcGAGCAAAAGGGCTTCATGCTGCACACCTGAGCAGCTCTGAGTGgctttatcattttaataatgctTACAGTCATCATAGTGCTTATTAAATGcagatgaagaaagaaaacatttggcACAAAACCCTGTGAGACTTTGTTGGGTGCTTTGAAGGAGCTGCACAATGTTGAGTTAAAAagcatgtgtatatgtgagtgtttaTACCTCATTGACTGTCCAGAACTTTACTTTGGCCTTAATTCCCATGCTACACCACTGTGAAGGGGAATGACTTAAAGAGCCCTTATCTTGGAATCCCAaatgttctctggttttctaACATAAAAGAGCTTAATATAGTTTATAAACATTGTTAAAGTTTCAAAATGTATTCCTTGCCTTCCCAGTCCATAAGGTCTATTTATGGAAACTAAGTTGCAAAAACAACCCATTTTAGATTTCTTGTTTCTTCAAAACTCATTTACAGGAACCCACCCATTcgctttacagcaggttagccctgCCCAGTCCTACAGAATTCTGTAGCACTACTTGAGTGAAAGAGGTTGCAGCATGCAGGTAAACCTTGTACCTTGCCATCAGGAAACAAATAAGCTACATAAGTGTCTACATGAGCGTCTGTGTTCTGAATGAGGGCAAGATATGTCCTAACGTTACTGCTGAAGGACGATGCAAGTCCAAATGGACCCAACAGCAGTAGAATAAATAGAATTTCATTTAATGTCTCATTTATTCATGACTATCCAGTATGAATGCTGACTGAGGCAGCTTTATCTAGCAAAGTATGCACTGTACACAAAgagctaacactagctagctatctagatTTCGCCTTGCTGTTTGCTAATTCTATAGCTAGTCTTGTCAGTAACAGCAAACATTCacctatttttaaaatcatttcaacAGCTTTCTACTAGCAGATGCCATTATTTATCTCCCATTATCTCTTCATTTTGTTCTGAGAGATAAAGAAAGGAAGGGAAATGgttgtgtaaaaatgaattatgaCTTTTTGTACATAAAACTACGCAAATATTATAAATGGACTTCAGGGAAAAGatcaaatacaaaaaacaatgtAAGATACGGAACCTTAATGCTAATTAACACCATATCAGATGACTCTTCCGCTGCTTTTATAGACTTTTAGGAAGAGCTAGTAAATGAAATGACAGAAGAAACAAGTGTTAACTTTGAACTCACTTAACACTTGATATCAGGAATTAATTGTGGTTTTGTGTTGCtgattttgtgcagttttttgttaataatgttGCTTACATTCAGCATCTTGATCCTATGCAACATCGTTCAGATTTGAAATGGAAGCCAAATATGGTATCGGCActgccaagtgtgtgtgtatgtgtgtgtgtatttatataaatatggattgtacagtgtgtatataacTTGTGAATAACTTTCAGATTATGATGTGCCTACATTTTATAAAGTTGGATGTAAGTTGATTCAAGCACAGACTCGGGACGTTTTAACTTTATTCTCATTGTTGAATGTTTATTTGCTGTGTACATGATTTAAATACacaacattcattttttttaaatcctccaTTTGGATGAATAAAATTTTACTTACATGTTTACAACAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222076 lncRNA upstream 77775 25175808 ~ 25176089 (+) True G187612
TU222026 lncRNA upstream 131749 25121247 ~ 25122115 (+) True G187563
TU221986 lncRNA upstream 265771 24987879 ~ 24988093 (+) True G187527
TU221763 lncRNA upstream 321818 24931645 ~ 24932046 (+) True G187340
TU221673 lncRNA upstream 447299 24803771 ~ 24806565 (+) True G187276
TU222258 lncRNA downstream 18637 25345291 ~ 25345491 (+) True G187782
TU222386 lncRNA downstream 420456 25747110 ~ 25750632 (+) True G187895
TU222471 lncRNA downstream 591897 25918551 ~ 25919605 (+) True G187961
TU222482 lncRNA downstream 615238 25941892 ~ 25949972 (+) True G187970
TU222672 lncRNA downstream 662144 25988798 ~ 25993403 (+) True G188127
XM_026909972.2 mRNA upstream 53878 25188293 ~ 25199986 (+) True e2f8
XM_026909971.2 mRNA upstream 53878 25189477 ~ 25199986 (+) False e2f8
XM_026910017.2 mRNA upstream 83052 25158861 ~ 25170812 (+) False immp1l
XM_026910020.2 mRNA upstream 83052 25158886 ~ 25170812 (+) False immp1l
XM_034308686.1 mRNA upstream 85682 25158783 ~ 25168182 (+) False immp1l
XM_034308697.1 mRNA downstream 31329 25357983 ~ 25383000 (+) False htatip2
XM_026910002.2 mRNA downstream 48906 25375560 ~ 25383000 (+) False htatip2
XM_034308698.1 mRNA downstream 49128 25375782 ~ 25383000 (+) False htatip2
XM_026910003.2 mRNA downstream 49195 25375849 ~ 25383000 (+) True htatip2
XM_026910021.2 mRNA downstream 60658 25387312 ~ 25448761 (+) True prmt3
TU221326 other upstream 1043139 24207893 ~ 24210725 (+) True glrx2
TU221328 other upstream 1043139 24207893 ~ 24210725 (+) False glrx2
trnaq-uug_6 other upstream 1306801 23946992 ~ 23947063 (+) True trnaq-uug_6
trnaq-uug_5 other upstream 1314976 23938817 ~ 23938888 (+) True trnaq-uug_5
trnaq-cug_12 other upstream 1315484 23938309 ~ 23938380 (+) True trnaq-cug_12
trnar-acg_9 other downstream 179769 25506423 ~ 25506495 (+) True trnar-acg_9
TU222375 other downstream 205091 25531745 ~ 25593503 (+) False LOC113523924
TU222713 other downstream 859208 26185862 ~ 26212109 (+) False polr2l
TU222716 other downstream 880288 26206942 ~ 26210010 (+) True G188164
TU222712 other downstream 883905 26210559 ~ 26212109 (+) False polr2l

Expression Profile