RNA id: XM_026910021.2


Basic Information

Item Value
RNA id XM_026910021.2
length 1657
RNA type mRNA
GC content 0.47
exon number 16
gene id prmt3
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 25387312 ~ 25448761 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCACCCGGAAGAAGTCAGAAGAAGCCAGAATGGCGGAATACACAGATCTCGGTGGTGCAGGCGATGAGGTTCCTGAACTATCCGACAGTGAGGATGAAGACCAGTGGATGGAGGAAGAAGATGAACATGAGACTGAAGAGAGTGTGTTGTGCCTCTTCTGTGACAGGTGTCTCCATTCTGTGTCTGAAACTTTCCATCACTGCCAGGTAGATCACAGCATTAGCATAGCAGATTTGGTgaaaaaacacaGGCTTGATGATTATGGATACATAAAGATGATAAACTATATTAGAACAGTGAAGTGCAGTGTGGAGAGTTTGGCATCGTGTTCAGGCAGTGATGTGCCGTGGAGCGGAGATGAGTACATGAAGCCGGCTCTGCCTGATGACGCACTACTACAGATTGatGTGGAGGAGTTGGGTGGCGACGCAGCGTGTGACGACGTGTCCGTGTGGGTTCAGAGAGCACAGCAGGCAGAGGAGAATCTCAGCCGTGCCATGGAAGACCTGCATAAACTCAAAACATTTGCACAGGGCCTGGTGCTGAATTCGGACATGACACAGAAGTGTGTAGGGAGTGTAGCAGAGCTGCGAGAAGATGAGGACGAGGCCTATTTCAGTTCTTATGGGCATTACAGCATCCACGAAGAAATGCTTAAGGATAAAGTGCGCACTGAGAGCTACCGGGATTTTATGTACAGCAACCCAGATTTGTTCAAGGACAAAGTGGTGCTAGATGTGGGTTGTGGTACTGGAATCCTGTCAATGTTCGCTGCTCGTTCTGGGGCCAAGAAGGTCATTGGtgttgaccaatcagaaatcaTCTACCATGCCATGGACATCGTCAGAGCTAATCATCTCGAGGACACAATCACACTGATTAAAGGCCGGATAGAGGAAGTGGAGCTTCCGGTGGAGAAAGTGGACATCATTATTTCAGAATGGATGGGCTACTTCCTCCTTTTTGAGTCAATGCTGGATTCAGTGATCTTCGCCAGGGATCGATACCTCGCAGAGGGAGGTTCAGTTTATCCTGACCGATGTAGCATTAGCCTAGCAGCAGTGAGCGACGTGGAGAAACACCGTGGTcacattgcattctgggatgaCGTTTATGGCTTTAAGATGGCATGCATGAAGAAGGCAGTGATTCCTGAAGCTGTGGTCGAGGTTTTGAAACCTGAAACAGTCATCTCAGAGCCGACTGTTATTCAGACATTGGACTGCAATGCTGTCACTCTCTCTGAGCTGGACTTCACTGCTGATTTTACCCTGAAgataacagcaaacacatccTGCACCGCTGTGGTGGgctattttgatattttttttgacCGAGACTGCACAAACAAGGTGATGTTCTCCACATCTCCTCACTGCACTAAGACTCATTGGAAGCAGACAGTTTTCTTTCTGGAGAATCCTATTCCCGTCCAGTCAGGTGACGAACTGCCAGGGCGAATAACAGTCTGTAAAAACAGGAAGGACCCGCGAGCGTTAATTGTTACGCTAAACATTGCTGATTGGAAGCAGACATACTGTGTGCAGTAAACCTCAGAAACACTGATGGTTTTCATCATGGGGCCAAACTGCTTTTTGATCAGAATTGATGTAGAATCATTTTAGTCTGCAATAAAACTCTGGCAAAGAATTTGGA

Function

GO:

id name namespace
GO:0006479 protein methylation biological_process
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity molecular_function

KEGG:

id description
K11436 PRMT3; type I protein arginine methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222258 lncRNA upstream 41821 25345291 ~ 25345491 (+) True G187782
TU222140 lncRNA upstream 96338 25290513 ~ 25290974 (+) True G187675
TU222133 lncRNA upstream 114713 25272276 ~ 25272599 (+) True G187668
TU222076 lncRNA upstream 211223 25175808 ~ 25176089 (+) True G187612
TU222026 lncRNA upstream 265197 25121247 ~ 25122115 (+) True G187563
TU222386 lncRNA downstream 298349 25747110 ~ 25750632 (+) True G187895
TU222471 lncRNA downstream 469790 25918551 ~ 25919605 (+) True G187961
TU222482 lncRNA downstream 493131 25941892 ~ 25949972 (+) True G187970
TU222672 lncRNA downstream 540037 25988798 ~ 25993403 (+) True G188127
TU222720 lncRNA downstream 660862 26109623 ~ 26109848 (+) True G188168
XM_034308697.1 mRNA upstream 4312 25357983 ~ 25383000 (+) False htatip2
XM_026910002.2 mRNA upstream 4312 25375560 ~ 25383000 (+) False htatip2
XM_034308698.1 mRNA upstream 4312 25375782 ~ 25383000 (+) False htatip2
XM_026910003.2 mRNA upstream 4312 25375849 ~ 25383000 (+) True htatip2
XM_034308566.1 mRNA upstream 60658 25245693 ~ 25326654 (+) False nav2a
XM_026910028.2 mRNA downstream 6947 25455708 ~ 25484810 (+) True slc6a5
XM_034308863.1 mRNA downstream 7826 25456587 ~ 25484810 (+) False slc6a5
XM_034308508.1 mRNA downstream 82993 25531754 ~ 25696872 (+) True LOC113523924
XM_034308509.1 mRNA downstream 82993 25531754 ~ 25696872 (+) False LOC113523924
XM_026909993.2 mRNA downstream 475419 25924180 ~ 25930589 (+) True tollip
TU221326 other upstream 1176587 24207893 ~ 24210725 (+) True glrx2
TU221328 other upstream 1176587 24207893 ~ 24210725 (+) False glrx2
trnaq-uug_6 other upstream 1440249 23946992 ~ 23947063 (+) True trnaq-uug_6
trnaq-uug_5 other upstream 1448424 23938817 ~ 23938888 (+) True trnaq-uug_5
trnaq-cug_12 other upstream 1448932 23938309 ~ 23938380 (+) True trnaq-cug_12
trnar-acg_9 other downstream 57662 25506423 ~ 25506495 (+) True trnar-acg_9
TU222375 other downstream 82984 25531745 ~ 25593503 (+) False LOC113523924
TU222713 other downstream 737101 26185862 ~ 26212109 (+) False polr2l
TU222716 other downstream 758181 26206942 ~ 26210010 (+) True G188164
TU222712 other downstream 761798 26210559 ~ 26212109 (+) False polr2l

Expression Profile