RNA id: XM_026910023.2


Basic Information

Item Value
RNA id XM_026910023.2
length 6767
RNA type mRNA
GC content 0.41
exon number 13
gene id helz2a
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26099524 ~ 26138619 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAACTTTTGTTTCCTGAAAGATGATTACAAGCATTTCTGTGATTACTGTGAATACATGAATATACACCAACGTGATATGTCCATTCCCATTCTAAACCAATTTCTGTGAAGGCAAACCAGTTTTTCAGTGATCAATTTTTCAGAGACTCTTGTattggtcttttttttattttaacattctCTCATgtttcaaatgtaatatgagagaatttaagagcaaaattaaaaaaacttctacagtccacattttctagcCCCCAAGTGCTTGTGTTTCAAGCCAGTGCTctagatgctattgaaaaaaattcatcttGGACACcgctactcaagaaaaatctggccaCTTCGGAGGCGTGATCGCCCAGAAAATCAAGTTAAACAGCTGCGTAACCCAACtccatgtaaatattgacataactttgAAATTAAGTCACCAGCTCTGAATCTGGCCTTACGATACGGAGCGAAAGAGTTAAGTCATGTGCACCTTACTAGAGGGAGGAGTGATATCATGTTTCATACAAATGTTTCAGCCTGATGGAGTTGCCGTCGCATTCTTAAGAGCAAAACAATCAGTGAGGACAAACTATGGGGGATAAACTGTTTCCAGGACAAACTAAGTCCTCAAAATCAAATTCTAAAAAGGCAAATGTGTCTTCTTGTAGGAGAACAACTCCTGAGGAAACCTTAGAAATCCACGAGGCCCTTTTTAAGCACTCAATCCGAGCTTTCCAGTGGGAATCTGTGTTTGAGCAAGAACACAGTCAGGAGGAACTGGAAGAAATGTTGACTACCAAACCTCACGAGTTCAAACGCTGTAAACTTAAAATGGAGAGAGATGATCTGGCATATGCCAAACCTCTCAATGATCCAACCTCTGTCATCTGCATCAGTGGAAGAGATTATGTGGGCAGATCTTTTCCTGGTGATCAGGTTTGTGTTCAGATCTTGAGCAGAGAACTTCAGCCACATCAAGGTGAATCATTGAAAGGGAAGGTAGTCGGATTGATGCAAAGATCTGAAGAATGTTGTACCATTATCTGTAGGATGGAAGGACGTAAACGACTAGTTACACCTGTCAAGAACAACATGACCAGGATATGCATCCTTCAAAAAGAGCCAGACAAAATAGAAATACGAAAGCTCAATCCCCAGAGTGGATACTGGTTCACTAAGAAATATATAGACATAGTTGAGGATCAACTATTAGTTGTCAAGGTGCTGAAATGGGAAAAGAATCGTAGGTATCCTCTTGGAGCGGTTACAAAAGTTATCTCACAGGAAgagtattttaatgaatttctgaAACTAGAATGTGGCATTAAAGACAATCCTCCCTCTTTCCAACCAAGATGTGACCAAGAGGAatatgaaaaaagagaggatttCCGCAATCACTTAACTTTTACTATAGATTCCAGTGAAGCTCAAGACTTGGATGATGCCTTTAGTCTGACTGACAAGGGAGAACAATATATGATTGCTATTCACATTACTGATGTAGCAAGTTACATCAGGAAAGACAGTGAGGAGGATATATTTGCAAAGAAGCAAGGTAGGACATTTCACCCTCCCCCTGAAGTGAAAGCAACTCCAGCTTTCATGCTTTCCCGAGAAGCAAGCTCTGAAGTAAGCTTACTCCCGGGTGAGACCCGAAAGGCCATATCCTTGGTAATAATGATTAACAAGGAGACCAGTATGATAGAGTCCAGCTCTTTTATTCTTTCCCGCATAAGGTCTGACACACGATTATCATATGAAGATGCAGACAACATAATACAAGAGCGTTGTTTGGATGATAATGAGGCACCTCTTAATTTTTCCTGTGTAGAAGACTGTGTTGCTGTGGCCTATTGCTTTACCAAGGTACTTAGAAAGTTCAGGTTGGAGGGGAGCTGGAGCAGTGGACAAAGAAAAGGAGACAGCAGGGCCCACTGCATGGTGGAAGAGCTAATGAATTTGTACAACAGTGCAGTGGCTGAAGAACTCATCTCCAAAGACCTAACAAGAGATCTCACCCCACTAAGATGCAACTTCAAGCCAGAGCCTGGACTGCTTGAGCAGTTTAAAATGAAGTACTCTATGCAACTGCCCTTCTCTCCTTATCTCTCACAAATCTGTGAAGTTGCAGGGACAGGATTTGAAGAAACCAAAGCAGAGATGTTCATTAAAGTTTTGACACCTGTGTTCCAGCAAATGGAAGCCTTGGCACAGAAAAGAGATTACCACAGGCTGGTTCATCTTATTATATCGGATGAAATCCATCCTACACTATGTCACATGGCAAAAGAATTCAAGGAAATTCAAAGTAAATCTATCATCCTGAGGTCATGCTCCAACTTGTCCTCAAAGTTAGGACATTATGACTTGCAACTCAATGCATACACATGGGCTTCATCCCCTATGAGACGCTATTTAGACCTGATACTTCAGAGGCTTCTCCACAGTGTGCTCTCTGAAAAGTACCAACTAGACATGGATTACACGAAGGCTGAAATTGATCTGTTCTGTGATGAATGTGATTGTACTGAAGACTTTGACTTGGAGTCATTAAGATTCATCAATGCCACTAAATCTTGTTCTAGAGATGTGACCAAACTGGCAGTAGTGGACCAGCTTTCTCCAAAAGAACATGCATTTATTACCTCAATTCCTCTTGACAGAGTGTCATGGCTGATGATCAAGTACAGAGACCTAAAAGTAGTTGAGCAGCCAGAGTACAACCATCAAAATAATTCCTGCACTCTCAACTGGAAAAGAAGAGTGTATTCATTTAGTAAGACCAACAAGCCACAGCCTCAGTCAGAGATCAACAAAAATGTAATCCCAATCTCAGTTAAAAATTGGACCAAAATTATGTCTGCAGTTAAAGCTGAAGACTGGGCTAAGGTCAGTGAGTACCTTCAAGATGtaaaagaatataatataaaatctatGGTAAATTCAAATGCTGGTCCAAATGGGCAGAATCATTTTACAGAGTGGAAAATGGAACTCAAGTTAGAAGAAGTGCTACAAGTGCAGCTTGGATCAGAAGTAGTCAATGGGGCAACAATGCCTGCAGTAAATCTCCTCACTGTCAGTGCATTCTTTGAGGTCTGTTTGGAGCATTCAAGAAACCCAATCAAGTGTTTCACCACCACAGATGACACATTATGTCATGCATCCAAAACAGAATACTGGGATTATAAGGAGTACCAGGAAATTTGGGGAAAACTCTGTCAAATGGACACTGCTTACAATGCTGTGGAAGAAAATAATAGTGTGATTCTTGAAGATGTGACTATAACATGGACTGGAACCACAGAGACGTCTCTCAAAGGTTTCTTtaaaatgacacaaacacagacaaaagacTGGTCTCTGGAATTTGATCTAACAAACTGCTACCTGTGCATCAGATTGAGGGATCCATGTactgaaaaagaggaagagacagaagcAACACAGTGCAATGGCTCTGGtctttctgatttgcagaacgCGCTGCCCTTTACATGGGTTGCCCATGGTGTACCTACCAAATCTCAAACACAAAagcaaggaaaggaaaagaagacaAATTTAAAATCACCAATCATCCAAATAAATTTTCAAATAATCCAccaaaatatgacaaatattcCACCTaaacttaaaaagaaggaaacaaaGTTCACTGTAGAGGTCATTCCAAAGAAAATTCcatatgtgCAATATGAACATGCCatagaaaacataaaaagagcTAATGACCTGGTGAAGAGCATTGCAACCGGGACAGTTTTCAATGCTTCCAGTGAACCTGAAGAGCTACATTCAGTGGATGACATGGATGACAATCTGGACCTGCAGCTGTTGAATGAAAGTCAGGAAAGGGCTGTGCAGGAGGCTTTGAAAAATCCTTTCACTGTGATCCAAGGACCACCAGGTACTGGGAAAACTGTGGTTGGGGTTCATATTACATATCACTTTCACATGAAGAATAACGCTCTTGAAGCGGAATGTCCAAACCAGCCACCAAGTCTGGTACAAGATGCATCTCTAAATAAGAATATACCACCAAAGAAGCGTGGCATCCTGTACTGTGGTCCGTCCAACAAGTCTGTGGATATTGTGGCAGAGCAGTTGTTGAAGTTAAGAAGAGTCCTTAAGCCTCTTCGGATCTACTGTGATCAGATGGAAATGCGGGAGTACCCATATCCTGGAAGTGAACTAAAGCTCTGTCGCAGATCCCTCCGTGATGAGAAACCAAAGGAAGTactcagAGACATCTCTCTGATGTACTTGGTGCGACTACCTGGAAACCCCTACGCAAAGGAGATAATAGCTTTTGAAGATGGCACTGTTGAATTTGACACTGGAAGatACAAGGAAGTGCTGAAGAAGGCTCAGAAGCACGAACTCCTGAAGCATGATGTAATCTTGTGCACCTGCTCAACGGCTCTAAAACCGATCCTAATGCAGACCATGGACTTCCGACAGATCCTAATTGATGAGTGTGCCATGGCCACAGAACCGGAAGCCTTCATTCCTTTAGTCTCACATAAACCCGAGCAGATTGTTCTTTTGGGTGACCACAAACAGATTCGGCCAATTGTGACATGTGCCCGTGTGAAGGAGCTTGGCATGGAGAAGTCCCTCTTTGAACGATACATGGACCAGGCATTGATGCTGGACACACAGTACAGAATGCATGAGAGTATCTGTGAGTTCCCCTCAAATGAATTTTATGGTGGAAAACTGAAGACTGGAACTAAGCAAAGAACCTGCCTTCTGCTTGACAAAAATAACAGACAAACTGCTATCCTATTTGGTCATGTTGAAGGAGAAGAGATCAGTTTAGCAGTTTCCACAGCAGCTGGAAATGAACATTCAGTAGCCAATGAACTGGAGGCAAAGCAAGCGGTTCGGGTTGCAAATCTGTTAATCAGTCAGTCTCGTGTGAAACCAGAGGACATTGCCATTCTGACTCCCTACAATGCACAGATGTCTAAAATCAAGGAGATGTTGGCGCAGAAGAAAGATCAGGCCATACAGGATGTCAGTGTTTGTACAATTATGAAGAGCCAAGggaGCGAGTGGCGTTATGTGATAGTCTCTACAGTCCGTTCCTGTACACGTTCTGAGATAGAAAAAGAGTCGTACACCAGCAAAGGGTGGCTGGGGAAGAAACTTGGCTTCACCACAGACCCAAACCAGGTCAACGTCACTATCACGCGTGCTCAGGACGGACTCTGCATTCTGGGTAATCGTCACTTACTGAACTGCAGTGAGCTGTGGAGAAGACTGCTGTCTCACTACCGGGAAAAAGACTGTATACTGGACTCAGCTGAAGACATTAAAGTCGTCAAAGTCAGGCGTTCTTGACCATGAGTACTTTTGGTCGGAATTTGTGAGCTGATTTAGATGAAATGTGAAAAGTGTAACTAAGAAATGGTGCTTAAATCTGTAATTCAAGAGATTTTACCCCTCTCCCACTGTCCCAGAAATGTGAGTGACTAACAAATGTGgttataaatagtaataatattgaAATTATGTGGAAAAATCAGTGATGAAATATTCAGTGTTCAAGCATGagtaatgttatttttacatCTAGCTAAAATAACTGCCACTTGTCAACTCAATTTGATTGTCATACATCTTGTTATTTATGATCATTGACAgggactcacacacacacacacacacacacacacacacacacatacacacagtcaggaaAGTTACTCTGAGTTACTCAGCTCAGAGTTTTGCATCCTAAAAGCTTTatcaccataaaaaaaaaaaagtataatcatcATTCTGATGTTAAAACTGTGTGAGATTAATATACCAGTGCATATAATACAAATGCGTGACGTAAAAAATCAATAAGAACTGAATCATGCACAAGGATTACAGTAGAACAGCCTCATTAAATAgcagaataaatacatttaaaaaaaaatacaaatcaaattcaaattataCTCATCCAATCCCTTAATAACGTGCAACTGTGCCTTTAAATGTTGAGCCACGCCTCCTACCTGAGTATGAGTCTTGCACACAGTGATACCAATCTATGTGCTGAGAAAATAATATGATACAGACTTCAGGGTGACCCTTACTACTGTTTTTCACTCTGAATCGCCCCTTCGTCTATTTCTGTAGATAATATTGGATCATACAtcacaaatcagtagcctgggcGCCCGGGAAAAAGCATATTTATCGAGACCGGGTGAAGTTTTTTACTCAGAGTTGCCCAGAGGAAATGAAGGTTCAATAAGTTAGAGAAAAAATCagacttttgcaaaacaaagGTTTTCACTTAATTCGTAGTAAAGTTTAAACGTAATGCACTTAACAGTGTGTGATGCACACTGATGCTCTAACTGGTTCCGAATCCcaccgcctgctgcactacacacagacGAGGCACAATCTTTGTTATTATCGACCAGTAGTAGTCACATAGTCATGTTTTCTGTGGATAGTGCTTTCTTTATCTCACTGTTTTTTCAACACCACGACTAATCTACGCTAGCTGATATAGGGATATAAGAGTAATCTACAACAGTTATAAAATTCTATTAAGAAATGTAAAGCAAATAATCTTTACATTGAGACTTCTTCACCTGATGTTTGTACCTCCTGCAATCCAGAGAGTGTAGCCCTGTACTATAGATCTATTTAAAGAGCAATATATCGCCATGTAAACATCAGTCTGCGTGCGGTTTCAGTCGAAAGGATCTTCTGCTCGGGCTCACCAGATGTCTAATGTTTATGAAAAATCC

Function

GO: NA

KEGG:

id description
K25165 HELZ2; helicase with zinc finger domain 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222720 lncRNA upstream 9560 26109623 ~ 26109848 (+) True G188168
TU222672 lncRNA upstream 126005 25988798 ~ 25993403 (+) True G188127
TU222482 lncRNA upstream 169436 25941892 ~ 25949972 (+) True G187970
TU222471 lncRNA upstream 199803 25918551 ~ 25919605 (+) True G187961
TU222386 lncRNA upstream 368776 25747110 ~ 25750632 (+) True G187895
TU222731 lncRNA downstream 14910 26153529 ~ 26166792 (+) True G188179
TU222738 lncRNA downstream 22695 26161314 ~ 26164756 (+) True G188184
TU222739 lncRNA downstream 23689 26162308 ~ 26164756 (+) False G188184
TU222764 lncRNA downstream 80312 26218931 ~ 26222921 (+) True G188202
TU222766 lncRNA downstream 81816 26220435 ~ 26222921 (+) False G188202
XM_034308692.1 mRNA upstream 24270 26083657 ~ 26095138 (+) True slc38a7
XM_034308780.1 mRNA upstream 56752 26039386 ~ 26062656 (+) True LOC113523928
XM_026909993.2 mRNA upstream 188819 25924180 ~ 25930589 (+) True tollip
XM_034308508.1 mRNA upstream 422536 25531754 ~ 25696872 (+) True LOC113523924
XM_026910854.2 mRNA downstream 71929 26210548 ~ 26212115 (+) True polr2l
XM_026910859.2 mRNA downstream 85198 26223817 ~ 26227916 (+) True LOC113524556
XM_034308614.1 mRNA downstream 102453 26241072 ~ 26244720 (+) True LOC117598406
XM_026910874.2 mRNA downstream 121911 26260530 ~ 26352035 (+) True syt7b
XM_026910875.2 mRNA downstream 121912 26260531 ~ 26352035 (+) False syt7b
TU222375 other upstream 525905 25531745 ~ 25593503 (+) False LOC113523924
trnar-acg_9 other upstream 612913 25506423 ~ 25506495 (+) True trnar-acg_9
TU221326 other upstream 1908683 24207893 ~ 24210725 (+) True glrx2
TU221328 other upstream 1908683 24207893 ~ 24210725 (+) False glrx2
trnaq-uug_6 other upstream 2172345 23946992 ~ 23947063 (+) True trnaq-uug_6
TU222713 other downstream 47243 26185862 ~ 26212109 (+) False polr2l
TU222716 other downstream 68323 26206942 ~ 26210010 (+) True G188164
TU222712 other downstream 71940 26210559 ~ 26212109 (+) False polr2l
TU222884 other downstream 122058 26260677 ~ 26318575 (+) False syt7b

Expression Profile