RNA id: XM_026910028.2


Basic Information

Item Value
RNA id XM_026910028.2
length 7421
RNA type mRNA
GC content 0.39
exon number 16
gene id slc6a5
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 25455708 ~ 25484810 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTGCACAAACCAAATTCACTTCTGCCTGCCCGCCCGCGTGCTGCTCCCCATCCGGCCGgccttttattatttatttttttattctgtctcCGCATTTCGCCTGCATTGGTGCGCACATGGATTTCTCCGAGCAGAGAGACATGCAGAGGCAGCTGCACGAGAGCGCGGTCGGAGTTGCCCCTCGTGTCCCAGGGGACGCGGTTCAATCGCCCCCTGATGTCACCGAGCGCAAAACGTTCTGCCCTGCGGAAAAGAAATCCGGAGAAACGGATTCCAATAAAGTGTACGGGACGTTTCCGAGCGGAGCGCCCGTTCCTCCCCCGGTTCCTGCCCCTCATAAGGATGCCTCCGGGCCGTTTTTACCCCAAACGGATAAAGCCATGTCGCAGAATAACTGCCCCTCCTCCGCGAAACAAGGGGCAATGGTGGTTCTGGGCACAGATGGCACTGCGTCTGTTCAGCTCAACCGGGAGGAACAAGATGATGATGACGAAGAAGGTGATGAGAATAAAGCAAGAGGAAACTGGTCCAATAAGCTGGATTTTATTCTCTCTATGGTGGGTTATGCTGTGGGTTTAGGAAACGTGTGGAGGTTTCCATATCTCGCCTTTCAAAATGGAGGAGGTGCGTTTTTGATCCCGTACCTGATCATGTTGGGTCTCGCTGGAATTCCCATCTTCCTTTTGGAAGTTTCTCTGGGCCAATTTGCCAGTCAAGGACCTGTTTCCGTATGGAAGGCTATTCCAGCTTTACAAGgttGCGGGATTGCCATGTTGATTATATCAGTCTTGATAGccatatactataatataataatgtgctGGACTCTGTACTACCTGTTCGCTTCGTTCACTTCGTTGAAGGGCTTATTGCCATGGACTTACTGTACAAACGAATGGAACACAGCTGAGTGCAAAGACAAAGACATGATGCAGCTAGATTCCTGTATCCTTCGAGACAGAAACATCACCTCCATTAGGAACACTACATTTTGTTTGTCTGCAAATGCTGCTGGGAGTTTAAGCAAGCTGTTAAATATCACAACGGATAACAGAACCTACGTCAGCCCCAGTGAAGAATATTTCAAATATAATGTGTTGCACATTTCCAAAGGGATTGAGTATCCAGGAGATATCCGCTGGCCCTTGGCTGCTTGTCTTTTTCTGGCATGGCTCATTGTGTATGCTTCCCTGGCTAAAGGAATCAAGTCATCAggcaagGTGGTGTATTTTACAGCTACCTTTCCATACGTGGTTTTGGTGATTTTGTTGATCCGTGGTGTGACGCTGCCTGGTGCAGGATCCGGTATCCTTTACTTCATTACACCGAAATGGGAAAAACTCAATGATGCCAAAGTATGGAAGGATGCTGCCactcagatcttcttctccctctctgcaGCGTGGGGAGGGTTAATCACTCTCTCCTCATACAATAAATTTCATAACAATTGTTATAGGGACACTATAATAGTGACGTGTACAAACAGCGCTACCAGTATTTTTGCTGGTTTTGTGATTTTCTCTGTCATCGGCTTCATGGCTCATGAGCTTAAGGTGCCGATCGAAAGAGTGGCAGATGAAGgtcctGGCATTGCATTTGTGGTTTATCCAGAAGCCCTCACCAGGCTGCCAATCTCACCATTTTGGGccatcattttctttctcatgcTCCTCACGCTTGGACTGGATACCATGTTTGCAACCATCGAGACTATTGTGACATCTGTAGCTGATGAATTTCCCAAATATCTGCGCAAGCACAAGCCTCTCTTCACCCTGGTGTGCTGTGTGTCCTTCTATATTCTGGGCTTCCCGATGATAAATGAGAGTGGCATGTACATGCTTCAGCTGGTTGATACCTATGCAGCTTCTTATTCTCTCGTCATCATAGCCATCTTTGAGCTAATTGGAGTTTCTTACATCTATGGCTTGCAGCGATTCTGTGAGGACATAGAAATGATGATTGGTTTCCAGCCGAACAGGTTCTGGAGGATGTGTTGGGCTTTTGTAACACCTACCATTCTCACATTTATTTTGGCGCTGAGTTTGTACCAGTGGAAGGTGATGACCTATGAGGACTACACCTACCCCACCTGGTCCATGGTGCTTGGCTGGCTCATGGTCATCTGCTCTGTAATCTGGATCCCCATCATGTTCGTCATCAAGATGCACCTTGCTCCAGGAACCATCATcgagCGATTGAAGCTTGTATGTTCTCCTCAGCCAGATTGGGGTCCTTTCTTGATGAAGCATCGCGGTGAGcgatataaaaacatgattgACCCACTTGGAACAAATTCACTGGGGCTCAAACTTCCTCCTAAAGACTTCCAGCTGTCTGGCCCTTGACCTCTAATCCATGACCGTCGCCCTCTGACCTTTTGACTTCATTTGTCTACCCTCAATTTCTATTAATTCCTCAGTACGCACTAATCAACAGACTTGGCTCGAACTCACTGGGGGCTTAAACTCTGTTTAAACTCTTCCAGCCACTTTGACCGTTGTTTCTTCAACTTCAATTTTCTACCTTCAAGTTCTTCTTATTCCTTCCTCCTAGCAGGAAAAACCTCTTTCTCTTATAACTTTTCCACTCTTTCCCATGTCTTCACTGTTCCCTCTTCTCTCAAAATCTCaagttctttttctttcttctgggCTGCAAAGCCGCTATCATTTCAGTGGTGGATATCTTGTACACACCCTTCTGCATACTTTTTTCACCCTCTcatacacaaacaaactgtCCTGAAAATCCCCAAATCACATAAGGAAGATggacttttatttatatttaaaggcTTATTCCTTCTCTTTACCTGCTCTTTAAATCCGTAACTTTGTGCCTCTGACCTCTTCTGAATATACCaataatagtttttattttgtgcagcACTTTTCTGTCATTTAAGGTTGCTGTACAATTCAGAATAAATATAAAGCTAGAAGAACAGCATTATGCTAGCTTATAAATCCTATATTCTTGCATTACAAGAAGCACAAAGCTAGTTGCTGATTTCTTTCAATTATTTAATCTCTAAAAACTGTATGCACATTAATCTCTCACATTAAATAGCAGACAATTTCAGCCATAATGTTAAGAAAACTACTCAGTGGCCAGGTAGCATTTATTTGTGAAAGCATATATATTTAACGCTACATGTCTGTGGTCTTTACTTGGATTTGCTGTGTCTTTTATGCAAAAAGGAGAATCTTTATGATATAAATCCATATACATGTTTAAAATCTACACTGACATTGTGGCATGTGTGCTAACATGTGTGTCGTTAGCTGTGCGGctgataaatatgatatttatatattttagatagTCGTAGTTAGTTAAGCTGTGTGTTAAATGTCATCGCCTTCCTTCAATGTCAGTAGATTACAAAAGTAGTTATTTGTCTCTGAGTAAGGTGTTTGGGGatatttctccttctctttcacaTCTGTCGTCGAAGTCTTGCCATGAAACAGGGTCTCAGGTATAATTGTCATTGGCCTTATTTTTCTGAAGAAGTAGATTCATTTATCCTTTTTACTTGCAAAAACTCTAAATTACTTTTGGACTTTCAAATGCTTCTAACATAAAAACAGGTTTCagagatggataatgaccctatatatttctataatcAAATTTCTAGCGAGATAATAATGTGCTTTTCCTCACTGAATGATGAAAGGGTGAATTTAGATTATTCAGACCCATatctttctttaatatttatttaaatgcagaaGAATAGCTACAAATGAGAACAGCATACCTGTCGTCACTTGTTGTTAGCCAACAATAATCAAAAAGATGGTGTACAGACAGTGCACATAGACACTGTACTGTAGACTATTAAGTAGCTAGCTTATAGCATGCTAGCAAAAAATAGGTCACTTAGTGATAACATAAATCAGCACACTATACTAAAGCCTGATAGGGGACGCAGGAACGTTAAAGACATATGACGTCTATGTTACAGATATAGTAAGTAACTTTCACTTCATGTGAAGGTTACATTCTTTAACCAGTTCATATCTCACATCCATGATTTAGTGAGACATCTGATGTATAATAACACAGACAATAACACTATATCGTCTCTGGTCAATAGTCATATTCACACCTGGGGACAATTCTTAAACATTTGAAGCCATGAGGAAAATGACCTTGTACTACAACTCAGaggtttaatatatatatatatgtataattctAAAGCAATCAACGATGATTATCTAAAAATAGCTACAAAAGCTGAAGCCTAACACTAAGATTTACAGGTGTGTCCAGATTCACCGCATGCTTTCTCACACCGTGAAATGAAGTTTGACTTGCAATCATATGTCATATGTTAGACTCTAAAGATGAGGTgtcatgagaaaaaaataatagtatatatataaatatattctatGTATATGAATTGCTTTAAGTATTTAGTACCacaaaatttgtgtgtgtgagtgtgtgtctgcgtgtgtctAAAAGTGCATTCCTTAGTAACTATGTTCCTAAATAGCCATCTAGTGTTAGCAGCCTGGGATAGACGGCAGATAATGAAAAATATCTGACAGTCAGTGTAGCCTATATAGTGCAAAAATACCTTGTTTAAATATCTGCTTTTCCCTCAGGAAAAAATGCAGGTTTGTTAGAAAGCTCCAAGAAACTGGACAGACGAGTCAAATGGcctctttatatatttatcactACTCAGTGCTGTGGTAATATTGTACCATTTCTCATGCTTACAATAggcaaaaacagtaaaatatcaTTAGAGTCCACAAAATCAGGTAATAGCTTCCTGGGGCAATCCTGCTGTTATgccatgtactgtatatcaatCAAGTGAACTGTGGACGGCTTTTGCCATGACCCATCCATGTCTTGTATGTTAATATGTCTAGACATGTGTCTTTAAGAAAATGGCGCACAGTTCAGGTGGAATAATGTCCCAGACAATGCAGTATAAAATTATGTTATATGGGGCAATAGAGAAATATTAGTATGATACCATACTTCAGTTAAACATCCATCAAAGCTTAAATTAGACAGTAATGAACTCACTCGAACAGACTGATCCAGAACTATCTGGATGTGGATTTTAGTCACACATTGCTCAGACCCAAAGAGACCATTTATGCAggtgcactattttttttatctgatgaAGGCAGTGTGAGAATTACAAGCATCATCAGCCTTGTGATTGGTAAGGGCCATGATTAAGCAAGCTTTACACAAGATTACCCCTGAACGCTCCATCAAAAGGGAGATGTTAGGACAAAATTCTGCTTGTAGACATTGGATAGTCATTTTTATACTGCATACAGTGAAACAAGATCAACATTAATGATCATGCATTTTGGTCACTGAAATCACAACCTGGGGAATTTAATGCAATGTCCTGTCCTATAGTCCAtctcaaacaaaacaaaacaatatcacTTATCTTCATtatgtttaatataaacatagaCATAGACACATAATCTGTAAATTAATTGCCTTGTATAAATAACATACAATGTTCTGCCTAAATGTtctggaaatgaaaaatatctaTGATGACATTCAGTGTGTACTGGATAAGCTATATAGTGcaaaaatgtcatctttaaaCGTCTGTTTTTCCTCCAGAATGCAAAGTTCAGATTTGCTAGAAAACACTTTTTGGCAAGTTGACTAGAGACTCAAGAGATTGTGTGAGAGCCTCTTCATATATTTATGTCTTTATAGCTCTATATTTCTGAGGGCAGACCATGTCTTCAACTAAATGGGTTGGAGAGTCACTGTAGAACTGCAATAATGAAGGAGAACTCTGTGATGTGAGCTGAAGTTCTGGACAGCTTCTGCTTTGAGCTAGATTGACAGGCCCCCCAATGAGACGTCCTGGGTACAAGTTGTTGAATAGTGGAGGAGGTAGGGAGTGCAGGAACTCTGCCACATGTAGAGAAAGGGAGGAATGGAGATTTGTAGGCAGTTTATAGGCAGTTAACTACAAAGAACTTTAGATGTGCTCTTTTTCCAAAACTtcaattatttcataaattcatttcaaatgtcTGAACACCATAGCCAAACACAACAGTATTTACACAGTGCAGAAAGCAGAGCAAATAAAAATTGTTCATAATATTCATCTCCATATATAGAGTGTCccaaatgctagcatataataTGAACATCGTCTCTTACTGTAGAGGATTTACTGTAGCCTgttaaatagctagctaacagcatTCTAGCCTTCTAATAGTTGGCTAATAATAGGCTAGGGTTTAGGATGCATCCAAAGAAAGAAGAGTAATTAGAAAAGATTGTCATAGCCTGCAAGAGCTTAGAATGGAGACTATGACTTGTAATAGTTTTGTTGAGCAGTGATGTAATATTCAGCATAAAATTTCGCTCTCTCTAGGCCTAACGTCTCTCCTTTCTCTGAAGCCCacctgcaaaataaaaacacaaggaCACTAAATAAATAGCTAGCTGACTGACTTGCATGCgctgtttgtgtttatctgtgCTATTCCAGTGTTCTTTTGTCCTCTTCTttatctccttttctctctccctttctccttctttctctcctttgcATGCATTCCTCACATCAGGACAAGCTggctttaattttttaatagatttttttccccttcttaaaaaaaaaaaacaacaataaaaattaataaataaatgcctatGGTCCAACAAGGGCCAGTAGGTTACCAAAGAAGGagaattttgttaaatatttattaaataaaagataatatctacatataaactatataaatagCCTACGTATATATATGAAGAAGACAATATTAAGCTATGTGTTTAGGAGACAGAGATACTGCCACTCATTTTCCATGTAGTGCTCACTGATGTATGTTCAGGTCAATCAGCCTTAtaggtaattaaaaaaaaatatatcatatgtATTTCAAAAATATCAATACCAAGTAGCTTCTAGTCAGTCATATATCTCCATATAGATCTCTAATGTAATGTCTGTTGTGTCTTTTGGCACTTTATTGTGGACCTATCATTGCATAGGTAAAATCTCTAATtacatatgtaatatatatttctgtgtgttttattaaagagaGGGAAATCTGCCTATGGATACAGATACGTACCTCCAACACATCATAATATgggtttaaaaatacaaatatatatgtataaatgaaAAAGATATATGTGTATAGGTTTAAAATCCTGTGCCACAAAATAATATCATGTAtgtgaaaatttattttaaatgtcattgaGGCCCTACCTcagatttttgtatttatgtataaaaatgcgACTATAGTATCTTTGccaataatgtaataaaaaccaGAGTAATCAGAAAATGTATAAGCTCCAAACTGAGAAATAAATGTCAATGTTTTCAACTTCAAAA

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05038 SLC6A5_9, GLYT; solute carrier family 6 (neurotransmitter transporter, glycine) member 5/9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222258 lncRNA upstream 110217 25345291 ~ 25345491 (+) True G187782
TU222140 lncRNA upstream 164734 25290513 ~ 25290974 (+) True G187675
TU222133 lncRNA upstream 183109 25272276 ~ 25272599 (+) True G187668
TU222076 lncRNA upstream 279619 25175808 ~ 25176089 (+) True G187612
TU222026 lncRNA upstream 333593 25121247 ~ 25122115 (+) True G187563
TU222386 lncRNA downstream 262300 25747110 ~ 25750632 (+) True G187895
TU222471 lncRNA downstream 433741 25918551 ~ 25919605 (+) True G187961
TU222482 lncRNA downstream 457082 25941892 ~ 25949972 (+) True G187970
TU222672 lncRNA downstream 503988 25988798 ~ 25993403 (+) True G188127
TU222720 lncRNA downstream 624813 26109623 ~ 26109848 (+) True G188168
XM_026910021.2 mRNA upstream 6947 25387312 ~ 25448761 (+) True prmt3
XM_026910022.2 mRNA upstream 24987 25387312 ~ 25430721 (+) False prmt3
XM_034308697.1 mRNA upstream 72708 25357983 ~ 25383000 (+) False htatip2
XM_026910002.2 mRNA upstream 72708 25375560 ~ 25383000 (+) False htatip2
XM_034308698.1 mRNA upstream 72708 25375782 ~ 25383000 (+) False htatip2
XM_034308508.1 mRNA downstream 46944 25531754 ~ 25696872 (+) True LOC113523924
XM_034308509.1 mRNA downstream 46944 25531754 ~ 25696872 (+) False LOC113523924
XM_026909993.2 mRNA downstream 439370 25924180 ~ 25930589 (+) True tollip
XM_034308780.1 mRNA downstream 554576 26039386 ~ 26062656 (+) True LOC113523928
XM_034308692.1 mRNA downstream 598847 26083657 ~ 26095138 (+) True slc38a7
TU221326 other upstream 1244983 24207893 ~ 24210725 (+) True glrx2
TU221328 other upstream 1244983 24207893 ~ 24210725 (+) False glrx2
trnaq-uug_6 other upstream 1508645 23946992 ~ 23947063 (+) True trnaq-uug_6
trnaq-uug_5 other upstream 1516820 23938817 ~ 23938888 (+) True trnaq-uug_5
trnaq-cug_12 other upstream 1517328 23938309 ~ 23938380 (+) True trnaq-cug_12
trnar-acg_9 other downstream 21613 25506423 ~ 25506495 (+) True trnar-acg_9
TU222375 other downstream 46935 25531745 ~ 25593503 (+) False LOC113523924
TU222713 other downstream 701052 26185862 ~ 26212109 (+) False polr2l
TU222716 other downstream 722132 26206942 ~ 26210010 (+) True G188164
TU222712 other downstream 725749 26210559 ~ 26212109 (+) False polr2l

Expression Profile