RNA id: XM_026912456.2


Basic Information

Item Value
RNA id XM_026912456.2
length 1790
RNA type mRNA
GC content 0.46
exon number 9
gene id elovl1b
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20932742 ~ 20947791 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTCgcctcctctctcttctcaccGCCCTCTTTTTCCTGTAACTAAAGGGTGGAAGGGTTGGGTCACATCTTCCGACTTCATCAAAGGGGCTAAAACGGAGTGAATTCCATCCTCAGTGATCTCCAAAAGCACTCCCTGTAACTGTTCAGGCCGTGTTTTACTTCTGAACTGGGAGAGCAATAACTTGACGGGGAACAGAGTTTTGGCCCACCGGcactcagcagcagcagccaccTCTGAAGAAGAAGTTTAAGTTTAAGaTTTTGCACTAGCCCAAAGCACTTCAGAAGTTGGTGAAAATGCTGGAGACGGTCAGAGACAGAGTGCTGGAAGTGTATGACAAAGTCTTAGCGGGGAGAGACCCACGGCTGAGGGGCTACCCGCTGATGGACAGTCCGGTCAACATGACGGCGGTTCTGCTCGGCTATGTCTTCTTCGTACTGTACGCAGGCCCTCGAATAATGGCCAACCGCAAACCCTTCGAGCTGAAAGGGCCTATGATTTTCTACAACTTTTGCTTGGTTTTTCTGTCTAGCTTCATTGTATTTGAGTTCTTGATGTCAGGATGGGCTACAGGATATACGTGGAGATGTGACCCATGCGATTACTCCGACAGCCCGCAAGGACTTAGGATGGTCAGAGTGGCCTGGTTGTTCCTCTTCTCAAAGTTCATTGAACTCTTAGATACGGTGTTTTTTGTTCTACGTAAAAAACACAGTCAGATTACCTTCCTCCACATCTTCCACCATTCTTTCATGCCCTGGACTTGGTGGTGGGGAGTCAGCTATGCTCCTGGTGGAATGGGCTCATTTCATGCCATGGTCAACTCAGTCGTCCATGTGATCATGTACTTCTACTATGGCCTCTCTGCTGCAGGACCTCGCTTCCAGAAGTACCTCTGGTGGAAGAAATACATGACAGCCATCCAGCTGGTGCAGTTTGTGCTGGTGTCCCTTCACGCTACACAGTATTACTTCATGTCCAGCTGTGATTACCAGGTACCTGTGATCATCCACCTCATCTGGATGTATGGCaccttcttcttcatcctcttctCCAACTTCTGGTACCAGGCCTACGTGAAAGGCAAGAGGCTGCCCAAGAGTACCGAACAGCCGAGTCAGAAAGGCAAGGCCGGTGCTGTTCTTTCCAACGGAGCCACATCCTTTGCTAACGGAGCCTCACTTATGGCTAACGGCAACGGTGTACATCACGAGAATGGCGTGGCCAACGGGAAGAAGCACTATGAGAACGGAAATACTCACAACGGTAAGATGAAGAAAGCCTAACGGGCCGAGAGAAGAACATCCAAAACGTATGACCACGAGTGCCTGCATTAAAACGCCATGGATTCCAAAGAGTGTTTTGGGACTGTTTTTCCCTCATCCTGGTTTTGTTTATTCCctttattttgtagttttaaGATGCACAAATACATGGGGAAATGAATGAGTCTGGGATccctgtttgtattttttttgttattaattttaattgttaatctatagaaaataaataatgagcaCAATATATGAAGAGAAGAGATAATTTAATGACTGGCTGTGTTCTTCACTGATGGTGCTCACCTTGTCATGAGTGAATGCACTCCTCCTTTCCTTACTCCCCAGTGACCAACAGCACTGTACATTTCTCTTAAGACAACTTGAGCTCCAGCTGTAAATACTGTAGGTTTACTGTCAGAACTAATGGGATTGATAGGGCTCTAAATTTTTGTTACTGAAGTATATTGACTTGAAGATATcaaaataaattccattttaaaatggtg

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219346 lncRNA upstream 36281 20890247 ~ 20896461 (+) True G185330
TU219189 lncRNA upstream 224715 20705994 ~ 20708027 (+) True G185206
TU219165 lncRNA upstream 364450 20568076 ~ 20568292 (+) True G185182
TU219046 lncRNA upstream 377618 20554856 ~ 20555124 (+) True G185092
TU219010 lncRNA upstream 426062 20506477 ~ 20506680 (+) True G185063
TU219404 lncRNA downstream 16744 20964535 ~ 20967901 (+) True G185381
TU219446 lncRNA downstream 55037 21002828 ~ 21024560 (+) True G185418
TU219472 lncRNA downstream 111273 21059064 ~ 21060228 (+) True G185436
TU219486 lncRNA downstream 129384 21077175 ~ 21084699 (+) False G185439
TU219480 lncRNA downstream 130881 21078672 ~ 21084699 (+) False G185439
XM_026920038.2 mRNA upstream 45398 20881535 ~ 20887344 (+) True LOC113530200
XM_026920046.2 mRNA upstream 45398 20882591 ~ 20887344 (+) False LOC113530200
XM_034308490.1 mRNA upstream 93153 20806331 ~ 20839589 (+) False mast3b
XM_026920807.2 mRNA downstream 20944 20968735 ~ 20989421 (+) True chrna4b
XM_026920815.2 mRNA downstream 35241 20983032 ~ 20989421 (+) False chrna4b
XM_026927592.2 mRNA downstream 81603 21029394 ~ 21036574 (+) False hcn5
XM_026927583.2 mRNA downstream 82467 21030258 ~ 21036574 (+) True hcn5
XM_026915666.2 mRNA downstream 95509 21043300 ~ 21050473 (+) False txlng
TU218923 other upstream 781848 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 1061279 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 1098328 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1232468 19695244 ~ 19700274 (+) True rps15
TU218486 other upstream 1379220 19550382 ~ 19553522 (+) False si:ch73-40i7.5
XR_004579103.1 other downstream 241995 21189786 ~ 21210539 (+) False wipf2a
trnap-agg_1 other downstream 1011097 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 2985075 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 2986341 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 2986844 23934635 ~ 23934706 (+) True trnaq-uug_3

Expression Profile