RNA id: XM_026912503.2


Basic Information

Item Value
RNA id XM_026912503.2
length 3367
RNA type mRNA
GC content 0.49
exon number 17
gene id tdrd5
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 15132007 ~ 15148372 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAATCGTCCGCTTGAGAAGCCCAAATTCTGGCGTTAGCTAGCTACTCCTGTCCGGTTGTGTTGTAATGGGAATTTATGTAGAACAAAACTGACTTGTTTTGCTAGCCGGTTAATTGTagagtatttctttttttatatatatgtagttttaGCACATATAACCGTGTGCAAACTAGCAGTAGTGCCTGACGCTAATAACTCAGTGAATTCACTTGGCTAGTTCCAGTAGCTCCCTTCAAACAGATGATAGCCATGCCAGTGTGAGGTGTGATTATGGATCCTGAGCAGCTTCTTTCAAGTGTGAAGAAGGATGTCCGCTCTCTACTCATCTCCTCCAAGCAGGGCCTTTCTCCAGAGCAGCTCAGGAAGGACTACCAGAACATGCTGGGCCACCCCTTGCCCCTCAAGGGCCTTGGCTTCCGCTCTGTTTTGGACATGGTCAAGGAAATGCCTGATGCCGTGCGCTTGGACTATGCCCTCGATGGCACTTTAGTGTTAAAAGCAATTGGGGATGAGACCACGAGAGGCATCGAAGAGCTCGTCTTGAGACAGCGGAACCACAAGCACAAGCCCAAGTCAAAAAGTGGCAGCACGGGTTTGTTCTCATCACGTTCCCTTCATCACCAGCACTCATTTGTCCTCCCTCGTAGAGGCCATGCTCCCCCTGCTCTCCCTGCTCAGCTGCGCTCACAGCTCCGGCAGTTACTCACCCATGGCCCCATAGGGCTTTCTGAGCTGGAGAGGTGCTATGCAGTCCGCTTCGGCAGGCCTCTCTATGTGATGCACTACGGCTTCTACTCCATCGCTGAGATGCTGGCTGCTGCCTCAGACATGATCGCAGTGAGGCAGACTCGCGTGGGGTCACAGTTGATACTAAAGACTGAAATCACACCAGTCAAACAGATGCTCAATAGTACTGCTGCTCTCCCTAAACAGTCTGCAGGAATATCCAGAGTGTCCCCTAGCTCAGTACTGCGAAAAACAGCAGTGCCCAGCAACATCCAGCCTGAAGCCCAGCAGAACCCCAAAGAAGAAGCCATCAGAGTACAGGAGATTGAACCTGTCACTCTTGTAATGCAAGAAAAGTCATTTGAGAAGTCTGTTGCAAagCTTGAGGAGGAGTTCAGGAAGAGGATTATTGAAAGTGGAGACGCAGGCACCGTCAGTCAGGAACTGAAGGAGAAGCTTCGAAAGGTTGTTGCTGAGCACAGTCAAGGCATGGCCATTCACAATCTTCCTACAGAGTACAAGAAAATGTATGGTGAGGACTTGCCCCTGGTCCAGTGTGGCTTCCTGAGTGTGACTGAGATGGTTGGAGCCCTCAGCGACACGTTCTATGTGCAGCCAAGCACTGAAGAAGGAGCAAAGCACTTACTCATCATGGAGCTCAAAGCAAATGATCAGCCAGCCTTGTCTCTGAACCCTTCCACTGAGGGACACTACTTCAGCTGCAGTGAGACAGCCTGGGAGTGTCAGGGTGATGGACGAGAGTCCATGGAGTCTTTAGAGTCCAGCCCTGAGATCGAAATCACCAACAAGGTCATCCATCAGacGGTGGACATTTTCCCAGTGACGGTTCTCAGCCCTGGCTCCACGGTTCCTCTAGATGCACTGCGATGCCAGAAGCTGAAACCTCCCACTCGTAGAAGAGACAGGGAGCTGGTGCCTGTTGTGGTGGAGAGGATCGAGTCACCCAGCCACTTTTACATCCGCTTTGATGAAGACCAAGAGGCCCGCACCCTAGAGAACATGATGCTTGAAATgagGAGCTGTTATTCCTGCCCAGAGCTGGCTGAACGCTACCGGCTCCCAGATGCATATGTGCGACCTGGACAGGTGTGCTGTGTGGCCCCAGGAGACATGTGGTTCTACCGGGTGGTGATCCACCGGGTTCTCAGTGCCACAGAGGTGGAAGTGTACTACGTGGACTTTGGAGACCTTACAGTTGTCAGCAGAAACAGGCTGCAATTCCTGAAGTCATGCTATGCTGAGCTTCCAGCACAAGCTGTTCCATCTGTACTTGTTGGCGTGAAGCCAGTTAAGGGTATTTGGTCTCAAGAAGCCACCAGCTTGTTCCAGAAGCTGTGCTATGACCGCACCCTGGTGGCTGCTGTTCACAGCTACCAGTACGACTTCCTGCTGCTTTTCCTGTGTGACACTCACACTGAGGAGGACCTCTACATCCATAGTGCACTTCAGGCCGGGGGTCATGCTGTAGCCTGCACTGCCGCTAACACGCTGGTATTACCTCAGTTCAGCCCTGTGACTCTTTACCTCGGTGACGGCCAGCTGGAGGAAGTAAAGGAACATTTTGCAGCAGAGACGACTTCTCTTAGTGTCACAAATGGGCAAAACCTTACACAACAGCTTCAGCCAGATGCCTCCACAGTACGCAGTCAGCTTTTGACAGATGGTGTAGAGAATCACCAGCATAGCCAAGAAATGGCTCTTCTGGATCTTCCTGAACTGGAATTCATTGATGTGGCTCAGGGTGAAAATTCTAACCCATTTGAGGCACTGCTGAATAAAGATCCAGCAAGCTTTGGTAGCTGGGATCAGGGATGGACGAACAAGGCCAGTGTAGATAAGGAGTCCAAACCTCTCCAGAATGGTCAAGAGGAGAGTGCAAATACTGCATTGCTGTCACCTGTTCCATCTATCAAACCGGACACAGAATCACAGCCAGTTTTGGAgagtaaacacactcagaaaccTGCATCAACACTGCACGTGATCAGTGATCAAACTCCAGGCCTGATCAGCAGTTGGAGCCACCACACAGaCATGTCTGCTGAATTGTTCCAACCTCTGCCCTCCAGTCTGATGTTTTCTATGTTCAGCTCTGGAGACAGGCtggctcaggatgctctctttCTTCGCCACATGTCCCCTCTCGCGCTGGGCCCCTCAGCCCGCATGGCAGCCGGACCCAGCCTCCTCCAATGgtacacaaacaaacaggttTAAACAAACCGACTGCCCCTACTGGTGTCTGCATATGCTGACCTGAACCAGCTACAGATGATTGTTGAGAGCTATGCTGAGTTATGCAGATGTAGTTCTGAAAGTTTTCAGTGTTTGTATTATGTTGAATgtagttttacatttttcttttatatgttATTTGCAACATTTAAAAGCACACCCAGATTGTAACAAACAAATTATGAAACAATATTGAGAGAGAAATGGAATATTGTTTGTGATTGATAAATTGTTTTAAACTAATGGTGTGTCTCACATATtgatttgttattaatattattcttGTTTTATCAGGTAAAATTCTGAATTGAGGTTTTTGGTTTTTCAACCTAcccattttatctgttttttctgttttaagtaAAGTTGCATGTTCATTGTA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0007281 germ cell development biological_process
GO:0007283 spermatogenesis biological_process
GO:0035770 ribonucleoprotein granule cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component

KEGG:

id description
K18407 TDRD5; tudor domain-containing protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214970 lncRNA upstream 45967 15085901 ~ 15086320 (+) True G181632
XR_003403448.2 lncRNA upstream 130054 14994688 ~ 15002233 (+) True LOC113533733
XR_004579076.1 lncRNA upstream 130054 14994688 ~ 15002233 (+) False LOC113533733
TU214923 lncRNA upstream 154736 14960885 ~ 14977551 (+) True G181599
TU214912 lncRNA upstream 201425 14867927 ~ 14930862 (+) True G181588
TU215238 lncRNA downstream 144866 15293238 ~ 15294067 (+) True G181851
TU215210 lncRNA downstream 150876 15299248 ~ 15308946 (+) False G181824
TU215211 lncRNA downstream 155964 15304336 ~ 15308946 (+) True G181824
TU215365 lncRNA downstream 224386 15372758 ~ 15372970 (+) True G181944
TU215366 lncRNA downstream 224848 15373220 ~ 15383177 (+) True G181945
XM_026913059.2 mRNA upstream 6163 15115050 ~ 15126124 (+) True axdnd1
XM_026923150.2 mRNA upstream 17924 15099315 ~ 15114363 (+) True nrd1b
XM_026927363.2 mRNA upstream 35900 15088240 ~ 15096387 (+) True rab3b
XM_034308424.1 mRNA upstream 46905 15080920 ~ 15085382 (+) True atpaf1
XM_034309002.1 mRNA upstream 52520 15050672 ~ 15079767 (+) False frem1b
XM_026925560.2 mRNA downstream 2649 15151021 ~ 15165898 (+) True fam163a
XM_026919028.2 mRNA downstream 22189 15170561 ~ 15285798 (+) False rabgap1l
XM_026919036.2 mRNA downstream 22189 15170561 ~ 15285798 (+) False rabgap1l
XM_026919044.2 mRNA downstream 22189 15170561 ~ 15285798 (+) False rabgap1l
XM_034308431.1 mRNA downstream 22189 15170561 ~ 15285798 (+) False rabgap1l
XR_004579090.1 other upstream 420560 14708927 ~ 14711727 (+) False pdzk1ip1
XR_004579085.1 other upstream 485465 14622543 ~ 14646822 (+) True si:dkey-121a11.3
TU214729 other upstream 537672 14589919 ~ 14594615 (+) False ankrd29
TU214656 other upstream 569321 14561690 ~ 14562966 (+) False LOC113540185
TU214440 other upstream 958069 14165026 ~ 14174218 (+) True G181175
TU215983 other downstream 1106691 16255063 ~ 16255852 (+) False LOC113532318
XR_003403746.1 other downstream 1431864 16580236 ~ 16580303 (+) True LOC113537281
TU216336 other downstream 1434931 16583303 ~ 16584943 (+) True G182819
TU216450 other downstream 1764886 16913258 ~ 16922922 (+) True G182877
trnak-cuu_26 other downstream 1881500 17029872 ~ 17029944 (+) True trnak-cuu_26

Expression Profile