RNA id: XM_026912525.2


Basic Information

Item Value
RNA id XM_026912525.2
length 2100
RNA type mRNA
GC content 0.52
exon number 12
gene id cdc6
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21200218 ~ 21206239 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGAAAACGCGCCAGCTGATTGGTGAAGTGTTGCTCAGAGTGGAGAAGCGCGCCAGTTGTTTCTGTCAGCGGTGAGACGAGGAGCTTGTCTGGACGGTTTTTGTGActggaaacaaaaagaaacgTTTTATCCCGATATTAGCTACAGCCTGGTCTGGTGAAAATGCCCACCACTCGCTCTCAGAGACAGCCAACTCTCCAGTTCCCCAAGCGCAAGTCCTCCAGAGTCTCTTCCCAAGCCAAAAGTTCTTCATCTCAGCCCGACTCGGAGCATGTTCTGGACGCTCGAACCATCCCCCTGTCTCCCAGAAAGACAAACTTGGGTGTCAGAAACGTCCCACTTTCTCCCATGAAGGCAGTTGTGGACGTCCGAAACGTCCCTCTTTCTCCCAGAAAGACAAATGGTGCAGACATCAGGGCCATTCCTCTGTCCCCCCGACACCACATGCTCCAAAGTGTCCCTTCTTCTGAGAGACTTCCTCTGAGCCCCAGAAAGCGCACAGGCGACGAGAACGGATGCAACCTGCCGCCGTCTCTTCAGGGCTCTCCTCCCAAACAGAGCCGTCCCTCACTAGGCTCCCCTCGCAAGCTGTCCTTTAATGAGAACATTCCTGTCTTCGCGTCGCCTCCTCGGCCTACCTCAGCAGACTTTAAAATCCCTATTTCATCCTCGACTTGCCCTTCTCCCAAATGCTTGAAAGAGCCCACTAGAGCTGAATCTGATGCACTGGAGAAGGTGTCCGCTCCTGTTGGAAAAAAATCACAGTACCAGTGCGTGAAACAGGCTCTTCACACAGCTGTGCCTGAGCGACTGCTctcaagagagacagagcgaggcGTTATTGTTTCCTTCCTGGAGAAACACGTGGTGCCCGGCAAGCCGTCCAGCCTGTACATCTCTGGAGCTCCTGGAACAGGGAAGACGGCCTGCTTGAACTGCGTGCTTCAAGAACGCAAGGCTTTCCTAAAAGGAGTACAGACAGTGGTGATTAACTGCATGACACTGCGTAGCTCCCATTCAATCTTCCCTGTTCTAGCGGAAAAACTGGGAACGTCCAGAGGCCACAGCGATGGCAAGCTTGAGAAACTGCTGACCAGTTCAGGCCCCACTGTTCTGTTGGTACTGGATGAGATGGATCAGCTGGACAGCAAGGCCCAAGATGTTCTCTATACCATCTTTGAATGGCCTTATCTTCCTAACTCTCGGCTGTGTCTCATTGGTATCGCAAACGCTCTCGACCTGACGGACCGTATTTTGCCCAGACTGCAGGCTAAGCCTCACTGCAGACCACAGCTTCTTCACTTCCCACCCTACAGCCGCCAGGAGCTGGCAGCCATCGTCCAGGACCGGCTCACACAGGTCTCAGAAGAAGGTGTTCttgatgctgctgctgttcaGTTTTGTGCCAGAAAGGTGTCTGCAGTGTCAGGAGATGCCCGAAAAGCTCTAGACATCTGCAGGAGAGCTGTAGAGATGGTTGAGTCTAACAACAGATCCAAAATGTCTTCTGAATCGACAAACACCACTACAAATGCTAATACTAAAGcGGCACGTGTGAGTGTTCCTCAGGTGGCGCGGGTGCTGTCGGAGGTGTATGGAGACCGCATGGCCTCTAGTGGGGGGGAGGAAGGAGAAAGTTTCCCTCTGCAGCAGAAATTGCTGGTCTGCTGCCTGCTCCTTCTTACGCGCAATGGCAAGAGTCGAGAGATCCAGCTGGGCAAGCTGTGTGAGACCTACAGTAAACTGTGCCAGCAGAGGCAGGTCAGTGGCGTGGGCCAAGGCGAGTGTCTGTCACTATGCAGTTTACTAGAAAGCAGAGGCATCTTCTCTCTCAAGAAGGCCAAAGAAGCACGACTCACCAAGatcTCTCTGAAGATTGAGGAGAAGGATGTGGAGAATGCGCTGAAGGATCGTGCATTACTGGGCAGCATCTTGGCTGCAGGTCTGCCGTGATCTCCATCAGTACAGCCTCCTGCATCCACCTTGAGACCTTCACTTTCCacaatgatatttatttttgtaatgtgtttattttgcaaCTTTTCAAGCGGTGAACGTCTTGTCTTCAGCAGGACAGCTTCatgacaggcttttttttt

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K02213 CDC6; cell division control protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219486 lncRNA upstream 115519 21077175 ~ 21084699 (+) False G185439
TU219480 lncRNA upstream 115519 21078672 ~ 21084699 (+) False G185439
TU219481 lncRNA upstream 115519 21078672 ~ 21084699 (+) False G185439
TU219491 lncRNA upstream 115519 21078672 ~ 21084699 (+) False G185439
TU219472 lncRNA upstream 139990 21059064 ~ 21060228 (+) True G185436
XR_003402980.2 lncRNA downstream 31065 21237304 ~ 21248130 (+) True LOC113528706
TU219537 lncRNA downstream 55336 21261575 ~ 21262176 (+) False si:dkey-28e7.3
TU219490 lncRNA downstream 121015 21327254 ~ 21339714 (+) False G185439
TU219483 lncRNA downstream 121198 21327437 ~ 21339714 (+) False G185439
TU219484 lncRNA downstream 121198 21327437 ~ 21339714 (+) False G185439
XM_034308923.1 mRNA upstream 1743 21189248 ~ 21198475 (+) False wipf2a
XM_026930296.2 mRNA upstream 1744 21189786 ~ 21198474 (+) True wipf2a
XM_026928883.2 mRNA upstream 13154 21174029 ~ 21187064 (+) True si:ch211-69b7.6
XM_026928890.2 mRNA upstream 13154 21174029 ~ 21187064 (+) False si:ch211-69b7.6
XM_034308757.1 mRNA upstream 26874 21156418 ~ 21173344 (+) True abcc10
XM_026917326.2 mRNA downstream 45906 21252145 ~ 21265055 (+) True si:dkey-28e7.3
XM_026936635.2 mRNA downstream 64220 21270459 ~ 21277952 (+) True krt99
XM_026921674.2 mRNA downstream 84195 21290434 ~ 21292917 (+) True krt15
XM_026916820.2 mRNA downstream 114852 21321091 ~ 21324269 (+) True krt94
XM_026935643.2 mRNA downstream 133704 21339943 ~ 21344414 (+) True c11h6orf120
TU218923 other upstream 1049324 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 1328755 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 1365804 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1499944 19695244 ~ 19700274 (+) True rps15
TU218486 other upstream 1646696 19550382 ~ 19553522 (+) False si:ch73-40i7.5
trnap-agg_1 other downstream 752649 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 2726627 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 2727893 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 2728396 23934635 ~ 23934706 (+) True trnaq-uug_3
trnaq-uug_4 other downstream 2730778 23937017 ~ 23937088 (+) True trnaq-uug_4

Expression Profile