RNA id: XM_026912605.2


Basic Information

Item Value
RNA id XM_026912605.2
length 2533
RNA type mRNA
GC content 0.45
exon number 10
gene id mef2b
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 15675692 ~ 15692110 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGATAGCGCGTGTGTACGGGTTCGGAGCTCGTGATTACGACgtggtgtgtgttcaagtggttTGGGCCTTAAAAAGTGGACGGCACAAAAGAGTGCATCAGAGTGAAATGAAGTGGTGCATGAGTGAAGTCACTTTCAACCAATGGTGTGGTCAGTGGGCGGAGCTATGCTAATTACTTTTAAAGCAGATGCTAGTGTATGAACAGCTGGAGGATGAAGTGTACAGTAGTAAAGCACAGAGCTGAAGacacagagctgctgattgTCCTCTACTGTTCAACATATCAGCATCAGAACCGTTCTCTGGAAAAGAACATCATGGggagaaagaaaatacagaTCTCACGGATTCTTGACCAACGAAACCGCCAGGTGACGTTCACCAAGCGTAAGTTTGGCCTAATGAAAAAGGCCTACGAGCTGAGTGTGCTGTGTGACTGTGAAATTGCTCTCATCATCTTCAATAGCACCAATCGTCTCTTCCAGTACGCCAGCACTGACATGGACAAAGTGCTCCTCAAATACACTGAGTACAGCGAGCCTCACGAGAGCCGCACCAACACTGACATTCTGGAGACCTTACGTAGGAAAGGGCTGGGCCTGGAGGGAGCTGAGCTTGATCATGAGGACAGCATGCAGACAGGCCAGGAGAAATATCTGCTGAATGAGGGCATGGATCTCTCCATCTCCAGGCAACGTTACTATGCTCCCTCTATCCTTCCTTCAGAGGCTCAGATGCTAATGGGTGTTGGCTGTGAGAATGGTTACCCATCGAACGCGAATCTGGGAGCAAACAGACCTTCATCCTTCAAACCTCTGAGCTCTAGGCCTGGATCTGCCGGTCCTCCCGGAGCCAACACACACTCCGCACTCATGGGCGCACACACAGGCTTCGGCTACTCAGTGTTTTCCCATGGCAACCTGAGCAGAGCACTGGATATGAAGACTCCGCCTCCACTGAGTTTGACCAATGATGGACGGCGTGGGGAGGTCCAAGCGGGAGTGGGTGTAGCCCGCGGCAATCTGACCAACGCGAGAGCGCTGTATCAGAGCATGCACTCTGGAGGCCACATGATGGCCATGGGGAAACCCTGGAATTATGGGACTTCAGAGTTTTGCCACCCAGGATACGCAGTGGGGTTTCAGCGCAGCTCTGCAAACACCTGGCAGCCTCTCACACAGCAGGAGCCGCAGCCATCTGTGATCCACACAGGGATGTCCACAGGTGGAGGCTGTTCTTACTCTTCCCAAGGCTCCTCCCCCTCTTCTCCACCTCTCTCCTCCCTCAACCTGAACATCAAATCAGAGCGTGCCTCTCCTGAACACACGCTCTCCCCGGCCACACCTTCTTCCCATCATTCACCAGTGGGTGGTCCTGATGGGATGAGCCGGCCACCTCCCGGGCCGTACGTGGACACGGACAGGGAGGAGAGTGAGCCAGTTTGAAGCACATGGAGGTCGGTGATGGCTGGCAGAGATAACggcaaacacacagcactgtgtaaACAGCTGGTCTTTTATTATTTGGAATGTCAAACTGTGCAAAACCAGCTATGATGAGAAAAATACATGTATAGTACATTGTTAACGTAACAGTGTTTCCAGTTTCCATTCGGAAAGGCAACTTGAACCTGATTGTTCCAAACATGTTGTCTTTTGATATGAAAAATTGATCAAGACCAGGTATGGACCAATCTGTTCACTGGTTTATAAGAAATTACTGTAAAGTGGTGAGAGTTGCTTCATAACAGAGCCCTAAAATATTACagcattacattaaatgttCTCAGTAGCCAtcgtgttgtttttttttttttttcatccatttctgATTGAGGCTTTGAATAATTTGGAAAGGACGTCCCAGACTTTCTAAAGCCACTCTCGCCTGATATACCAAAAACTGTCAGGGACGcctgtaaacatttttttaatcaatctgTACTGCAGCTTATGTACTGCAGCATGTTATATAACATTTAGTTGGTTTTTGGTTGAgtttatgtttcttttattgGATGGccaagaaaatgttaaaaatcatttgaaatatGACATCCATTACACACCGGGATCTACACAACATTATGATAAAATACAGGGCACAACGTTACATGACTGTAGTCCAGAAATGTCTCTTAAATCTATTTTCATataagtttttaaaaagcactgtACATATGTTTTGCAAAAATTGACATAAATGTACCGAAATTCAATATCCAGCTGTTTTATAACTGCATTGACCAAggctattttattttcttttatcatGAAATTCTGTTTCTACTGTTTTGAGAAGTTATACTTTGCATAATAATAGtagttataatatttttttcccttattgcTCATCTTGTACCATTTATATggatttacagtatatatggAGCTGTTTCTGTCTATGAAAGCTTAAGGACCAGAATTTTCTTCCACTGTTCAGGCTGTTCACTGTATTTTCCACAAGAGGGAAGCACATATCAGTCACTGAGCATGTGGCTCAGCTTTTAACTCACGTCCTAGTGTGGACTGT

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005488 binding molecular_function

KEGG:

id description
K09261 MEF2B; MADS-box transcription enhancer factor 2B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215565 lncRNA upstream 1710 15668828 ~ 15673982 (+) True borcs8
TU215564 lncRNA upstream 2266 15668828 ~ 15673426 (+) False borcs8
TU215447 lncRNA upstream 159737 15515741 ~ 15515955 (+) True G182012
XR_004579124.1 lncRNA upstream 273567 15391070 ~ 15402125 (+) True LOC113534769
TU215366 lncRNA upstream 292515 15373220 ~ 15383177 (+) True G181945
XR_004579097.1 lncRNA downstream 21323 15713433 ~ 15755867 (+) False LOC113533795
XR_004579102.1 lncRNA downstream 22142 15714252 ~ 15755867 (+) False LOC113533795
XR_004579098.1 lncRNA downstream 26419 15718529 ~ 15755867 (+) False LOC113533795
TU215579 lncRNA downstream 30543 15722653 ~ 15744437 (+) True LOC113533795
XR_004579100.1 lncRNA downstream 30696 15722806 ~ 15755867 (+) False LOC113533795
XM_026912664.2 mRNA upstream 2247 15668798 ~ 15673445 (+) False borcs8
XM_026912680.2 mRNA upstream 2247 15668798 ~ 15673445 (+) False borcs8
XM_026912688.2 mRNA upstream 5485 15668798 ~ 15670207 (+) False borcs8
XM_026912651.2 mRNA upstream 9966 15662485 ~ 15665726 (+) True nr2c2ap
XM_026934668.2 mRNA upstream 147444 15521258 ~ 15528248 (+) True hapln4
XM_034308771.1 mRNA downstream 84576 15776686 ~ 15800617 (+) False gatad2ab
XM_026920973.2 mRNA downstream 84576 15776686 ~ 15800617 (+) False gatad2ab
XM_026920956.2 mRNA downstream 84577 15776687 ~ 15800617 (+) True gatad2ab
XM_034308770.1 mRNA downstream 85358 15777468 ~ 15800617 (+) False gatad2ab
XM_026946813.2 mRNA downstream 113176 15805286 ~ 15838980 (+) True yjefn3
XR_004579090.1 other upstream 963965 14708927 ~ 14711727 (+) False pdzk1ip1
XR_004579085.1 other upstream 1028870 14622543 ~ 14646822 (+) True si:dkey-121a11.3
TU214729 other upstream 1081077 14589919 ~ 14594615 (+) False ankrd29
TU214656 other upstream 1112726 14561690 ~ 14562966 (+) False LOC113540185
TU214440 other upstream 1501474 14165026 ~ 14174218 (+) True G181175
TU215983 other downstream 562953 16255063 ~ 16255852 (+) False LOC113532318
XR_003403746.1 other downstream 888126 16580236 ~ 16580303 (+) True LOC113537281
TU216336 other downstream 891193 16583303 ~ 16584943 (+) True G182819
TU216450 other downstream 1221148 16913258 ~ 16922922 (+) True G182877
trnak-cuu_26 other downstream 1337762 17029872 ~ 17029944 (+) True trnak-cuu_26

Expression Profile