RNA id: XM_026912651.2


Basic Information

Item Value
RNA id XM_026912651.2
length 830
RNA type mRNA
GC content 0.40
exon number 5
gene id nr2c2ap
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 15662485 ~ 15665726 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCGGCAGTTGGGAGTTCATGACTTCAACATGGCTGTATCTCTGATATGTAGTAACACACTGAGCAGGGTTAGCTCCGTTTTAAACAGAGATGTCAAGCAGTTTGGTAAGAAGTTCATGTTTGATTGCAGTGAGGAGACCTGCTGGAATTCTGACCAGGGAGAGTGTCAGTGGGTGCTCCTGGAGTTTCCTGTGCCTGTCAGCATGTCTGAGCTCAAACTGCAGTTCCAGGGAGGATTTTCAGGAAAATCTTGCAAGTTAGAAGGCTGCATTAAAGATGGGAATCTGGAACACATTATGGACTTCTATCCAGAAGACAACAATGCTTTGCAAAGCTTTCCCATTCAAAATGCCCCACTGGTGCAGAAGCTTAAAATAGTATTTGAAAACAGTACGGACTTTTTTGGAAGAATAATAGTTTACTCTTTGGATGTCCTGGGAGAACGAGCTTCTTGATGTTTGGAAAAGAGAACACGTGAGAGAACCAGACTgcaaaaaacagcaaacaggcAACAGCTCGCTGTGATGGACAGATCACCTGACTCTCCTTACACTCTTTCATTCAGCACAGAtggactgtgttttttttttttttctttggtattAATTTCATACATCGGGGATCAAGTGTATTTATCTGCTCACcaataagtaattttttttttttaataaatggctTTGactaacaggtttatattgacATTTTATTACAAAGGTACACAAAGCGTTGCGTTCAAAAAGAAAATTGTGATTCTTAAATGTAGTCATGTATGATCATCGAAGCAGGTGCAGTATGTGATCCTCAAGCAGCTTTTGCACtgaaaaggatt

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215447 lncRNA upstream 146530 15515741 ~ 15515955 (+) True G182012
XR_004579124.1 lncRNA upstream 260360 15391070 ~ 15402125 (+) True LOC113534769
TU215366 lncRNA upstream 279308 15373220 ~ 15383177 (+) True G181945
TU215367 lncRNA upstream 285258 15376076 ~ 15377227 (+) True G181946
TU215365 lncRNA upstream 289515 15372758 ~ 15372970 (+) True G181944
TU215564 lncRNA downstream 3102 15668828 ~ 15673426 (+) False borcs8
TU215565 lncRNA downstream 3102 15668828 ~ 15673982 (+) True borcs8
XR_004579097.1 lncRNA downstream 47707 15713433 ~ 15755867 (+) False LOC113533795
XR_004579102.1 lncRNA downstream 48526 15714252 ~ 15755867 (+) False LOC113533795
XR_004579098.1 lncRNA downstream 52803 15718529 ~ 15755867 (+) False LOC113533795
XM_026934668.2 mRNA upstream 134237 15521258 ~ 15528248 (+) True hapln4
XM_034308430.1 mRNA upstream 376687 15170861 ~ 15285798 (+) True rabgap1l
XM_026912664.2 mRNA downstream 3072 15668798 ~ 15673445 (+) False borcs8
XM_026912680.2 mRNA downstream 3072 15668798 ~ 15673445 (+) False borcs8
XM_026912688.2 mRNA downstream 3072 15668798 ~ 15670207 (+) False borcs8
XM_026912605.2 mRNA downstream 9966 15675692 ~ 15692110 (+) True mef2b
XM_034308771.1 mRNA downstream 110960 15776686 ~ 15800617 (+) False gatad2ab
XR_004579090.1 other upstream 950758 14708927 ~ 14711727 (+) False pdzk1ip1
XR_004579085.1 other upstream 1015663 14622543 ~ 14646822 (+) True si:dkey-121a11.3
TU214729 other upstream 1067870 14589919 ~ 14594615 (+) False ankrd29
TU214656 other upstream 1099519 14561690 ~ 14562966 (+) False LOC113540185
TU214440 other upstream 1488267 14165026 ~ 14174218 (+) True G181175
TU215983 other downstream 589337 16255063 ~ 16255852 (+) False LOC113532318
XR_003403746.1 other downstream 914510 16580236 ~ 16580303 (+) True LOC113537281
TU216336 other downstream 917577 16583303 ~ 16584943 (+) True G182819
TU216450 other downstream 1247532 16913258 ~ 16922922 (+) True G182877
trnak-cuu_26 other downstream 1364146 17029872 ~ 17029944 (+) True trnak-cuu_26

Expression Profile