RNA id: XM_034308530.1


Basic Information

Item Value
RNA id XM_034308530.1
length 3341
RNA type mRNA
GC content 0.48
exon number 25
gene id LOC113526144
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 23413029 ~ 23473569 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAATGCGTTAATGTTGATGagtttcttcttctcctctgctTCATGCTGATGagtttcttcttctcctctgcGGAGTTTCTTCTTCTGACGCGCTTTCCAAACTTCAGAGAAGAAGAACTTTAAGAGCAGGACATTTCTCCCCCTTGTTTGCTTTTCCCACAGGGAAACTCTGCTGAAAGGATGCACTTACTGAAACTTCTCTGCTCTAATGTCATTGTCTTGATTCAGCACTGCATTGGAAAagCTCTTGCCATTGATGTGGAAATCAAACGTTTATGGCCAAATGAGGAAGTTTATTATGAGTATCATCCAGCCAGGCTACACTGGCATGCAGTCAATCAGTTGTGTATTCAGCGGTCTGGATCCCTGGCGGTCATACGCAGTGCTGGAGAGAAACAAAACTTGACCAAATTTCTACAGTCCTTGAACATTTCAGAGTCTGTGTGGATTGCGAAAAGAGCTCCTGAAATAAAGGAGACCTTAATCCTGAAATTCCAGGACAGAAGTGAACTTCAATCCACTCGTTTGTTGCACAAGTTCTCAGACATGACTGCTGTGACTGTTTGTGCTCACCTTCAGTTCAATCCCACTTGCCATGGGCCTTCCGCTGTGTTTTCTTATTCCATACGCTCCTTCATTAAGGAGTTCCAGCTCCGAGCCAGAGTCTTGCCAAACGAACCCATTCAGCTTGCTCTGCTGGTGCACGGTAAACATGGCCCCTACCTATCGGTCTTCGCCAATGATGCCTCCtggcactctgtgtgtgtgagctggacTGGAAATGGTGGCAAGTGGGCAATTTCAGTGGATGGTCAGGAAGTTAGACGCGGTATTTCCCTCTACTCAACAGGCTACATCAGGGGCGGCGGCATTTTCATCATAGGCCAAGAACAAGACTCATTCGGCAGCTCCTTCAAAAGCGACGAGGCCTTCTGTGGCAGCATTACCCAGCTGCACATTTGGGATCAGGTGCTGGATGCCAGCAAAATCCAAACCATGGAAAAAGAGTGTTCAGTCATTCCTTCCGACCTGCTTTTCAGATGGGGCAGATCTGGCTTGGAAATGACACCTTCTCTACAGACTGACTGGGGCTACATCCAGTGTCAAGAGCATTCCCAGATGGCCAAGAATGAGAAGTGTGTATCATTTCACGCTGGCAGTGGAGAGTGGGCCTGGGACAACTGTGATACACAAAGAGGAGGTGTCTGTCAATTCGATAAAGAGCTCTTGGATGACTTTGGCATGTCCAATTTTCCCAAGACCCCATTTTTTACACAAATCAGCAAAAATCTTCATGCCAAACCTGAGTTAGAAGACCATAATTCATCTTCATCCACAGAACATGAATTGAATTGGCTGAGTTCACTTGCTCAGTCTGTTGTGAAGGCTATTGAGACTGATCCGGACATCATCACACCGTCTGACATGCTGCACCTCACTCAAACCATTGAGCAGGCAGCAGCTTCTCAAGTTAATAAAACATCTCTCCCTTCTGGAGTCCTTAGGTCCATGGCTTCCAGCTACCTGATCCTAGCCAGTGGACTCATTGATCCGGTCTTGGCCAGGCAGTGGTTGGATATGAAGCCATTAGGTATTAACCTTAGACCATTTATGGTTGTCGAGCTTATTGAAAAAATACTTTGGGCTCTGGCTGATTCAATCTTCACAGACAAGAAAAGCTTTGCACTTTTAACCAAAAACATCGATGTTCATATGGAGCCACGAACATTATCTCAAGTGAACTGCAAGAGTGTGTATAAACCCTCAAAACATGGTAATCAGTCCATCAACCAAGAGGATATCCTCATTTCAGAGACAGAGGTCCAGAGACTTTACTCCCTAGGTCACAAGAATGTGATGTTCATTCATACTTACTACAGCCACATGATGGAGGTGCTGTCCAGAGCTGaatttaaagcatttacagACAAGCACACAGAGAGTGGACAATCCGTTTTGGGTCACTTGGCTACAGCGGTCATATCAGCCACAGTGCGAGACGTGTTGAGGGAAGAGAATGTTCCAGTGTCTGTGCAGTATACTTTGTCTACTGTAAAAGTGGTGGAGTCTTCCAAGCTGGTCACACCTTTGTGTATTTTCTGGAATGTCAGTGCAGTAGCTCCCAATGTGAGTGATTGGTCAGACAAAGGCTGTAGCGTGTTGTACTCCGGACCGAATAGCACGTCCTGCTTTTGCAACCACACCACCAACTTTGCTATCCTTATGAATTACCTGGAGGCAAGGTGGAGTGAAGAGGAGGAGATGGTTCTGACCAAGCTGACATTTATAGGATCAGGAGCATCACTCTGTGCTCTCGTGGTGACCTTGATGCTGCTTACCGTGCTAGATATTCCAAAATCAGAGAGGACATCCATCCACAAGAATCTTTTCATCTCTCTGACCTTTGCCCAAATAGTCCTTCTCTGCAGTGGCTCTGCTATTCATAATAAGGTGGCCTGCACAATGGTGGCAGCTCTGCTCCATCTGTTCTTCATGGCAGCGTTTAGCTGGATGTTGGTGGAGGGGCTGCTGCTCTGGAGCAAGGTGGTGACCGTTAACCTGAGCGAGGATCGCCACATGAAATACTACTACCTGATTGGCTGGGGTCTGCCTGTCCTGATAGTCTCCATTACTCTGGCCTCGGCCTCAGGGAACTACGCAGCAGACGAGTACTGCTGGCTCAGTGTGCATAATGGCGTCATATGGGGGTTTGTTGGCCCAGTCATCTTTATCATTACGGTAAACATCATGGTGCTGACACGTGTGATTATCatcaccatctccacagccAAGAGGAGATCTCTGATGATGGCAGACAGCGCTAGTCCCATCGAACAGGCGTCTGAACAGATAAGGGCGGCGGTAAAAGCGGTGCTGGTTTTGCTGCCAATTTTAGGCCTGACCTGGCTGTGTGGAGTTCTCGTGCCTTTCTCCATCATCATAGCCTacatcttcatcctcctcaaCTCACTGCAGGGTCTCTTTATCTTCCTGATATATGGCGTGTACAACACAGAGaTACGCAGCACAGTCAACAGGATCAAGGAACGGAGAAAAGCCCAGAATTTTTCTAACTGTGGCAGCTCCAGACCATCCAGCTCCATAACTAACTCTCAGCCTGGCAGCTCCCCGGTGCCGGACGCTTTGGGTCGGCATGACTTCGCTGCCAGTCAGCCGGGAAGCCTCTCCACGTCCAGCGATTGTGGCAGCCTGAGCTACAGCATTGGGAGGCATTTCTCCATCCCTTGTGTCCATGACAGCCTGAAAGAAGATCTCAGCTGTCTCTCTAGTGGTACTCACATGACTACACAGgtgccattgtaagaAGAtaatctactac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220774 lncRNA upstream 60793 23335346 ~ 23352236 (+) True G186538
TU220644 lncRNA upstream 293252 23118760 ~ 23119777 (+) True G186435
TU220515 lncRNA upstream 407000 23003569 ~ 23006029 (+) True G186331
TU220483 lncRNA upstream 454643 22956296 ~ 22958386 (+) True G186304
TU220507 lncRNA upstream 458928 22953893 ~ 22954101 (+) True G186325
TU220984 lncRNA downstream 8914 23476115 ~ 23476497 (+) True G186699
TU221100 lncRNA downstream 201817 23669018 ~ 23676568 (+) True G186798
TU221099 lncRNA downstream 204783 23671984 ~ 23676568 (+) False G186798
TU221123 lncRNA downstream 244832 23712033 ~ 23714371 (+) True G186814
TU221181 lncRNA downstream 324719 23791920 ~ 23792127 (+) True G186864
XM_026921002.2 mRNA upstream 2915 23389070 ~ 23410114 (+) True kif14
XM_026921084.2 mRNA upstream 2915 23389070 ~ 23410114 (+) False kif14
XM_034308429.1 mRNA upstream 25353 23378681 ~ 23387676 (+) True ddx59
XM_034308916.1 mRNA upstream 242118 23169883 ~ 23170911 (+) True LOC117598438
XM_026943989.2 mRNA upstream 277877 23132967 ~ 23135152 (+) True fam43a
XM_034308759.1 mRNA downstream 368502 23835703 ~ 23926144 (+) True dennd1b
XM_026917310.2 mRNA downstream 511672 23978873 ~ 24003792 (+) True aspm
XM_026917314.2 mRNA downstream 511672 23978873 ~ 24003792 (+) False aspm
XM_026913018.2 mRNA downstream 650617 24117818 ~ 24138641 (+) True b3galt2
XM_026912863.2 mRNA downstream 650617 24117818 ~ 24138641 (+) False b3galt2
trnap-agg_1 other upstream 1454070 21958888 ~ 21958959 (+) True trnap-agg_1
XR_004579103.1 other upstream 2202490 21189786 ~ 21210539 (+) False wipf2a
TU218923 other upstream 3262135 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 3541566 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 3578615 19827986 ~ 19834414 (+) False tax1bp3
trnaq-uug_2 other downstream 465665 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 466931 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 467434 23934635 ~ 23934706 (+) True trnaq-uug_3
trnaq-uug_4 other downstream 469816 23937017 ~ 23937088 (+) True trnaq-uug_4
trnaq-cug_12 other downstream 471108 23938309 ~ 23938380 (+) True trnaq-cug_12

Expression Profile