RNA id: XM_034309004.1


Basic Information

Item Value
RNA id XM_034309004.1
length 5587
RNA type mRNA
GC content 0.49
exon number 30
gene id frem1b
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 15050182 ~ 15079767 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tggagaaatgtgtgtgctAGTCTGAGTTGGTTAAATATGTATGGGCTGTTGGATAAAATGAGTTTGGAGAGGGCCTGAATGCCATAAAACATCAAAGTCCTCTGAACTCAGCGAACAGAGGTTGTGGCAGGCAGGGGGCTGGATGCACACAGACCCCCCGCAATCTTTCAGGACCACTGAGCAGACGGAGATTCTCCCACAAACACTCAGCAGAGAAGGCCTGAAGTGGAGAGTCAGCTGAAGCAGCAGCTGAACAAACAAGAGAGATGGGGGTGGTGGACCATGTATGGACACTGGTTGCCTTAAGCCTCATCCTGCCCCTGACCCAGGCAGAAAGTGTATTGAGGTTGAACAATGGACTGCGGGTGATCCGAGGCCAGAGTGTTTCTGTGACCACAGAAGAGCTGCAGTTCAACTCTGATGGGACCTCAGAGGCCTGCAAAGTGGAGGTGGTGCTCAATGAGCCTGTGACTCAAAGGGTGGGAAAACTTACTCCGCAGGTTTTTGACTGCCACTTCCACCCTGATGAGGTGAAATATATCCATAATGGGAGCCCATTACTGGAGGAGGACACAGTCATGCTGAGAGTCTATAGATTCACACATTCAGAGACATTTACTGAGACGTTCTTCCTGAAGGTTCAGGTTCTGGAAGCTCAGAGGAGTCTGATAGAGTTTGGGAAAGTTCCTCTGGTGGTTTCAGAGTTTTACGGCCTTTCTAACACCATTGACAGCAGTGTATTGACCTTCAGATCTGAGCCTGATGTGATCTGTACTGTCCGTCTCCTCACCTCTGAGATCAGCGTCCCGATGTTGGGTCAGGTCATTAAAGAGGATCTGGCACAGACAGATCAGGCATCTGTGCAGAACCCTGGGCTGAGGAAAGGTCGACAAACAGCTATTTCTTGCCCTGGAAATAAGGCCTGTGTCCACAACACCAGAGAGGTACGCTTCCTGAAGGCCAGTTGCAGTGAGTTCCTCACTTCAGGCTTAAAGTACCAACATCTCAGCCCTCCTTCACCTGAAATTGACTATGTGCCACTCCGAGTAGAAATCAGAGATCAAAACACTCGAGCCCTcttgaagACGGAAAGTGTTTGGCTCCCAGTCCTGATCCATGGAGCCATGCAGAACCAGCCTCCCCATGCTGCTTTCATGTCCATGTTCATCCTAGAAGTAGATCAGTTCATCCTGACCCCCATGACCACAGCTGTTCTGGATGCCAAAGACAATGAGACCCCACAGGCTCAGCTGGTGTTTAACGTGACCAAGCCTCCAGCAGAGGGCTACATCACACATCTGGATGATCATACCAAGGCTGTATTCTCCTTCTCTTGGCAAGACCTGAATGACATAAAGATTGCATATCAGCCCCCAAACAGCAGCCACACCAGCAGAAAGAATATTGAGGTTGATTTCCAGGCTATAGATGGCTTCTTCACAACTAGTCCTCCTATTATGGTGCATATCTCAATCCGCACAGCAGAAACAAATGCTCCTCGAGTCTCCTGGAATCTGGGGCTGGATCTACTGGAGGGTCAGTCCAGACCAATCACGTGGGAGAACTTACAGATTGTCGATAATGACAACATAGACGCCGTGACTCTGATAGCTGTGGACGGTCCTCTACATGGACGACTCAGTGTTCGAGGTGGAAAGGGCTTCATGTTCAAAGTGAAGGACCTCCGTGAGGGCATGGTGGTTTATCATCATTCTGATAGCGACACCACGAGGGACTACATCGTCTTCAGAATCACAGATGGACGCCACAGCATTCGTCACAAGTTTCCCATCAACATCCTCCCTAAAGACGACACTCCTCCTTTTCTTATCAACAACGTAGCATTTGAGGTGCAGGAGGGGGGTTCAGTGTTGGTGGAAGAGTATATGCTTATGGCATCAGATCTGGATTCCAGCGATGACTATATTCACTACCAGCTTGTTACTTTCCCCAGTGCAGGAAACATAGTCAGGAAAAGCTCTGCACATGAACCAGGTGTTCCAGTGAAGACATTTATGCAGAGGGACATATTACAGGGCCTGATCTactacaaacacacaggagAGGAGATTTTTGAAGACTCATTCGACTTCATCCTATCTGACATCCATGAACCACCAAATCTATCTGACAGACATACAGTGGTGGTCCACGTGTTCCCTGTGAAGGACCAGCTGCCAGTGGAGGTCTCCGGCACAGTCCGTTCCATCACAGTTAAAGAGACGGAGCTTGTTTATATTACACAGAGCCACCTTCACTTCCAAGCCCCCGAGCACCCAGACACTGACCTGATGTACTTCATCACCCAATCCTGTTTCAGCCCTAACAAACCTCAGCTACCAGATGCAGGTAGACTCTTCTACACAGAAACTACAAAATCCATGAAAAAAGATGCCATGATTCCAGTACTTAAGTCATTTACTCAGCATGCAGTAACCCACCACAAGATAGCCTACATGCCCCCTGTTGAGGATATCGGTCTTGAGCCACTCTTCGTGCAGTTTGTCTTCTCTGTAAATGACCAACAGGGCGGCGTGCTCACTGGACTTATCTTCAACATCACAGTCACACCTGTGGACAATCAGGTTCCAGAGATGTTCACTAACCTGCTGAGGGTAGAGGAAGGTGGAAGTAGTTTCCTGATGGAGGAGCACCTATTGGTGCGTGATGCTGACAGTCCGAAGGAGAAACTCAGGGTGCAGGTGCGAACACAACCCCGGCATGGCAGACTGGAGCTGCAGGGAGTGGTTCTATCAGAAGGGGAAAGCTTCCAACTACAGGACCTAAAAACACTGAGGGTCAGATATATCCATGACGATTCTGAGACTACAAGGGACAGCATAGGCCTTACAATCACAGATGGAATCAACTCTGCTCAGAGTGAACTTCTGGTGCAGATCCTCCCTGTGAATGATGAGCCCCCACAGCTTGGCTTAGGCCTGAAAGATGGGCTGTCCTGCAAGGAAGGCAGTCGTGTGCAGATTACTGCTGAGTATTTATTTGCTACAGATGCAGACAGTGATGATACCCGACTCACCTACATGCTGGCTCGGACTCCGACCCATGGGGTGCTGCAGAGGAACGGAGTCATCGTGGACAAGTTCTCTCAGCTTGACGTGCTCAATGGCCTCATCTTCTACCTGCACACAGGAGGTGAAATTGGTCCAGATCCCATATCAGACACTGTTACTCTTATAGTGTCTGATGGAGAGGCCGGGACAGACGGTTGCTGCCAAGAAGATGCAGTCCCACCACCTGTCCCTTTACATGGGACACTTCCTGTGTATGACcttaatgtcactgtgattcCTGTCAACAACAAGGCACCATCCATAATTATAGGAAAAATGTTGGTGGTGGATGAGGGAtctgctgtgtgtctctgtggtGATCTGCTGACGGCTACAGACCCTGACACTAAGCCAGACCATTTAAACTTCTTCCTGGAGATCCCACCTCAGTATGGCTTTCTGGAGAACACCCTTCCCTCCCCAGGCTTTGAAAAGAGCAATGCGGGAATCCAAGTGGTTTCTTTCAGTCAGCTCCATCTCAGCTCTGGATTCATCAACTATGTCCAGTCGATTCATCTGGGTGTGGAGCCCACAGCAGACCACTTCACCGTTAGTGTCAGTGATGGAGTCCATAAGTCTGAACCTGTACCTTTCTACATCATAATCAACCCCACGAATGATGAGGCTCCATCTCTGTTTCTGCAAAACTTCACAGTCATGGAGGGAGGAATGAAAAATCTCAACCCTGCCATTCTAGATGCAGTAGACCTTGATGCTCCACCTAATCTTCTGAGCTTCACCATCCTTGTTCCTCCTGCTCACGGGACTCTGCTGCATGGGATCTATGGGCTTGACATGAGCCAATATAAGGATATGGACAAAGAGATTTTGCAAAGGAGTCTACTGGTGCACTCCTTTACTGTACAAGCACTGGGACAAGGAATGAAGATCATGTATATGCACGATGACACAGAAACCCGTGAGGACACTTTCACCATGCAGCTGACAGATGGCAGGCATGCTGTCCAGGGGACTGCATGGGTCCACATCCTACCAGTCAATGATGAAATGCCCCGGCTGATAAAGAATGCAGGTTTAGAGGTGGAGGCTTTGGAGAGGAGGGTGATCTCCAGTGTGGTGCTGGAGGCGGAAGACCTTGACACCCCCAGTAACCAGGTCTACTATATTCTTAATGCGAGCCCCAGATTTGGCCTTCTGCAACTCAAGACAGAGGCTGGATTGACCGACCTGAACGCAGGTCAAAACTTTACACAGGCGGATGTGGAGATGAACCGCCTGTTGTACAAACACACTACATTCAGTGGGCTCAAAGGTCATGACCACTTCCACTTTTTCCTCAGTGACAGAGACAATGACACACCTCCACAGAGTTTCTTCATCACTGTCCAAACTGTTCAGAAAGGTGACATTTCTCTGATCACTAAGCCCATGACTATATCGGAGGGGGAAAGGGTTGTACTGACCACAGACATTCTGATGGCTACAGACAGTGGAAGCCAATCATTTGAGCTCGTCTACACCGTGACTGTCCCTCCTAAACATGGACACCTGCACATAGTCCAGTACCCAGGAATACCTCTGCTCTCCTTCACCCAGATGGATGTGGCTTCACACCGAGTGTGCTACACTCACGACAACAGTCATTCTACTGACCACGACTCCTTCAGttttgaCATCAGCAATGGCGTGACCTCCATTAGGAGTAGCCTCACCTTCATAGTGGAGCACCATGACCGTATCCCACCCACCCTGAGCATCAACACCGGCCTCCAGCTTACAGAAAGCACCACAAGAACCATCTCACCTGAACACCTTCAGCTCAGTGATCCTGATACACCCTTAGAGAATCTCACCTACACTGTTATTCAACCACCACAGTACGGCAAGCTACTGTTAAAGGGGTTTCCCATGTCCCGGACCCACTTCACACAATTAGACATCAACAACATGCATCTGAGCTACCAGCATCTAAACAGTTTTTCTAAGATTGACAGGTTCACCTTTCAGCCATCAGATGGAACCAATAAAGGCTATCTGGAATATGGACAGCTGAAGGAACAAGCGGCGGTTTTCACAATACAGATAGAGGTCTTAGACAAGACCCCTCCACACATTGTAACTAAAGGGACCCCCAGCACAGTGGAATATCTACAAAACAACCAACATGGCATCTACATCACCTCCAAAGATCTCCAGGCTTCAGATCCAGACAGCCCTTACCAAGAGGTGGAGTTCATCATCACACGGCCTCCACGTTTTGGATACCTTGAGAACGCCATCACAGGCAGGTGGCTATATCAAGGGACGCTTCACCCAGAAGGATGTGGATCAGAAAGCAGTCCGCTATGTCATTCCCTCAGACATGGAAGTGACAGCAGACAGCTTTGAGTTCCAGCTCACAGACCCAGCAGGAAACATCATGCTTCCAGAAGTAATGGAGCTCCGATGGTCCCGGGTGGAGTTGACGGCTTCCTGTTATCGTGTGTGTGAGAACGCAGGAACTCTAGCTGTGCAGGTGATGCGCAGTGGGAATAGCATAGACCCTGCCTATGTTG

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403448.2 lncRNA upstream 47949 14994688 ~ 15002233 (+) True LOC113533733
XR_004579076.1 lncRNA upstream 47949 14994688 ~ 15002233 (+) False LOC113533733
TU214923 lncRNA upstream 72631 14960885 ~ 14977551 (+) True G181599
TU214912 lncRNA upstream 119320 14867927 ~ 14930862 (+) True G181588
TU214795 lncRNA upstream 385118 14664701 ~ 14665064 (+) True G181475
TU214970 lncRNA downstream 9973 15085901 ~ 15086320 (+) True G181632
TU215238 lncRNA downstream 217310 15293238 ~ 15294067 (+) True G181851
TU215210 lncRNA downstream 223320 15299248 ~ 15308946 (+) False G181824
TU215211 lncRNA downstream 228408 15304336 ~ 15308946 (+) True G181824
TU215365 lncRNA downstream 296830 15372758 ~ 15372970 (+) True G181944
XM_026945146.2 mRNA upstream 201082 14838497 ~ 14849100 (+) True tm2d1
XM_026920401.2 mRNA upstream 338455 14708927 ~ 14711727 (+) True pdzk1ip1
XM_026928780.2 mRNA upstream 346094 14696583 ~ 14704088 (+) True tal1
XM_026917034.2 mRNA upstream 377452 14670881 ~ 14672730 (+) True ier5
XM_026920060.2 mRNA upstream 400497 14622543 ~ 14649685 (+) False si:dkey-121a11.3
XM_034308424.1 mRNA downstream 4992 15080920 ~ 15085382 (+) True atpaf1
XM_026927363.2 mRNA downstream 12312 15088240 ~ 15096387 (+) True rab3b
XM_026923150.2 mRNA downstream 23387 15099315 ~ 15114363 (+) True nrd1b
XM_026913059.2 mRNA downstream 39122 15115050 ~ 15126124 (+) True axdnd1
XM_026912512.2 mRNA downstream 56079 15132007 ~ 15148372 (+) False tdrd5
XR_004579090.1 other upstream 338455 14708927 ~ 14711727 (+) False pdzk1ip1
XR_004579085.1 other upstream 403360 14622543 ~ 14646822 (+) True si:dkey-121a11.3
TU214729 other upstream 455567 14589919 ~ 14594615 (+) False ankrd29
TU214656 other upstream 487216 14561690 ~ 14562966 (+) False LOC113540185
TU214440 other upstream 875964 14165026 ~ 14174218 (+) True G181175
TU215983 other downstream 1179135 16255063 ~ 16255852 (+) False LOC113532318
XR_003403746.1 other downstream 1504308 16580236 ~ 16580303 (+) True LOC113537281
TU216336 other downstream 1507375 16583303 ~ 16584943 (+) True G182819
TU216450 other downstream 1837330 16913258 ~ 16922922 (+) True G182877
trnak-cuu_26 other downstream 1953944 17029872 ~ 17029944 (+) True trnak-cuu_26

Expression Profile