RNA id: XM_034308491.1


Basic Information

Item Value
RNA id XM_034308491.1
length 6778
RNA type mRNA
GC content 0.46
exon number 27
gene id mast3b
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20806331 ~ 20839589 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCACTAGTTACTCGCGAGACATGAGCGCATCTTTCACTCGTGGAGATCCAGTCGGTTCCGTTTGGATCAGATCTACTTGACAGAACACGACCTTGGCTCTGGGTGGTTGAGACACGGCGATGTGGCTGATTTGTGCCTGAGAGAGATCTGAGCCAGATTTCAGCACTTTGCTTGTTGCAGATCGTTGCAAGGCATGAAGAGGAGAGACAAGCTGAAAATCCCCTCCCTCACTTTggaTTGCCGCAGCAGTAGGAAGAACCTCGGGGTTGGGACGCCTTCCCCGACGCGCCCACTCTCACCCCTGTCAGTCCACACAGCTGCCAGCAGTCCTTTAGATAGCCCAAGAAATGTGTCAGCCATCGCCTCCCTCAACTTCCCTTTTGCCCGCAGCCACCTGGCTCGAACTGACAGGGCAGAAGGTAGGAGGTGGTCACTGGCCTCACTTCCATCATCTGGCTATGGCACCAATCCACCCAGCTCCACTGTCTCTtcctcctcctcttcccaAGAACGTTTGCACCAGCTTCCATACCAGCCCACACAAGACgagcttcacttcctgttcagaCACTTCCGTAGCTCGGAGAGTATGACAGATGAGGATGGCCGAAGCTCATCTTTCATACGCCCACGCTCCCGTAGTCTTAGTCCTGGACGAACAAGTGGCTCCTTTGACAGCGAAACTGTGATGATGAACCATGTTTACAAGGAGAGGTTTCCTAAGGCGACAGCGCAGATGGAGGAGCGCTTGCTGGACATCGTCACACACTGTTCTGCCGACAGCACTTTACCTCTGGGAGATGGAGTGCTGGGTTTCATCCAGCACCAGCTGGTGGAGCTCGCCAGAGACTGTCTGGACAAGTCACAGAAAGGCCTGATCACCTCCCTCTACTTTCTAGAGCTGCAGGAGAATCTTGACAAGCTGCTGCATGAGGCGCTGGAGCGTTCTGAGAGTGAGGAGGTCACAATCATCACCCAGCTGGTAAAGAAGATTCTCATCATCATATCGCGCCCTGCAAGGCTGTTGGAATGTCTGGAGTTTGACCCTGAAGGGTTCTATCACCTCCTGGAGGCAGCAGAGGGGCATGCTAAAGTTGGCCAAGGCATCAAAACTGACATTCCCCGTTACATCATCAGTCAGCTGGGCCTAAATCGAGATCCCTTAGATGAAGTGAGTCAGCTAGAGGAAAACTATGATTCTGGGCCCTCCCTTAACGTGGACACAGAGGAGCCTGATCAGAATCTGAAGTCTGTGCTCACCCCACCCCGAAGGAAACCACTGGAGAGTGACTTTGAAACCATAAAGTTGATCAGTAATGGAGCATACGGAGCTGTGTACCTGGTGAGGCACAAGGAAACTCGCCAACGGTTTGCAATGAAAAAGATCAACCGGCAAAACCTGATCCTGAGGAACCAGATCCAGCAGGTGTTTGTAGAGCGGGACATCCTGACATTCGCAGAGAACCCTTTTGTCGTTAGTATGTTCTGCTCTTTTGAGACCCGTAGGCACCTCTGCATGGTCATGGAGTATGTGGAAGGCGGTGACTGTGCGAATTTGCTCAAAAACATGGGCCCACTGCCGGTTGATATGACCCGATTGTACTTCGCGGAGACCGTTCTAGCTTTGGAATACCTTCACAGCTACGGCATAGTACACCGAGATCTCAAACCTGACAACCTGTTGATAACCTCAATGGGGCACATTAAGCTGACAGATTTTGGCCTCTCCAAGATTGGTCTGATGAACATGACGACAAATCTCTACGAAGGCCATATTGAGAAAGACACCAGAGAGTTCATCGACAAGCAGGTTTGCGGCACGCCTGAGTACATTGCGCCAGAGGTTATTCTACGGCAGGGTTATGGCAAACCAGTAGACTGGTGGGCTATGGGAATCATACTTTATGAGTTTCTGGTGGGCTGTGTGCCCTTTTTTGGAGATACACCAgaagaactttttgggcaagtTGTCAGTGATGATATCATCTGGCCAGATGGGGATGATGCTTTGCCAGTGGATGCCCAGGACCTGATAACGCGGTTGCTGAGACAAAATCCTATTGAACGACTTGGGACAGGGGGAGCAACAGAGGTCAAACAGCATACATTCTTCACCGGCCTGGATTGGAACGGGCTGCTTCGCCAAAAAGCTGAATTTATCCCTCAGTTAGAAGGAGATGATGACACTAGTTATTTTGATACTCGATCCGATCGCTATCATCATTTAGTTTCTGATGAAGACGATGACGAAACAAATGATGACGAGTCTTCCCTTGAAATTCGACGGTTTTCCTCATGGTCAAATCGTTTCAGCAAGGTATACAGCAGCACAGAATATCTGGCCACGCCATCCAATCTGAGTTTCTCATCTGACCGAAGTCACAGTGAAGAGCATGAGGAGCGTTCAGATGGCCGAGAGAGCCATTCACCTGGAGAGATGCACAGACAGAGCAGCACAGGAGCCCCGGATAACAGGAGACTCTCAGGACAGCGACCATGCCTGCGACCGAGAGCCTCATCCAGCTCCTCCCAGCCAGACAGGTGTGTAAGCCCTCTGGTGGCGAGCAGTACACACAGCCTGGAAGCCATGCCACGTGTTGCACTCTCCACTGATGACGAAGCTGAGGTGGTTGTATCCAACCTGCGACGAATCAGGCTGCGTAGCAACAGTACAGGAACAAAGCACTCATCTCCAAGGGAACACGGCAGTCCACGATGTTTTGGCAACCAGCTTGAAACCCCTGACAGACAGCATCTCTCTCCAGGGGGCAAAGTGCCAAAATCTGCCTCTGTCTCAACACTGTCCCTCATCATTACTCCAGATGACATGAGCGGAGGTCTTCAGGCCAGCCCCATTTCCCCACACTCCATTTCTTCCAATCCCTCATCCCGAGATTCCTCCCCAAATCGAGACTTGTCCCTCAGCATCAGCTGCCTGCGGCCTCCCATCTTTATCCATAGCTCAGGCAAGAAGTACGGCTTCACCCTGCAGACTATCCGTGTCTACATCGGAAATAGTGACGTTTACACCATCCATCACATGGTCTCGAGTGTGGAGGAAGGCAGTCCTGCTCATGAGGCGGGCCTGAGAGCGGGAGATCTGATCACTCATGTGAATGGAGAGTCAGTGCAGGGACTGGTGCACACAGAGATGATGGAGCTGCTTCTTAAGAGTGGTAACAAGGTGGCCTTGCAGACCATTGCCCTAGAGGACACAACAATTAAAATCGGACCAGCACGGAAAACCAGCTACAAGGGCAAGATGGCCCGTCGCAGCAAGAGGAGCAGGAGAAAGGACAACCAGGACCGACGGCGAAGCGTCCTAAAGAAGCTGTCTAAGCAGAGCACAGTAATGCACAGCAGTCGCAGCTTCTCCTCTGGCCTCCATCACTCTGTTTCCTCCAGCGAGAGTTTGCCTGGCTCCCCTACACACAGCCTGTCCCCTGGACCTTCCACACCATGCCGCAGCCCAGTTCCAGACCACGCTGCTGATGTAAACTTTCCCCAAAGTGGCTCGCCATGCTCCAGCTCACCAAGTTCTCCAGCTGTCCAAATGCGGCCCAGCTCACTTCATGGCCTGGGATCCAAACTGGGCGCTCAACGTTACGCTAAAGTTGGTCGACGCAAGTCAACCAGCAGCATTCCCCCATCACCATTGGCCTGCACTTCCTCCCCCCAGGCCCTGTCTCCACAGCACTCCTCTTCTCCTTTACCCAGCATCACCAAGACCCTTCATTCCTACCATGGTAAAACACTGTCCCCTCCTACTATTGTTCGTCACGGGGTTCGACCCCGCAGCACCGAGATTCCTGTCTCGCCCCTACTGAAGAGAGTCCAGTCTGCTGAAAAGCTCTCTGGTGTCTtccatggagaaaaaaaggccCACGGTCCACGACGGCACACTTTAGAGGTTCCTCACTGTGAGTTGGACGTGGGTGGAGATGCAGAGGTGGAGTCTCAATATGGCTCAGACCATGGCAGACTTGGGGGATTTGCTGCTGGCCAGATTGTGGTGATGCGAAAGCTCAATCTGTCCGAGCGCCGCGACTCCTTTAAAAAGCAGGAGGCCGTGCAGGAAGTAAGTTTTGATGAGCCAGATGAAAGAGCCGGTCAGACTCCAGCCACACCAAGCATACAGGCTGATGCTCGGCCCAAGCACAAAGCTGAGTGGGTGGTGCCAAACCCGCAGTCCAGGGAGGAGTGTGTGGTCAGGAGGGTCCCTCTGGTTCCCCAGATCGCTGTTCAGGGCTCAGAGAGTGAGGAGCTGGAGGACTGGCAGCCATGTTCTGATGAGGAAGCCGAGGGGAAAAACACAAGTGGGAGTTTGGACTCTCACCCAGAAGACAAGGGAAGACCAGAGAGTGCGTGTTCTTCCAGCATTTCATCAGACAGCTCCTCAGTGGCATCTAAGAGCAAAGGTCACATTACTGGCACAGAAGAAACCTCAAGCATGAGTCCAAGGAAGGGGAAACTCAGAGGAAAATGACTTGGCTAATGTTGATGTCACTTTAATATTCCATACTCGAGTTGACAAGGAAGTTATCTGTACTCCTCTCTCAGCGCTCCTGCTGAATGAGTATAAGTGAGAGCGATTGGGTTGGAATGCCATTTAGTGTCTtgtaaattcaatttaaaaatgaagtaaGCTAGATTTTTACAGGggaatatttataattttttaatgtgttgGAATTCTAATGATGGTGAAAAAGAAACCTGATGGTAACCAGCTGGTATTTTGAACCATCGAATGGGGAATGACTtgacatttttatgaaaatgtattttcaggcagtttgtatgtttgtatatcAAGTGTAACTAACATGGTGAATTATCACAAAAGACTAGGTGTGAGATAAGAATCATGTAGTGTTTTAAGCGAGGGCtaaacatacaaacatgcaTTTGGTTGGTCATGGTTTTCAACTTGTCAGTATTTTTGGCTTATTGAACTCCACCATCTAGTCCAGTTCTCACAGCTTCATACACAAATCTTACTGTATTAGGTTCTTTGTAGGTTTTTTTGTGTGATCCACTGCATTTTGCACCATCTAACCCCACTTTGTTATGTAGGCTAAGGGTATTTCGGCTCAGGGCTTTTGGCTGTAGAAGTTTCACAGTTCACTTGGTGTTTGTAAGGTGTTAGATTTATTAGCAGCagatgtaggtttttttttatgtttgtacaGATTTGATTGATGGATATTGTGGTGCCTCAAAGTTAACATATAGATGGTAGTGACTCTTTTTAACTGTGGAACCTAGTTTTATGTTCATTAGTCTGATTTCTACTGTATATTCATGTTATGGAAACTATGCTAACTGGAAAACTGCAGAACATTTCCATAGGCAAACTTGAATGGGTCCCCTGCTTCAACTGCATTTCCAGTAGGGCTCTCAAAGCTTTTCTCTGTTTCCTAAAACAAAGTTTTATTTCTGCAGATATCTCATCCCTTAAAAGGGATTTTAAAAAGAAGAGCTTTCAGTGAGTATAAAACTTTCAGATACTTGCaatgcatatttattaaacCTTATTTAAGACGTCCTGTCAAATTCCCTTAAAATCACAATTTTACaggacttctttttttttttccccaaatgaaCTTGGTGTGCTTGTTATGCATGTGATTATAATGTGGTTTCTAAACCATATTGTTTTCTATATGTATTCCGTAGCTTGTTTATCTAACTACCTATTGTATAGGGagaatgtttacattttttccattGACTTAAGGGTTTTTTGTGCAAATACGTGTGTCTTAGCTTGCCCTTAGCAACTGAATTTTCTAAATATTTGAAATGCAAATAATAGAAGTGCAGTTTTCTCTTAACACTGATCTGTTAAACAATCTCATCTCCCTAAAATCTCTTTTTCTTCccccaaaaaatacaaaaatgcccAAATGACCGCATTTTTCTGTATAGGTGTACTACAGTTTAATGAACATTAATGATTTCAACTGCTTATTGGAAGAGGTTCATGATTTTTCAACGTAGTTAGcaggaagcttttttttttttttttgaaacatgaacaaatctttttttttttttttttttttttttttgtctgaaaaaaaaaatactctccTGGTACTTTGGAGTCTCTTATAGTGCAAAACTGCATCCTGCTACTATCCTTTGGTGCTACTTGAATCTGTAATGCATTCCATGTTTGACGGTAATTAATGTCTCATACGGCATAATTTTGAGACCCTTGATTAATTGCATGCTGCATGTATTTTATAGTGAGCACACAACAAATGCTCGCATGGCATTCAGTGCAATATGTGTCTCCTGGTGCAGTACAACCAAGCCTATGACTTTCCGTAAAGTTTGCAGTGGTTCTAATCAGTTAGAAATGACtatgttaattttaatattactgCTCACTATATATTGTGACTATAAATTATTTGTTCTTTCCTAACTAGTTGTGTAGCACCTGAACCTCCTTAATTAACCAATGGTAAGATGGGTTGTTTCTGCTTTAATTTTATCCTGTCCAGATCTGGTCAAAAAGAACTGGAAGTTATGCCGatgaccaggaaaaaaaaaaataaaaaaaataaatcagttttgtatatttatatgcaaTAGTGATGTTCTTCTTCCTCCATTTCTTCACATCTGTGAGGatcattggttttttttttttggtctgtgcTGGTTtgtaaaaatacttttatatctattttttgtaatgttgtTATACTTGTTGGCCAGCCCAGTCAATGCTTTGTAATAAATCATCACGTGTTGGCTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219189 lncRNA upstream 98305 20705994 ~ 20708027 (+) True G185206
TU219165 lncRNA upstream 238040 20568076 ~ 20568292 (+) True G185182
TU219046 lncRNA upstream 251208 20554856 ~ 20555124 (+) True G185092
TU219010 lncRNA upstream 299652 20506477 ~ 20506680 (+) True G185063
TU218982 lncRNA upstream 369745 20435795 ~ 20436587 (+) True G185037
TU219346 lncRNA downstream 50658 20890247 ~ 20896461 (+) True G185330
TU219404 lncRNA downstream 124946 20964535 ~ 20967901 (+) True G185381
TU219446 lncRNA downstream 163239 21002828 ~ 21024560 (+) True G185418
TU219472 lncRNA downstream 219475 21059064 ~ 21060228 (+) True G185436
TU219486 lncRNA downstream 237586 21077175 ~ 21084699 (+) False G185439
XM_034308861.1 mRNA upstream 84526 20719431 ~ 20721806 (+) True si:ch211-1a19.2
XM_034308874.1 mRNA upstream 88430 20716531 ~ 20717902 (+) True sid1
XM_026919781.2 mRNA upstream 242400 20548259 ~ 20563932 (+) True tmem259
XM_026922496.2 mRNA upstream 625090 20171890 ~ 20181242 (+) True slc1a8a
XM_026920083.2 mRNA upstream 635924 20163215 ~ 20170408 (+) True LOC113530255
XM_026920038.2 mRNA downstream 41946 20881535 ~ 20887344 (+) True LOC113530200
XM_026920046.2 mRNA downstream 43002 20882591 ~ 20887344 (+) False LOC113530200
XM_026912456.2 mRNA downstream 93153 20932742 ~ 20947791 (+) False elovl1b
XM_026912465.2 mRNA downstream 93623 20933212 ~ 20947791 (+) True elovl1b
XM_026912474.2 mRNA downstream 95400 20934989 ~ 20947791 (+) False elovl1b
TU218923 other upstream 655438 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 934869 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 971918 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1106058 19695244 ~ 19700274 (+) True rps15
TU218486 other upstream 1252810 19550382 ~ 19553522 (+) False si:ch73-40i7.5
XR_004579103.1 other downstream 350197 21189786 ~ 21210539 (+) False wipf2a
trnap-agg_1 other downstream 1119299 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 3093277 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 3094543 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 3095046 23934635 ~ 23934706 (+) True trnaq-uug_3

Expression Profile