RNA id: XM_026914564.2


Basic Information

Item Value
RNA id XM_026914564.2
length 2201
RNA type mRNA
GC content 0.57
exon number 6
gene id tbr1a
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21554701 ~ 21559002 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCACCTGCAGCACTGCACTCCGCCATCGGCCAGAAATGCGGCCAGCGACTTTCCTGACGAGTTGCTCGCCGAGCACCACCCCGCGCCGTCCTCCGGCGCCGCCCCAGGGAACCACCCGGCTCTAACAAAACTCCCCGCCGAGCTGACCAGCGAAGAAGACGAGAGGAGCGAGCTCGCGCCCGCGCGCGACACCGGCACTGGGTCCGACGCGCAGCGCGCTTTGGATGGGAGCCACGCGGAGAAGCGACACGTGCCTGAGCCGAGCCGAGCGCGCACCACCGCCGCCatctcctcctcgtcctccgcGACCATGTTCTCATACGCGGCGCAGCACGGACACACGCTGCCGCCTTTCTCCATAAGCAATCCGGGTCACTTCGTGGCGCATCACGCCGTCATTCCAAACGGGCCGTATGACGGAGTTCTGTCCGGTGCGCCTAGACAGAACTACACCAGCGCCAGTTACCCGTACGCGCAGGCGTACAGTCAGGCGTACCAGAGCGGCGCGTTGTACCCGCTCTCCCCGGCGCACGCGGGACTCATGGCCGCCAAAGGGCAAGTGTATCTCTGCAACCGCGCGCTCTGGCTCAAATTTCACCGACACCAGACCGAGATGATCATCACCAAGCAAGGGCGACGCATGTTTCCCTTCCTAAGCTTCAACATTTCTGGACTTGACCCGACGGctcattataatatttttgtggACGTTATTCTGGCGGATCCGAACCACTGGCGCTTCCAGGGAGGAAAGTGGGTCCCGTGCGGAAAAGCGGACACCAATGTAACAGgAAACAGAGTGTACATGCACCCGGACTCTCCAAACACAGGAGCGCACTGGATGCGTCAGGAGATTTCATTTGGTAAACTTAAGTTAACAAACAACAAAGGAGCTTCCAACAACAGTGGCCAGATGGTCGTCCTGCAGTCGCTGCATAAGTACCAGCCCCGAGTGCACTTGGTGGAGGTGAATGAAGACGGGACAGAAGACTCGAGCCGATCGGACCGTGTGCACACGTTCACCTTCCCGGAAACGCAGTTCATAGCAGTCACTGCATACCAGAACACGGATatcacCCAGCTGAAAATCGACCATAATCCATTCGCTAAAGGATTCCGGGATAATTATGACACGATCTACACGGCGTGTGACAGTGAGCGCCTGAGCCCGTCCTCTGCTGACTCCCAGCGCGCACAGCTGATGCCGGCCAGGTACACGGCGGCGAGCTCGCTCCTTCACGACCAGTTCGTCGGCCATTATTCGGGTCCCGGAGGGAGCGTGGAGCGCGCGCTCCCGTTCACTAACAGCCTGGTAGGCTCGGAGCAAGCCGAGGACAGATGGTTTAATAACAGATTAGATTTTCCCGCTTCGACTTACGACGCAGCTGATCTGACTGGCAGCCTGCCCTCCTTGCTGCCCTATCCTGCCGCTgcaggggtcaaaggtcagacgCTTTCCGCTACCCCGACTTCTGGGCGCGCGCTTAGTGCCTACTGCGCCGCGCAGGCGGGCTGGGAGTCGCGCGGTGCGGGGCTGCCGAGCTGGATCACGGACACCAGCTTTGAGCGCTCCTACCTGTCCGAAGACGGGAGCACGGAGAAGGACGCCACCGCACCGGAGGTGCCCGACGCGAGCAAAGACAAGGACGCACCGGATTCGGGCTGGACAGAAACTCCGTCTTCGGTGAAATCAGTGGATTCAGGCGACTCGGGGATTTTTGAGCAGGCTAAAAGGAAGAGGATGTCACCGCCGGTGCCTGAGGAGCACTCACCGCTCAAAACAGAGCTCCTGAGCGCACAGGACGGAGCCCGGAATATGAACTACTTCACTTTCTATTCTCAGagttaaacacacagcatgcgGGGTGGACCAGCTGCTCCACCAGACTTCTTTGTTTtgaccttatttatttatttacttatttattgattgattagGTCGGGGTGGTGGGTGTCAGAGAACATGATCCTGAGCAAGCACATTAGGCCATTTGACTTCACAACCCCTTCTGACTGAAGCCATAGTTTATACAAATCAAACCTGATGCTGTTTCTGTACATTTCATTAGGCCTAATGAATTTAGTGGGGTGGGTGCAGGGGGTCAGAGAGAATGATCCTGATCCTGGACAAACACATTACACCATTCGGAAAAGCTCATGAGGCTGTAGCCATGGTCTGAGAGCCAAacattcaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219622 lncRNA upstream 66174 21488324 ~ 21488527 (+) True G185546
TU219609 lncRNA upstream 87763 21466332 ~ 21466938 (+) True G185533
TU219589 lncRNA upstream 108221 21444384 ~ 21446480 (+) True G185519
TU219570 lncRNA upstream 144909 21407479 ~ 21409792 (+) True G185503
TU219569 lncRNA upstream 150649 21395362 ~ 21404052 (+) True G185502
TU219890 lncRNA downstream 1165 21560167 ~ 21560379 (+) True G185751
TU220105 lncRNA downstream 461846 22020848 ~ 22021059 (+) True G185940
TU220132 lncRNA downstream 819891 22378893 ~ 22381003 (+) False pcdh17
TU220165 lncRNA downstream 822396 22381398 ~ 22381611 (+) True G185997
TU220216 lncRNA downstream 869856 22428858 ~ 22429104 (+) True G186046
XM_034308416.1 mRNA upstream 2434 21532681 ~ 21552267 (+) True psmd14
XM_034308765.1 mRNA upstream 164495 21383873 ~ 21390206 (+) True lgsn
XM_026914590.2 mRNA upstream 164495 21383874 ~ 21390206 (+) False lgsn
XM_034308764.1 mRNA upstream 164495 21386972 ~ 21390206 (+) False lgsn
XM_026922435.2 mRNA upstream 181330 21359474 ~ 21373371 (+) True col9a1a
XM_026918527.2 mRNA downstream 2053 21561055 ~ 21605914 (+) False slc4a10a
XM_026918518.2 mRNA downstream 2055 21561057 ~ 21605913 (+) False slc4a10a
XM_026918535.2 mRNA downstream 2055 21561057 ~ 21605913 (+) False slc4a10a
XM_026918544.2 mRNA downstream 9535 21568537 ~ 21605913 (+) True slc4a10a
XM_026925444.2 mRNA downstream 52774 21611776 ~ 21615292 (+) True si:ch211-227n13.3
XR_004579103.1 other upstream 344162 21189786 ~ 21210539 (+) False wipf2a
TU218923 other upstream 1403807 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 1683238 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 1720287 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1854427 19695244 ~ 19700274 (+) True rps15
trnap-agg_1 other downstream 399886 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 2373864 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 2375130 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 2375633 23934635 ~ 23934706 (+) True trnaq-uug_3
trnaq-uug_4 other downstream 2378015 23937017 ~ 23937088 (+) True trnaq-uug_4

Expression Profile