RNA id: XM_034308765.1


Basic Information

Item Value
RNA id XM_034308765.1
length 2423
RNA type mRNA
GC content 0.47
exon number 5
gene id lgsn
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21383873 ~ 21390206 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACCATACAGCCGCGGCGGCAGTGTCGTGTCTGAATGAGCGGCTCGCGAGGACCAGGCAGCCTGCAGCAGCCGCGCCCTGAGAGCAGAGCGCGCGCGCGTCACGAGGAGAAAACCAgGCATTAAAGGCTCGAGGAACAAGTAACAATTCAGAAGGATCTACAGAGAAAAGGAAACAGCCTTAATGGATTCAGACCAAATAGATGGAGGCAGTCTCAGCCATGGCAAAAAGAAGGGGGTAAGGGAAAGTGGGGAACAAGTAGCCTCTTCAGAATGGGACAGAAGAAGGTTTGATCTGCCCATAGTCCAGACTGATTTATCTGCTCCAAGCCCCACTGACAACTCCACTATAATTTCAATTGGCCCACACTGCTGGCCCACAGTCTCCACTGAATCACAGCCTGATGACTACACTTATACGGATGAATGGAATAGAGAAGGCCACCCAGACAACCTACCTCCAGAGGCAGGTGTTTCTAGTGTTTCTAAACAAACAATGGAGGAACTGAAAAGCCTATTGAGAGAGCGCTCCATACTAaatacaagagagagagatgaagaccAATTAGTTGGTCATCGCCACACTCCTGGACAGAGAATTGACTGTAAACCAGATGACATACCATCCAAGTCCTTCACAACCTTCAAGCCCACTCTAGGGAGTAGTAGAAGAGCAAGAGATAGTGCTTCATCTGACTGGGAATCTGGTGGGTCATTGAAGACTGGTGGGCATACAAACAGGCCCACCAGTTTTAAGTTACCCACTAGTGAAAGAACATACTGGGTCAACACTGGGATATCGCAGACAGATAACAATGAGAATCCACAAACAGAATACCATGGATCCCAAAACTTCATTACAGAGGTTGAACACATAAAGCAGCAGATCAGCCGTGAGAATATAGGCTTTGTTCGCTTTGAAGCCACTGATCTCCATGGTGTATCTAGATCTAAGACAGTCCCTGCTTCCTTATTTCAGGAAAAAGCGGTTTATGGTGTGCCTATGCCTAGAAGCTACCTGGAGCTGACACTGAGCCCCAAGGAAAATGAGGTTGATCATCCAATTGCTCCCAATTTCAACAGTGATATTCTTCTGATCCCTGATCTCTCCACCTTTCGAGCCCTTCCCTGGGCTGAGCAGACTGCTCGTATCATTTGTGATCCTTGTACAATCACAGGGATCCCTCTGCGCACTTCTCCTCGCCTGATTGCTAAGCTGATGCTTGCTCAGCTTCAAGCCATGGGATTCTCCATCAATTCTTCTTTCACATATGAATGCTGCATCTTTGGATTACCAGAACGGATAGGCCCCAAGGTTGTATTTTTCCCTGCCACTACTTTACTGAGTAATCATGACATGCCTTTCTTACAGCAACTGGTGAGAGGGATGTACCACATGGGCATCAGTGTGGATAGCTTTGCATCTGCCAGTGGTCCAGGACAGATGGAAATCTGCTTCAAGCCTAAATTTGGAATTGAAGCTGTTGACAGTGCCTTCACCTTTCGTACTGGAATTAAAGAAATGGCCAGGAAGTATGACTATTTTGCCACCTTCCTTACTGATGACACCATCTACAATTCTGGCTGCCTGTCCCACAGCCTATGGGATGCCAATGGCAGGAGAAATCTTTTCTATTCAGGCACTAGCGAGATATCCGAGATTGGCAAGAAATGGCTTGGAGGGCTTCTCCACCACTCACCAGCTCTAAGCTGCCTAATGGCACCAGGGATAGGCTGCCGCACTCAGCTTTCCAAAAGCAGTATTTCAAAGAGCACATTCTATGCCACTTGTGGCTGCAATGACAACAGTTGTGCTTTTAATGTTAAGGTTCACGGTGGGCGGGAGACCCACATTGAGAACAAGCTTGGCTCAGCAATGGCAAACCCTTACATAGTCTTGGCAGCTACCATTGCAGCCGGATTGGATGGTATCAAGCGTGACCTCTGTGCAGAACTTTACAAAGCTCCAGTGCAGCAAAAACAGTTTGCCATACCTGTTAAACTGGAGGATGCCTTAGTGGCCCTGGGAGAAGACAGTGTGATTTGTGGGGCACTGGGTGAGCCATTTGTGTATTATTTCATTGCCATGAAACGCCTAGAGATTGAGACACAGGAGACTGATACAGACAGGAACAAAAACCTGGAATACTTCATCTAGATATAATTTCAGAAGTCAGGTAGAATATAATGCAAAAATCACTTCTGAGGAACATAAAGGGATAGGGGTAATGGAGAGGTAGTTTTGTCTAGGTCTTACACCTTTTATGGGTCTGTGTCTGGGACTACCAAGACACTGGAAAGCGACCTTGTCATCTTCGAAATGTGCCATCGTTTCATTTGAACAACCCACAAAAACCTGCACATTCACATATTACtacttcatttttattaccTCATCCCACATTAGAAGAATGGACAAGCAAAT

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0002089 lens morphogenesis in camera-type eye biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0005884 actin filament cellular_component
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219490 lncRNA upstream 44159 21327254 ~ 21339714 (+) False G185439
TU219567 lncRNA downstream 145 21390351 ~ 21390568 (+) True G185500
TU219568 lncRNA downstream 638 21390844 ~ 21391810 (+) True G185501
TU219569 lncRNA downstream 5156 21395362 ~ 21404052 (+) True G185502
TU219570 lncRNA downstream 17273 21407479 ~ 21409792 (+) True G185503
TU219589 lncRNA downstream 54178 21444384 ~ 21446480 (+) True G185519
XM_026922435.2 mRNA upstream 10502 21359474 ~ 21373371 (+) True col9a1a
XM_026930037.2 mRNA upstream 32542 21346217 ~ 21351331 (+) True mrpl4
XM_034308958.1 mRNA upstream 33500 21346217 ~ 21350373 (+) False mrpl4
XM_026935643.2 mRNA upstream 39459 21339943 ~ 21344414 (+) True c11h6orf120
XM_026916820.2 mRNA upstream 59604 21321091 ~ 21324269 (+) True krt94
XM_034308416.1 mRNA downstream 142475 21532681 ~ 21552267 (+) True psmd14
XM_026914564.2 mRNA downstream 164495 21554701 ~ 21559002 (+) True tbr1a
XM_026918527.2 mRNA downstream 170849 21561055 ~ 21605914 (+) False slc4a10a
XM_026918518.2 mRNA downstream 170851 21561057 ~ 21605913 (+) False slc4a10a
XM_026918535.2 mRNA downstream 170851 21561057 ~ 21605913 (+) False slc4a10a
XR_004579103.1 other upstream 173334 21189786 ~ 21210539 (+) False wipf2a
TU218923 other upstream 1232979 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 1512410 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 1549459 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1683599 19695244 ~ 19700274 (+) True rps15
trnap-agg_1 other downstream 568682 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 2542660 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 2543926 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 2544429 23934635 ~ 23934706 (+) True trnaq-uug_3
trnaq-uug_4 other downstream 2546811 23937017 ~ 23937088 (+) True trnaq-uug_4

Expression Profile