RNA id: XM_034308444.1


Basic Information

Item Value
RNA id XM_034308444.1
length 2168
RNA type mRNA
GC content 0.48
exon number 9
gene id txlng
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21043300 ~ 21050473 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTTTTGATATTGTTAATGTTTTACGCGAACACTGTGGGTTTTATCACGAGGCAGAGTTTGTTGCTcgtgtatctgtatctgtatctgatgaACGGGTCATAACCGGTACATTAACCGTCCAAATGACCAGCCAACCACAATAATATAGAAAACAACATCTAGAGCAGTGTGTAACCGGTGGAACTGTTGATGGAGTGGTGTTATTCGGCCATTTTTAAAGCTTTCTGTCTGTGGTCAGTGTGCAGTTGTcagtcagcagcagcagtacagtacagtgagtCACAAGGCGCACGTGCACACAGCAGGAAATTAGCAGGTCCTGTTGGTCTGAGTGAAACACAGCGAAGTTCTCATTATTGTCAGGGGTTGATTTGATTAttagtcttatttatttatttatgtggtGCACGTGTTCCGTGTGGTGGCTCCTGGTGTTACTGTACAGCACGTGGTTCTTCTCCTCCACCTGTAACCCGTTCAGCACGTTGTTCAAAGGCCTCACATGCAGCAGATACTCAAGTAATAACAATCACCAGGTCTGTCAGTAGTGTAACTGTAACCCCTGCTGAGGGAAATTAGCTTCCCAATGCTCGCCTGTATGCGATATGGCATCAACAACCTTCCTAAACATGAAGTACAGCGCATACATTTTTTcgtccttttttgttttcttttcttctatGAGAAACGCTGAACCTTAGCCTAAACTAAGATAGTACGGAGCTAACATGATGGAGACCTCCGGTGTATGTGGAATGGAGGCAGCCACACGTGGCCTTGTGGAGGGTAGCAGTTCCCCTCCCACTAGTGTGACCCCTTCTCAAGATAACCTTGGGGAGTTTGGAGGACTGATTAACACCTGCTGCAACAAAGAGGTAAGAGGGGAGACACCTGGGAGAGAAGATTGCCGGATTGACCCCCTTGAAGGAGAACTGGACTCGAGTGGCGATCAGAACAAGGACCAAAATATGTTTGGAAAAGAAGTGCTGCTACTGATGCAAGCCCTTCACACTTTAGCCACTCCCGAGGAAAAACTTGCTGCTCTTTGCAAAAAGTATGCTGACCTGCTAGAAGACAGCCGCAATATGCAGAAGCAAGTGAAGGTGTTGCAGAAGAAGCAGACGCAGGTCCTCAAAGAGAAGATCCATCTTCAGAGTGAACACAGCAAGGCTATTCTGGCTCGCAGCAAGCTGGAAAGCCTTTGCAGGGAACTACAACGGCACAACAAGACCCTGAAGGAGGAGAACGCCCAGCGGTTCAGAGAATACGAAGAGAGGCGTAAGGAGGCCACACTTCATTTTCAGATGACTCTAAGTGAGATCGAAACACAGATGGAGCAGCACAACACCCACAACACCAAGCTGAGGCAGGAGAACATGGAGCTGGCTGAGAAACTCAAGAAGCTCATTGAGCAGTATGAGCTGCGGGAGGAGCACATTGACAAGGTGTTCAAGCACAAGGAGCTTCAGCAGCAGCTGGTTGATGCAAATCTTCAACGGACGGCTGAGCTGATGAGAGAGGTGGAAGAgaagcagcagagagagagagaacttCTTCTGAAAGATGCAACAGAATCAAGACATAAATGTGAGCTGATGAAGGAACAGGAGCTTCAGTTGAAGCAGCAGCTTACTCTTTACATGGACAAATTTGAAGAGTTTCAGACGACCCTTGCTAAGAGTAATGAAGTGTTCACCTCCTTCAGACAGGAGATGGAGAAGATGACCAAGAAAATCAAGAAGTTAGAGAAGGAGACCACTCTTTGGAGGACCAAATGGGAGACTAACAACCAGACCTTACTGCAGATGGCAGAGGAGAAAACTGTGCGGGACAAACAGTACAAGGCTCTCCAAGGGAAACTGGAGCGTCTGGAGAAGCTGTGCAGAGCCCTGCAGAGGGAACGCAACGATCTGAGCCAGAAACTAGGAGCCCTCCAGGGCCCAGCAAAGGATCCTGAAGAGGAGGGGACGGGACCCCCAGACCCCCAGCCAGAGGAGGCTTTCAGCCCACCTGCGAATGTAGGGATGGATGGAGAGGTAGAGGGAGAAATGGAATGTTTGGCCCCGGAGACAGAGAGGCTGGCGCTGCAACCACAGATTGAGGAGACAACCAGAGAGCATCTTAATGACGACTGAGCCAGGCCCGTTGAGGGacgatttttttttg

Function

GO:

id name namespace
GO:0019905 syntaxin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219446 lncRNA upstream 19445 21002828 ~ 21024560 (+) True G185418
TU219404 lncRNA upstream 76104 20964535 ~ 20967901 (+) True G185381
TU219346 lncRNA upstream 147544 20890247 ~ 20896461 (+) True G185330
TU219189 lncRNA upstream 335978 20705994 ~ 20708027 (+) True G185206
TU219165 lncRNA upstream 475713 20568076 ~ 20568292 (+) True G185182
TU219472 lncRNA downstream 8591 21059064 ~ 21060228 (+) True G185436
TU219486 lncRNA downstream 26702 21077175 ~ 21084699 (+) False G185439
TU219480 lncRNA downstream 28199 21078672 ~ 21084699 (+) False G185439
TU219481 lncRNA downstream 28199 21078672 ~ 21084699 (+) False G185439
TU219482 lncRNA downstream 28199 21078672 ~ 21339714 (+) False G185439
XM_026927592.2 mRNA upstream 7431 21029394 ~ 21036574 (+) False hcn5
XM_026927583.2 mRNA upstream 7431 21030258 ~ 21036574 (+) True hcn5
XM_026920807.2 mRNA upstream 54584 20968735 ~ 20989421 (+) True chrna4b
XM_026920815.2 mRNA upstream 54584 20983032 ~ 20989421 (+) False chrna4b
XM_026912474.2 mRNA upstream 96214 20934989 ~ 20947791 (+) False elovl1b
XM_026930272.2 mRNA downstream 12944 21063417 ~ 21070097 (+) True zrsr2
XM_034308440.1 mRNA downstream 13043 21063516 ~ 21070097 (+) False zrsr2
XM_034308442.1 mRNA downstream 13043 21063516 ~ 21070097 (+) False zrsr2
XM_034308441.1 mRNA downstream 13043 21063516 ~ 21070097 (+) False zrsr2
XM_034308443.1 mRNA downstream 13043 21063516 ~ 21070097 (+) False zrsr2
TU218923 other upstream 893111 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 1172542 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 1209591 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1343731 19695244 ~ 19700274 (+) True rps15
TU218486 other upstream 1490483 19550382 ~ 19553522 (+) False si:ch73-40i7.5
XR_004579103.1 other downstream 139313 21189786 ~ 21210539 (+) False wipf2a
trnap-agg_1 other downstream 908415 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 2882393 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 2883659 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 2884162 23934635 ~ 23934706 (+) True trnaq-uug_3

Expression Profile