RNA id: XM_026915973.2


Basic Information

Item Value
RNA id XM_026915973.2
length 4880
RNA type mRNA
GC content 0.48
exon number 30
gene id phka2
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17648935 ~ 17669132 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCACTGTCAAATTCGTTATTTGGCCTATTGCAAAACGTCTTCACAGGCGTTGTCAAGAAATGGGAAAAGCCGATATGTTGCGGATTGGATATTAATCTGATGCTGGATATTTGCTCTGAGAGCctgaaaaaaagatgacagTGCTTTGTTTAGGGGAGGtgatgcttgattggattgcCTTCATTCCTTGCACTCCTGGCCGTGTGCATTTAGAGGATTATCAGCAATGAAGTAACAGGTCACCTAAAACATATCTGCTCTCCAAAGAGACCGAAGAGAGCTGTAGTTTCTTGGGGCAGTGCTCGGATGATCAGAGCAGACAGAATAAATAATTGAAGATGCGGAGCCGGAGCAATTCAGGAGTGCGACTGGATGCGTTCTCTAGACTCGTCCATGAGACCATCCTGTGCTACCAGAATCCAGTGACAGGTTTGCTCTCGGCCAGTGCACAGCAGAAAGATGCCTGGGTCAGGGACAACGTTTACAGCATCCTGGCAGTGTGGGGTCTGGGAATGGCCTATCGCAAGAATGCGGACCGTGACGAGGATAAGGCCAAGGCCTATGAGCTCGAACAGACTGTGGTCAAGCTGATGCGAGGACTTCTGCAGTGCATGATGAGACAGATGGAAAAGGTGGAgaagtttaaacacacacagagcaccaaGGACTGCCTGCACGCCAAGTACGACACATCCACTTGTGCAACGGTGGTTGGGGACGACCAGTGGGGGCACTTACAGGTAGACGCTACGTCATTGTATCTGCTGATGCTGGCACAGATGACGGCTTCCGGTCTGCGTATCATATCGAACCTGGATGAGGTGGCTTTTATCCAGAACTTGGTGTTCTACATTGAAGCTGCTTATAAAGTCGCTgattATGGCATGTGGGAGAGAGGAGACAAGACCAACCAGGGGATTGCTGAATTAAATGGGAGCTCTATTGGAATGGCAAAGgCTGCTCTGGAGGCCATTGATGAACTTGACCTGTTTGGAGCTCATGGAGGCCCCAAATCCGTGATCCACGTTCTACCCGATGAAGTGGAGCACTGCCAGTCAATCCTGTGCTCCATGCTGCCACGAGCCTCAACATCTAAGGAGATCGATGCTGGTCTGCTCTCGGTTATCTCCTTCCCTGCTTTTGCAGTTGAGGACGCTGACCTGGTCAACATCACTAAGAGCGAGATCATCTCCAAGCTGCAGGGACGTTACGGGTGCTGTCGGTTTATTAGAGATGGCTACAAGACCCCAAAAGAGGATCCTTCTCGGCTTCATTATGACCCAGCAGAACTGAAGCTGTTTGAGAATATTGAATGTGAATGGCCAGTCTTTTGGACTTATCTCATACTGGATGGTGTTTTCAATGGCGATCGTGTACAGGTGCAGGAATACAGAGAGGCTCTGGAGGGTGTCTTGATCCGAGCTAAACACGGCATCCGGCTGATGCCTGAGCTTTACGCTGTACCTGCTGAcaagGTTGAAGATGAGTACAGGAATCCTCACAGTGTGGACCGTGTAGCCACAGGCCAGCTGCCTCACTTATGGGGACAATCTCTCTACATTCTGAGCAGCCTGCTAGAAGAGGGTTTTCTTGCTCCTGGAGAGATAGATCCTCTAAACAGAAGGTTCTCTACTGGCTTCAAACCAGATGTTGTTGtccaagtCAGTGTAGTAGCAGAGACGGAGGAGATCAAGGCACTGCTGAAGTGTAATGGAATTGAGGTGCAGAGTGTGTCTGAAGTCCAGCCCATCCGAATCATGCCAGCTCGTATTCTGAGCCACATCTACGTCAAGCTGGGAAACTGTAGGAAGCTGAATTTGACTGGGCGGCCATATCGACACATTGGTGTTCTTGGGACTTCCAAGTTCTATGAGATCAGGAATCGTACCTACACTTTTACCCCACAGTTCATTGACCAGCATCATTTCTACCTGGCTCTGGATAATCAGATGATAGTGGAGATGCTGAGGACCGAGTTGGCCTACCTCTCTTCCTGTTGGCGGATGACCGGGAGACCCACGCTCACTTTCCCGATTACACAAAGCATGCTGGTGGAGGACGGTGAAAGCATCGACCCTTGCATCCTGTCCACTTTGAGAAAGCTTCAGGGTGGCTATTTTGCAGGCGTGAGAGTTCAGATGGCAAACCTCTCCACATTCCTCACTACCTCCTTCCACACCAAGCTCAGCTTCATGGACGCTGACTCAGAGGAGAACCGTGacgatgaagatgaagatgaagaggatgaCTACAATGAAGATGAAGACGATGAAGGAGGTTCCAAAGATGTTCTGGACCAGTACTTTGCCCACCTCCTGCAGAGCACAGCCACAAAGTCGCAACTCCCTCCCATCCAGAAGGGGCAGCACCATGTTTTCAGCGCTGAGCACACCACCAGGGACATCCTGACCCTCATGGCTCAGGTTCAGGGCCACAACATGCCTAAGGCGTCTATGTATTTACCTGTGGCTCCCATCATGAATAAACACAGGAAGTCTCTAAACCTGCTGGAACTCCCACATCCTCAACACCACACTCCTCAACAACACCACAAGGCTCCTGCTCTAGACCTTCACCTGCCCCATGATGCTCAAGGCAACACAGACTTTGCTGCACTCGTGAATCACCTGAAGGAATGCCCCACATTACAGGACCAGGCTGATATTCTTTATATTCTCTATGCTATGAAAGGTGCGGAGTGGATGGTGAATATATCTGGGCAGAAGGGAGCCACAGTGCGGACTCTGCTTGAGGAGCTCTACATCAAGGCTGGAGCATGTAAAGAGTGGGGACTTATTCGGTACATCTCGGGCATCTTGAAGAAGAAGGTGGAGGTCTTGGCTGAGGCCTGTACTGATCTGATCTCGCATCAAAAGCAGCTGACAGTGGGTCTTCCTCCAGAGCCAAGGGAGAAAGTCAtcactgtTCCTCTCCCACCTGAAGAACTGAATAATTTGATCTATGAGGCCAGCGGTCAGGATATAAGCATTGCGGTACTTACCCAGGAAATCATGGTGTACCTCGCCATGTATGTGCGCTCCCAGCCGAATCTGTTCGGAGACATGCTGCGTCTGAGGATAGGCCTCATCATGCAGGTGATGGCCACCGAGCTTGCTCGTAGTCTCCAGTGCTCAGGTGAGGAGGCATCTGAAGGTTTGATGAACCTCAGTCCATCAGACATGAAAAATCTGCTCCATCACATCTTGAGCGGTAAAGAGTTTGGAGTGGAGAGGAGCGTGCATCCCACTGAGTCCAGGACCACCAGTCCAGCCATATCCATCCATGAGCTCGGACACACAGGAGCCACCAAAACAGAACGCACAGGCATCAGGAAGCTGAAGTGTGAAATCAAACAGAGGTGTAGCAGTCCGTCGACCCCCAGTGGTGTCATGTCACCTACAGGTACGGGAGACCCACGCCTGCAGTGGGAAGAGCGCCAGGGGCAGTGGCTGAGGAGACGCCGCCTGGATGGCGCTATTAATCGAGTGCCCATGGGCTTCTACCAGAAAGTGTGGAAGATCCTGCAGAAATGCCACGGCCTCTCAATCGCAGGATACGTGCTGCCCTCCTCTACCACCCGTGAGaTGACAGAGGGAGAGATCAAGTTTGCTGTGCATGTGGAGTCTGTGCTGAACCACGTTCCTCAGCCTGAGTACCGGCAGCTGCTGGTGGAGGCCATCATGGTGCTCACCCTGGTGGCTGATATGGAGATCCCCAGCATCGGTGGAATTATTTACATCGACCGAATTGTTCAGATGGCGAATGAACTCTTCTTGCAGGACCAGAAATCTAGCGGGGCCAATGAGTTTTTCCTGGAGAAAGATCCTGCCACAGGAATCTGCAACTTCTTCTATGACAGCGCCCCCAGTGGCAGCTACGGCTCTATGACCTATCTGTCCAAAGCCGTGGTCACGTATGTTCACGACTTCCTCCCCAGTGGCAGCTGTCTGATGCAGTGAGAAGAGCTGCTTCAGGAACCCCACCCTTGACCTGGGATCAGTGAATTGACCAGCAGTCCTGCCTTTCACAGCTGTGGTTTCAGATCAGCAGGAGAGAGGCAGTCTGAGTGGTGAATATTCCTAAAGAGCAAGAAGTAGATCACTTTAGACTACTGTGAAGCTAATTTTACAAAGTTTATCTATGTTATTAAATAGCGTGCACTGTTATATAATatggtatttatttttaaattgctagtctacataaattaattacttttaatttaaatatttaataatttatcatttttttcaagAATTCCACAATTTCAGCAAACATAAGCAGCGACCAGTAAACCATAATATTATGGTGAAAACATATAATACTTCCATGTATATTTTCTGTTGTATTGCTCTCTTTATGGTTATTAATGCATGTACCTAATGTTTGTTTTAGCACTTATTGCTCATGAATACACTGTGTTAATGTAAAACTGAATAACGTTACAACATAGCTTTGTAGCAGACTGATATCTTTTGATGTATTACACCAATGAAAATAGTAGAGTTTAATTTACCTGTTATGTAAGTACTGTATTTGGGGCATGTTTACATGAATATGTTACACTGAGATGAATATAAAACCAGATATGAATATGTGCTGTACATCATTTACTAGCATGCAGTATTTCCTGAATTGGAGAAGGAATGGAATTTGATGTTGAGAGATACAAGGAAcaatatgttattttttcctTCCTAGAAAATTACATGTTTATGTAAACTCAGTCATTTAGGCACAAGaggaaactgtttttttttttttcatctatacTGTACATTTGCTTCTCTGCTCTCACTGGAAGAATTCACAGCTTCATTTCTCATGTCTGTTAAGTCATAGTTTAGTGGTTATATTTAATAGACCAACATTTCACTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216676 lncRNA upstream 65150 17577642 ~ 17583785 (+) False G183058
TU216673 lncRNA upstream 68821 17577740 ~ 17580114 (+) True G183058
TU216632 lncRNA upstream 198199 17450457 ~ 17450736 (+) True G183032
XR_004579106.1 lncRNA upstream 225615 17416730 ~ 17423320 (+) True LOC113535983
TU217213 lncRNA downstream 55631 17724763 ~ 17725260 (+) True G183478
TU217332 lncRNA downstream 218995 17888127 ~ 17888353 (+) True G183566
TU217344 lncRNA downstream 233653 17902785 ~ 17902984 (+) True G183578
TU217351 lncRNA downstream 246871 17916003 ~ 17916210 (+) True G183585
TU217463 lncRNA downstream 497490 18166622 ~ 18237120 (+) False LOC113526284
XM_026927180.2 mRNA upstream 3823 17638789 ~ 17645112 (+) True senp5
XM_026927190.2 mRNA upstream 3823 17638789 ~ 17645112 (+) False senp5
XM_026929958.2 mRNA upstream 12540 17598464 ~ 17636395 (+) False anos1b
XM_034309006.1 mRNA upstream 12540 17598464 ~ 17636395 (+) False anos1b
XM_026931656.2 mRNA upstream 103868 17534444 ~ 17545067 (+) True cp
XM_026924621.2 mRNA downstream 3039 17672171 ~ 17751502 (+) False mcf2l2
XM_034308486.1 mRNA downstream 3039 17672171 ~ 17751502 (+) False mcf2l2
XM_034308483.1 mRNA downstream 3039 17672171 ~ 17751502 (+) False mcf2l2
XM_034308484.1 mRNA downstream 3039 17672171 ~ 17751502 (+) False mcf2l2
XM_034308485.1 mRNA downstream 3039 17672171 ~ 17751502 (+) False mcf2l2
XR_004579126.1 other upstream 12540 17598464 ~ 17636395 (+) True anos1b
TU216628 other upstream 203876 17439796 ~ 17445059 (+) False LOC113536271
XR_003402991.2 other upstream 433052 17196280 ~ 17215883 (+) False LOC113528769
trnak-cuu_26 other upstream 618991 17029872 ~ 17029944 (+) True trnak-cuu_26
TU216450 other upstream 726013 16913258 ~ 16922922 (+) True G182877
XR_004579060.1 other downstream 3039 17672171 ~ 17751502 (+) True mcf2l2
XR_003403373.2 other downstream 3039 17672171 ~ 17749291 (+) False mcf2l2
TU217273 other downstream 104581 17773713 ~ 17781813 (+) False ect2
TU217312 other downstream 126313 17795445 ~ 17796619 (+) True G183549
TU218227 other downstream 1585825 19254957 ~ 19269222 (+) False adgrl4

Expression Profile