RNA id: XM_034308636.1


Basic Information

Item Value
RNA id XM_034308636.1
length 9486
RNA type mRNA
GC content 0.46
exon number 44
gene id unc13a
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16606126 ~ 16650115 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTGAACAAGATGGCTGTGCGGCGGGTTACGAGAGGCTGACAAGACGAAAAATTCACCGTTTTTCCCAGCAGAGCAGTGAGCTCTTATGTAGGAACGACACTCTAGACAGTCGACTTTAACACTGTAACTAGTTCCTCGTGTTATATTTGTTTGGTGAGCTCTTATTTCGATCCGAAACAGGGCGGTCTCTCCAATCTCGGCGTCTCTAATCTCTGATTTAACGCGTAAAAGCGTTCAATATCCTTCTGTGTCTGTAAAGCAGCAAAACAGCCAACATAGATTATAAACCACTGAAAGAGatgtcactgctgtgtgttGGAGTGAAAAAAGCAAAGCTAGATGGACCGCAAGagaaGTTCAACACCTATGTGACACTTAAGGTGCAGAATGTGAAGAGCACCACTATTGCTGTGCGAGGCAGTCAGCCATGTTGGGAACAGGACTTCATGTTtgAGATTAACAGGCTGGATCTGGGCCTGACTGTGGAGGTCTGGAACAAAGGCTTGATCTGGGACACCATGGTGGGCACGCTGTGGATCCCTTTAAGCAGCATTCGCCAGTCCAATGAGGAAGGGCCGGGGCAGTGGATGACTTTAGACTCCCAGGTCATCATGGCAGAAAATGAGATCTGTGGCACCAAAGATCCAACTTTCCACCGCTTGCTTCTGGACACACGCTTTGAGCTGCCTTTAGACATTCCAGAGGAGGAGGCTCGCTACTGGGCCAAAAAACTGGAGCAGCTAAATGCCATGAGGGACCAAGATTATTCATATCAGGAGGAGCATGAGAGACCACTTCCAGTGCCATCAACACAGTGCTGTAATTGGAGTCTGTGGGGAGACCAACAAAATGATGATCCAGACAGTGCAGTGGACGATAGAGACAGCGATTACCGCAGTGAGACGAGCAACAGCATCCCTCCTCCCTATTACACCACATCCCAGCCCAACGCCTCCATGCACCAGTACCCCATTCGCCATATGCACCGCGGCTCCCACTATGATGACATGCAAGACTATGACTATGATAACCAGAGAGCTATGAGACGCTATGATAGTTTAGACTCCGCCACCAACGGCCGCAGTGATCTCGATTCGGCCTCCGGCTCGAGCAGGCGGACCAGCCGCCAGTACTCCTTAGACAGTAGGCGCTCACTCTCTGATAGTCCCACTGGGTCCAGTCGATACGCTTCATCAGGTGAGCTGAGCCGTGGTAGCTCACAGCTCAGTGAGGATGGCGAGAGCTTCCGTGGCTCCGGAGAGTTCTACGATGAGAACGACTCCTACCACTCATGCCACTCCTCAGTCAGCTACGGGAAAGAGTCACCTGGCTGGGACCACGACGAGCCCCAAGGAGTCTACAGCGACGAAGGTAGCTACGTCAAAGATGGCGGAGAGGAAGGTGCGCTgtatgaggatgaggatggtgACTTGTACGAGCAGGAGGAAGGGGATTACCCATACGAGGAGGAAGAGGGAATGGGctttgaggaggatgaggagttGTATCCTCTGGATGGCACACTTAGTGAGGAGCAGGAGCCCCCATATACACCCACCCCAACCAGTGTGGCTCCCTCGTTAGCTCGGGAGACCTCCAGCTTCAGTCGACCACCTTTGGAGAAGCAGACATCGCTGCACCAGCATCAGCCCCCACAGGCCGAACCTCAGTTCCGGCCCACAGATTCTCTCACAGAGGCTGTGCCAAAGCAGCAGAGCTTTGATGACTTCAGCAAACCTGCCAAATCCACCGCACCTACCTCTGATCTGGAGCCCCTTGGTCCCACAGCACCGTCACTCACACCTGCAGCAAAACCTGTTGGAGTTACAGAGGAGCTGAAGCCTCCGGTTGAGCCTCCAGTCTCTGAGCACCCATCTGAAGCCCTGCCCGAGAAAACGGAAGCACCTCCAGAAAGTGTGGCAAAGCGAGATGAGGTAGTGGATCCTGCTGAACGTGCCAAGGCCAACTGGCTGCGACTCTTCAACAGGGTTCGGCTTCAACTGCAGGAGGCCCGAGGCGAGACTCCTGGACTGGCATCACTGTTTCTACAAGCAGGGCCTGGAGGAGCTCTGTACACCATAGACAGTATGCCAGACTTGCGTAAACGCAAGGCCATTCCTCTGGTTCGTGATTTGGCAATGTCCCTCGTCCAGAACTCTCGGAAGGCTGGAATCACCTCGGCTATGGCCTCCAGCACTCTCAACAATGAGGAACTGAAGAGTCATGTGTATAAGAAGACCCTCCAGGCTCTGATCTACCCCATTTCCTGCACTACTCCCCATAACTTTGAGGTGTGGACGGCCACTACACCAACATACTGCTACGAGTGTGAGGGGCTGTTGTGGGGTATTGCCCGACAGGGTATGCGTTGTACTGAGTGCGGTGTCAAATGCCATGAGAAGTGCCAAGACCTGCTCAACGCTGACTGTTTACAGAGAGCTGCGGAGAAGAGCTCTAAGCACGGTGCAGAGGATCGGACTCAGAACATTATCATGGTTCTAAAGGATCGCATGAAAATCCGCGAGAGAAACAAGCCAGAGATCTTTGAACTCATCCAGGATGTGTTTGGAGTCCCCAAAACCACTCATGTCACCCAGATGAAGCAGGTCAAGCAAAGTGTCTTGGATGGAACCTCCAAGTGGTCAGCCAAGATCAGCATCACAGTTCTGTGTGCCCAGGGCCTGCAGGCCAAGGACAAAACTGGCTCCAGCGATCCCTATGTAACAGTGCAAGTGGGGAAAACCAAGAAGAGGACCAAGACCATCTACGGCAACCTCAATCCTGTCTGGGATGAGTCCTTCAATTTtgagTGCCACAACTCTTCAGACCGGATAAAGGTGCGAGTGTGGGATGAGGACGATGACATCAAATCACGTGTTAAGCAGAAGTTCAAGCGAGAGTCAGACGACTTCCTGGGGCAGACTATCATCGAGGTGCGGACACTGAGCGGAGAAATGGATGTGTGGTACAACCTCGACAAGCGTACGGACAAGTCTGCTGTGTCAGGAGCTATCCGAATGCACATCAGTGTGGAGATCAAGGGAGAGGAAACAGTGGCCCCTTATCATGTCCAGTACACCTGCCTACATGAGAACCTCTTCCACTATGTGACAGATCTTCAGAACAACGGTGTGGTGAAGATCCCAGATGCTAAAGGTGACGATGCCTGGAAGGTCTACTTCGAAGAGACACCTCAGGAGATTGTGGATGAGTTTGCTATGCGTTATGGAGTGGAATCTATATATCAAGCCATGACacaCTTTGCCTGTCTATCATCTAAGTACATGTGCCCGGGAGTGCCAGCAGTGATGAGCACTCTGCTGGCTAACATCAATGCATACTACGCCCACACCACCCAGGCTACCAATAATGTCTCTGCTTCCGACCGCTTCGCTGCATCCAACTTTGGGAAAGAACGCTTTGTAAAACTCCTGGACCAACTACACAACTCTTTGAGGATTGACCTCTCCATGTACAGGAATAATTTCCCAGCCAGCAGTCCTGAGAGGCTGCAGGATCTCAAATCCACTGTGGACCTACTCACCAGTATCACTTTCTTCAGAATGAAGGTCCAAGAGCTACAAAGTCCTCCTCGTGCCAGTCAGGTTGTGAAAGACTGTGTGAAGGCCTGCCTGAACTCCACATATGAATACATCTTCAACAACTGCCATGAGCTGTACAGCCGCGAGTACCAGACTGACCCGTCAAAGAAAGGTGAGGTTCCTCCCGAAGAACAGGGTCCAAGCATCAAGAACCTTGACTTCTGGTCCAAACTGATCACCCTAATCGTGTCTATCATTGAGGAAGATAAGAACTCCTACACTCCTTGCCTTAACCAGTTTCCACAGGAACTGAATGTAGGGAAGATCAGCGCAGAGGTCATGTGGAATCTGTTCGCCCAGGATATGAAGTATGCCATGGAAGAGCATGAAAAGAACCGCCTCTGTAAGAGTGCTGATTACATGAATCTGCACTTCAAAGTGAAATGGCTTTACAATGAGTACTGCAAAGACCTGCCTTTCTTCAAGAGCAGAGTACCAGAGTACCCAGCGTGGTTTGAACCTTTTGTAATCCAGTGGCTGGATGAGAATGAGGAGGTTTCTCGAGACTTTCTGCATGGAGCTCTGGAAAGGGACAAAAAAGATGGATACCAGCAGACATCAGAACATGCACTTTTTTCCTGCTCAGTGGTCGATGTCTTTTCCCAGCTCAACCAGAGctttgaaattattaaaaagctgGAGTGCCCCGACCCACAGATTGTGGGCCACTACATGAAGCGATTTGCTAAGACAATAAGCAACGTTCTGCTCTCCTATGCCAGCATAATTTCCAGAGACTTCCCTAACCATTGCACCAAAGAGAAAGtgAATGCTAAAGATGGTGCTATAAAGCCCTGTATTCTGATTAACAACATTCAGCAACTCCGGGTACAGCTGGAGAAGATGTTTGAGGCCATGGGGGGCAAGGATCTGAATGTTGAGGCTAGCGATATCCTAAAGGAGCTGCAGGTAAAGCTCAACAATGTTCTGGATGACCTGGCCAGGATCTTTGCCACCAGtttccagCCCAACATTGAGGAGAATGTGAAGCAGATGGGAGACATTCTGAGCCAAGTGAAAGGCACAGGCAATGTGCCAGCTAGCGCCTGCAGCAGCGTGGCTCAGGACGCAGACAACGTACTGCAGCCCATCATGGACTTCCTGGACAGCAACTTGTCACTGTTTGCTAAGATATGTGAGAAGACAGTTCTGAAGCGGGTGCTGAAGGAGCTCTGGAAACTTGTCATGAACACCATGGAGAAGACCATCGTTCTGCCTCCTCTAACTGATCAAACGGGTACACAGCTAATTTTCAATGCTGCTAAGGAGCTCGGCCAGCTTTCCAAGCTGAAGGAGCACATGGTGCGTGAGGAGGCCAAGGCCTTATCACCCAAGCAGTGTGCAGTTATTGAGTTGGCCCTGGATACCATCAAGCAATATTTCCATGCTGGAGGAGTGGGCCTAAAGAAGACCTTTCTGGAGAAGAGTCCTGACCTGCAGTCTCTCCATTATGCCCTGTCTCTCTACACACAAGCCACAGACAAGCTCATCAAAACCTTTGTCCAGTCACAGAATGCACAGGTTCATGGAGGGAAGGGGATAAGGTTCACCCATAGCGAGGATGTGTACCCCGAAAAGGGCTCTGGGGTGGATGATGCCGTGGGAGAGGTGTCCATCCACGTTGAGATCTTCACTCATCCCAACACAGGCGAACACAAGGTCACAGTAAAAGTGGTTGCAGCAAATGACCTGAGGTGGCAGACGTCTGGAATATTCCGACCCTTCGTGGAGGTCTACATCATCGGCCCCCACCTGAGTGACAAGAAGAGGAAGTATGCCACTAAATCAAAGAACAACAGCTGGGCTCCCAAATACAATGAAACATTCACATTCACACTGAGTAACGAGGTGGGGCCGGAGTGTTATgagctgcaggtgtgtgtgaaggacTACTGCTTTGCGCGGGAGGACCGCACTGTGGGCATGGCCGTGCTGCAGCTGAAGGATGTTGCGCCACGGGGTAGTGTGGCCTGCTGGCTCCCGCTCGCCAAACGCATCCACATGGATGAGACGGGCCTGACCGTGTTGCGCATTCTCTCACAGCGCAACAACGATGATGTGGCCAAAGAGTTTGTCAAGCTCAAGTCTGACCAGCGCTCAGCTGAGGAAGGCCGAGGGAGCTAAAGGTATTAATGAAGGAATTGTGGATTTGCAAAATAACTGCCCACCTCCTTTTTCTGTTGAGTGTTGCACTAAAACAGACAGCCAATACACAcgcgcgcatacacacacacacacacacacacactctgcagatCTGATTATTCTGGACCAATCACACAACATAGTGATACCTAAGACACTGCCAAAACCTGCTATGAGGCTTGTCTGACAAGCACAGTGCAGCACATAAAAAGATACAGGTACAAAAGCTTGTATCTCTATAATACTTGGTGTTTGTGGTGTCCTTGATTTTCAAAAGTACATATTATATGACACAACCTCATGGTTGAAAGAtatttaaagaacaacatatttATCTAGTTATtcacacataaaatatataaaaattgcaaatattctttcaataatatatataaaagagaTAATATTGTCTGTCATATTGAAAGATGTCTAAATGGATCCTTTTTTTGGAAACAGTACAGAGCAGAGATATGCCTGAGTGAAAGCAGGGTTGCTATATGTAGTGCCATTGATGCCTCCCAAAGCCCTAATACCCCAACTCCCTTATTTAATATATGATAATGATGTCTGTGGAAAGCTTGTCTGTAACTGCCTTGTTCATTTTTTCAATCATTCCTGCACCTCCACATGGGTGTCTCAGTGTCAGGGtatttctcttttgttctcAGCGAGATGTCTACTTCTGCTACTTCTGAAAGGTACACTGTTTAATGGGGccaatgtttttgaaaattatgCAAACCTTTAGATCAAGCACAAGAACATTATTATAAAGTGAAACCATAGCTTGCAGTGCAAGTAGCTTGGACCAAATACATCTCACAAAGCAAAGGATCAACATTTCTTTGACAATTCTTTACATCCCATGGGGAATGGTATGAATTTGGAGAAAGCAATGACTCGGTGGCTCACATTAATTTAAGCATTTGTTTAATGTGCTGTAtgagtttatttaaattatcaTCGAGGTTTAACTCTGTTGTATATGTTTTATCTGCAGTGCTAATGTAGGCAAACAGTAAATGAAGGCTATGGGAGCTAAAGTTAAGAAGGTTTTGCGTAAtaccactactactgctactattagCCCCTAATCCTTTGATTTactgttagcaatgttggcatgTTTGggtgaagtattcctttaaacaCACTGCCAATCCTCTCTTATGTCCAATTTTTGGGGTTTTATATCAGTTTCtttgtgtgtgagcatgtgtgccTTGCATGTGTGGTGTATAAAGTGAGTGCATGACTGAGACTTTATAAATAAGAAGGCATTGTGAAGTGTGGGTCAGGTGCAAATGTAGTGAACATGAGATTTAAAAAGGACCTTAAATGACTTACTGACTCATTTGCGTTGTTTACTTTTATAAAGTAGCATCTGTTTTACATAATTTCCCTCATAAGAGACACAGTAGCAAAAAAAACTATCTTCAGTTCAGAATAATTGCAGTGCTGTTGCCATAGCAACCACCATTGTCTTGCCACCCATCTAAGTGTTAGGAAAGCACAAAGTGAATGTAGACTCTGTGCTTGTTTAACCTGATAAATATATCCCTGCATTGATCCTACCCCTTCATTTCCAGCCATTGAGCAGTCAGTGCTGGGAATGTAGCTATTCAACCCTCTAGTGTTCTGCAGTGTTTTACAGAACACAGTGGAGGTCAGAGATAATGACTGGTTTATCTTCAGGAGGGATGAGACCTGGTGAGTGGTGGTAGAGCTTCACATTTAACCACCCAGCATGAAATATCTCACTTGTATGTGTTGGACATCTGGCACAAGAAACATTAGCTATGTCTGAAATGGCGTAGTTTTATTGCGAGTGTGGTCACAGTGGGAAAATCACCACATGAAATGTACTATTAATTCCCAGATAATTTactaaaaccaacaaaaaacaaaagttttgacTGTTTTTCAACTTTTTGCACTAAACGTTCACAGCCTGCTGTATGTAGGGGAGGGAGGCACCAGAATGTGCTGTGATTTATATTTCACTGAAAGGCTGAGACACAGAGTGAGAACACTGCTTTAAACCAaacattttgggtttttttgctCCTCTGGCACAGTTCAGTGCAATTTCGGTTACCCTAAAAAATTATCTACTACATAGGGAGGTACATGgtgtatagtatataatatatagtgcATAGAATGctatttgagacacagctaTTATCAGGAGAGAAAACAGTTCACTCAGTGGCCATCTTGGCAATGCCTCCAGGTATTAATATCTGAATGTTGAGAGACCTATAAACCCACAACTGACAGCCAAGCAGTCATTtcaaacaattatttaaaatctttgtTGAAATCCGACTAAAAAGgcataataataacaccaacCTTCTGTATGATTTTCTGTGTTAGCTGTGATTGTCAGACCAAAGGTTAATGAATGCCGCCCTACTTTCTGCACACATAATGACTTCTACACCCTACAGCCTATGTAGTTCACTATATGTGCAACAGGAAGCCATACAGGATTCACCTTGAGCTAGGTTTGCTAGCTGTAGAGGTAAGTAGGAATCTAAACTAAGGCTAATGATGTATTCGCTAATGTAGTAGGAAGCATGCTGGCTTTAGATGGActatgtaattaaataaagagCTTATGTGTAGCTGCTCTGCAGCTAAACCACAATAAACCGTACGTTGTATCGTCATATCTAGTTGACAAGTTAAGAGTTGCGAAGTCTGACCTGTTTTGAACTGTCACAAAGACAGCAGTATCCTAATTGTGTGCTTGCATCAGTGTAAGAATATGATAAATCTGACTTATTCCCTGACTTATTCCAACTTTGGCTTTAATAATTGATTGGGACTTCCCATAATACAGCCATGGGTTGTTTTGACCAGTGAACTGTCGCCTCACTTTATAATGTCTCTGGAGGAACCTTCTAGAAAGCACTGCCAAGCAGAGAAAACATAGCCAATTTAAATTAGttattttaaacaaactccCCAAAATGACCTTTACAACTAACAGTTTCCAAGTGTCAAATCATGTCAAATCACTAGACTTAGTCTATGCATTAAAGTTTTAGGtaacaattttttattgtttacattgtGGATTATCTACACAAAacatgatgttgatgatgatgtcactgttcTTATATCCTAATTAGGATACAGTAAGTGTACAATAAGTTACAGCCACAATTTTATTCCTGAATGATTTGAAACAAGTCTGTTTTAAGGTTGAAAAATTTGCAGACTGCAGGACCAGTGAATGCTGCACAGATGTTGTGAGAGGCTctgaagctgtgtgtgagaTGCCAAAGTGGCTGTCAATAAGAACTAAGTAGAAGCATAAGTGGGAGCATGTAAACAAAGCACATGGAGATCATGCTttcatgctcacacacacacacacacacacacacacactgcactgatgtCTGACCTCACCCAAACCATGACTCCAGAGCTGTAGATAGGAAGCAGTGCATGTTGGAAAAGATCTCTCTTGTGCCAGCATGTGTCTTTGAtgtgattttcaaaatgttgtctttttgttatttattttgatatttggtattattttctatttttggaAGGCttgtgaatatataaatatgtattactGATGTGTAGTGACACAGAGTTCTAGCATGAGAGactttttttatacacagatgtttataatttctgtttttctaaCTATTATTGTTCTTATTGGGGATGAAAGTGAAACTAATAGCATTTTGCTGTGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215985 lncRNA upstream 345810 16260058 ~ 16260316 (+) True G182483
TU215642 lncRNA upstream 596891 16006054 ~ 16009235 (+) True G182190
TU215562 lncRNA upstream 615716 15988630 ~ 15990410 (+) True G182116
TU215560 lncRNA upstream 618145 15938100 ~ 15987981 (+) True G182115
TU215618 lncRNA upstream 712599 15893292 ~ 15893527 (+) True G182167
XR_004579080.1 lncRNA downstream 58510 16708625 ~ 16720748 (+) False LOC117598408
TU216395 lncRNA downstream 63598 16713713 ~ 16725527 (+) True LOC117598408
XR_004579047.1 lncRNA downstream 202293 16852408 ~ 16857137 (+) True LOC117598387
TU216484 lncRNA downstream 310544 16960659 ~ 16961299 (+) True G182906
TU216493 lncRNA downstream 339204 16989319 ~ 16989519 (+) True G182910
XM_026929196.2 mRNA upstream 3364 16597960 ~ 16602762 (+) True hmg20b
XM_026929269.2 mRNA upstream 3364 16597960 ~ 16602762 (+) False hmg20b
XM_026942858.2 mRNA upstream 23343 16577534 ~ 16582783 (+) True LOC113544157
XM_026930811.2 mRNA upstream 277537 16322156 ~ 16328589 (+) True rgmd
XM_026927435.2 mRNA upstream 320846 16279979 ~ 16285280 (+) True hsd11b1la
XM_026914053.2 mRNA downstream 124343 16774458 ~ 16786199 (+) True chaf1a
XM_026928360.2 mRNA downstream 151689 16801804 ~ 16814246 (+) True hdgfl2
XM_026916547.2 mRNA downstream 164493 16814608 ~ 16847204 (+) True ap3d1
XM_026916555.2 mRNA downstream 164493 16814608 ~ 16847204 (+) False ap3d1
XM_026916562.2 mRNA downstream 176546 16826661 ~ 16847204 (+) False ap3d1
TU216336 other upstream 21183 16583303 ~ 16584943 (+) True G182819
XR_003403746.1 other upstream 25823 16580236 ~ 16580303 (+) True LOC113537281
TU215983 other upstream 350274 16255063 ~ 16255852 (+) False LOC113532318
XR_004579090.1 other upstream 1894399 14708927 ~ 14711727 (+) False pdzk1ip1
XR_004579085.1 other upstream 1959304 14622543 ~ 14646822 (+) True si:dkey-121a11.3
TU216450 other downstream 263143 16913258 ~ 16922922 (+) True G182877
trnak-cuu_26 other downstream 379757 17029872 ~ 17029944 (+) True trnak-cuu_26
XR_003402991.2 other downstream 546165 17196280 ~ 17215883 (+) False LOC113528769
TU216628 other downstream 789681 17439796 ~ 17445059 (+) False LOC113536271
XR_004579126.1 other downstream 948349 17598464 ~ 17636395 (+) True anos1b

Expression Profile