RNA id: XM_026916468.2


Basic Information

Item Value
RNA id XM_026916468.2
length 3355
RNA type mRNA
GC content 0.54
exon number 20
gene id tle2b
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17000105 ~ 17066956 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTACAGTCTAGGGCTCGCTGCTGAAAAGCCTGCTGGATCTTCCAGTGACCTGCTGTTCTTTCCTgctttcctgtgttttttttctctccctctccctcctctagatttagattaaaaacaaagcTCTCTCTCCCATCCTTGTTGCTTTGACTCTCTCCCCTTTTCTTTTACACTCTCAGTCtggctggggaaaaaaaaatccctttagtttgtctctctgtgttaCAAGAGGAAGTCGCTTGGCTCGATTCggatggaggtgtgtgtttgtttttggacCTTGCTGGTGTGCTTTGAGGAAGGACAGAGAAGGGACAGTTGGATGTGACTGCAGCTTCATCAGAGCAGTAAGACTCATCGGAGCAGGAGAGAGGAGGACAGCTGAGAGTGTGACTTTGACTCCTCTGAGGAGGAAAGGTGGAGAAAAAGTCAGCAGTTGGAGTTTCTGGAATTAATTTTGCATCAGCCCTTGTTGGATGCGCTGAGTTTGTCCAGACTCGGAGGCTGAAGCCGGGTTCCCAACTCTGGATCCTGGGCTCCATCCCTGCTAAACCCTCTACCTCTCCTTTCCAGGAGTGCAAAGACCTGAAGGAGCCCACTATCCATCAGACTCCTAACGAGCGTCACTGCACTGACCATGTACCCACAGGGTAGACACCCGgtTCCACTGCAGCCTGGCCAGTCCTTCAAGTTCACTGTGCTGGAGACGCTGGACCGGATTAAAGAGGAGTTCCAGTTCCTCCAGGCCCAGTATCACAGTCTGAAGCTGGAGTGTGAGAAGCTGGCCAGTGAGAAGACCGAGATGCAGAGGCACTACATCATGTACTATGAGATGTCCTACGGACTTAACATAGAGATGCACAAacagGCGGAGATTGTAAAGCGGCTCAGCGCTATCTGTGCTCAGATCATCCCTTTCCTCTCTCAGGAGCACCAGCAGCAGGTGGTGCAGGCTGTGGAGCGGGCTAAGCAGGTCACCATGGCAGAACTCAACGCCATCATTGGGcagcagctccagcaCCTGTCTCACCACACCCCAGGCATCCCGCTAACCCCCCACCCATCAGGCCTGGCACTGGGGGGAGCCTCGGGCCTGTTGGCTCTGACTGGGGCGCTCGGCGTCTCTGCTCACCTGAGCAGCAAGGATGAACGCAACCACCTGGATGCCGAGCATCTTCGAGAGGGTGCACCCAGCAGGaGTAAGTCTGTGTCATCAACAGACAGTCAAGCGATAGAGGAGCGTCAGGGCCCCTCAGGAGTCTTCCCCTCTCACACCAGCAATGACGCCAAGAGGAGGCGCTGTGATGATAAAGATGGCCCATCACATTATgACAGTGATGGGGACAAGAGTGAAGACAACCTAGTGGTAGATGTCTCTAATGAGGACCCTTCCTCTCCCGTGGGCAGCACCCCCCACTCTCCTCATGGAAACGGCTTAGACAGAGCACCTACGCTGAGGAAGGAGCTCCCCAGATCCCCAAGTCTCCCTCCCGCCCCCTCACCTCCAGATCACAGCCCTGCTCCAGGCAAGGGCAAGGACCCAGCACAGTCAGAGAAATGTCAGTCACCATCTTCTAAGTCAGGCAGTAGCTCCCCCTCGCACCGCGAGGCCCTCACCCCTGGACCCAGCACTTCCTGTCTACGGCTAGTCACTAAGCCTGTGTCCTCAGCAGATCCTATGGcagctTTGCGCAGTCCTCTGTCAATGACATCAGCTTCTTACCCAGCTCATTTTGGTGTCGTGTCTCATGCCGGACTGAATGGAGAGCTGGCCAGTCCAGGCAGCTTTGGTGGCTCAATCACTCTCTCACCCCAGATCAGTACTGCAGCTAGTGCCTACACACGCAGCCCCAtgGTGGCTTATGAATCACGCTCTCACCTCAGGCCCTCAGGGCTGTCCTCCTCTCTGCCTGGCTCCAGTGGGGGCAAGCCTGCGTACTCGTTCCATGTGAGTGCAGATGGACAGATGCAGCCTGTACCCTTCCCTCCTGATGCTCTCCTGGGCCCGGGCATCCCTCGCCACGCCCGCCAGATCCACACACTCAGCCATGGAGAGGTGGTGTGTGCCGTCACCATCAGCACCTCCACACGCCACGTCTACACTGGCGGCAAAGGCTGTGTCAAAGTGTGGGACATCAGCCAGCCGGGCAGCAAGAGCCCCATGGCCCAACTCGACTGTCTGAACAGGGACAACTACATCCGCTCATGCAAGCTCCTCCCAGATGGGAGAACTTTGATAGTTGGAGGTGAAGCCAGCACTCTGTCCATCTGGGACTTGGCCACGCCCACTCCACGCATCAAGGCGGAGTTGACCTCCTCGGCTCCGGCGTGCTACGCGCTGGCCATCAGTCCAGACAACAAGGTCTGTTTCTCCTGCTGCAGCGACGGCAACATCGTCGTGTGGGACCTTCACAACCAGACACTCGTCAGGCAGTTCCAGGGCCACACTGATGGAGCCAGCTGCATCGACATCTCCAACGACGGGACCAAACTGTGGACTGGGGGACTCGACAACACGGTGCGCTGCTGGGACCTGAGAGAGGGCCGCCAGCTCCAGCAGCACGACTTCACCTCCCAGatATTCTCTCTGGGCTACTGTCCTACAGGAGAGTGGCTGGCAGTGGGCATGGAGAGCAGTAATGTGGAAGTATTGCATGTCTCCAAACCAGACAAGTACCAGCTGCACCTTCACGAGAGCTGTGTGCTGTCACTCAAGTTCGCCTACTGTGgTAAATGGTTTGTGAGCACAGGAAAAGACAATCTGTTAAACGCATGGAGAACGCCGTATGGAGCAAGCATCTTCCAGtccAAGGAGTCCTCATCCGTCCTGAGCTGCGACGTCTCACCAGATGATAAGTATATAGTCACTGGCTCTGGAGATAAGAAAGCTACTGTGTACGAGGTGGTCTACTGAGCACATGAGAGAGGAgcgagatggatggatggatgcatggatggataaAATGGAAGAAATTATGAGCTGAAAGAAAAGCACTTACCAGGAGCTCATTCATGGCAGCTGTGGTGGGCAACCATGGGTGCTCTTTCCAAACAGTATTCCCCTCCATCGTCTCTCAAGTACCATTAAACCCCATCCCCATCCCCATTCCATCCCCCTATaagcaggaaagagagagaagatagagagggataaacagaaagaataaaCAGAGGGAGTATAATTAGCACAGTGTCTAGATGAAACGCCCAGCGGCGAGGAGAAAGCTCACAGGAGAAGAGGTAAGCACTTAGGGAGCTGcagctcacacaaacacagatagcAGACAATCAATAcattcctgtaaaaaaaaaaactcacactgTAATGAGCCCAAATGCAACAGAGCTCGTTACA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216493 lncRNA upstream 14179 16989319 ~ 16989519 (+) True G182910
TU216484 lncRNA upstream 42399 16960659 ~ 16961299 (+) True G182906
XR_004579047.1 lncRNA upstream 146561 16852408 ~ 16857137 (+) True LOC117598387
TU216395 lncRNA upstream 278171 16713713 ~ 16725527 (+) True LOC117598408
XR_004579080.1 lncRNA upstream 282950 16708625 ~ 16720748 (+) False LOC117598408
TU216515 lncRNA downstream 12681 17079637 ~ 17083529 (+) True G182932
TU216521 lncRNA downstream 54957 17121913 ~ 17134999 (+) False si:ch211-126j24.1
TU216605 lncRNA downstream 341589 17408545 ~ 17411425 (+) False kcnh1b
XR_004579106.1 lncRNA downstream 349774 17416730 ~ 17423320 (+) True LOC113535983
XR_003403652.2 lncRNA downstream 349774 17416730 ~ 17423320 (+) False LOC113535983
XM_026919098.2 mRNA upstream 28121 16949748 ~ 16975577 (+) True tle5
XM_026919107.2 mRNA upstream 28121 16949759 ~ 16975577 (+) False tle5
XM_026916010.2 mRNA upstream 56240 16912572 ~ 16947458 (+) True LOC113527868
XM_026923600.2 mRNA upstream 141549 16858927 ~ 16862149 (+) True LOC113532286
XM_026916023.2 mRNA downstream 54943 17121899 ~ 17189315 (+) True si:ch211-126j24.1
XM_026916031.2 mRNA downstream 54944 17121900 ~ 17189315 (+) False si:ch211-126j24.1
XM_026917474.2 mRNA downstream 129324 17196280 ~ 17222532 (+) True LOC113528769
XM_026933142.2 mRNA downstream 157470 17224426 ~ 17235688 (+) True soul4
XM_026929441.2 mRNA downstream 173536 17240492 ~ 17277455 (+) True ptk7a
TU216450 other upstream 80776 16913258 ~ 16922922 (+) True G182877
TU216336 other upstream 418755 16583303 ~ 16584943 (+) True G182819
XR_003403746.1 other upstream 423395 16580236 ~ 16580303 (+) True LOC113537281
TU215983 other upstream 747846 16255063 ~ 16255852 (+) False LOC113532318
XR_004579090.1 other upstream 2291971 14708927 ~ 14711727 (+) False pdzk1ip1
XR_003402991.2 other downstream 129324 17196280 ~ 17215883 (+) False LOC113528769
TU216628 other downstream 372840 17439796 ~ 17445059 (+) False LOC113536271
XR_004579126.1 other downstream 531508 17598464 ~ 17636395 (+) True anos1b
XR_004579060.1 other downstream 605215 17672171 ~ 17751502 (+) True mcf2l2
XR_003403373.2 other downstream 605215 17672171 ~ 17749291 (+) False mcf2l2

Expression Profile