RNA id: XM_026916555.2


Basic Information

Item Value
RNA id XM_026916555.2
length 4456
RNA type mRNA
GC content 0.50
exon number 32
gene id ap3d1
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16814608 ~ 16847204 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGCCATTTCCTCGAAGGGTCCGCCGCCAGTCGGTGAGTTTGCAGTTACAGGAGGAGGACGGACCCAGCTGGCCTCGCCTTCTCCGGGCTAGGATTAGCAGACGATAGTGTTCTCCTGTGAGGACGGTGCTCAGGTGGATGAAAGCCTGTCTAACGGGCCTGTCAGCTCGGAAAACCCCGCTTGGTCTCCCCGGACAGGAGCGACTGAAGGCTTGGctttgcagcagcagcagcagccatgGCTTTGAAGATCGTTAAAGGGAGCATCGATCGGATGTTCGATAAAAACCTTCAGGACTTAGTACGTGGCATTAGGAACCACAAAGAAGATGAGGCCAAATACATCTCCACATGCATCGATGAGATCAAGCAGGAACTCAAACAGGACAACATTGCCGTCAAAGCCAATGCAGTGTGCAAGCTCACCTACttgCAGATGCTTGGATATGATGTCAGCTGGGCTGCATTCAACATTGTTGAGGTGATGAGCTCTTCTAAATTCACCTACAAgCGAATTGGTTACCTGGCTGCCTCACAGTGCTTTCATGAAGGCACTGATGTCATCATGctgacaaccaatcagattcgcaAGGATCTCAGCAGTCCAAATCAGTATGACACTGGCGTGGCTCTGACTGGCCTCTCCTGCTTCGTGACCCCTGACCTGGCCCGTGACCTAGCCAACGACATTATGACTTTGATGTCCCACACTAAGCCATACATTAGGAAGAAGGCTGTGCTTATAATGTATAAAGTGTTCCTGAAGTACCCCGAGTCCCTGCGCCCTGCCTTCCCCCGTCTCAAAGAGAAACTGGAGGACCCTGACCCAGGTGTGCAGTCAGCAGCAGTTAATGTCATCTGTGAGTTGGCCAGAAGAAACCCCAAGAACTACTTGTCCTTGGCCCCTCTTTTCTTTAAGCTGATGACCTCCTCCACCAACAACTGGGTCCTCATCAAGATCATCAAACTGtttggTGCCCTCACCCCTCTGGAGCCTCGTCTAGGGAAGAAGCTGATTGAGCCCTTAACTAACCTCATCCACAGTACCTCGGCCATGTCACTGCTGTATGAGTGTGTAAACACAGTGATAGCAGTGTTGATTTCTCTGTCCTCTGGGATGCCCAACCACAGTGCTAGCATTCAGCTCTGTGTGCAGAAACTGCGAATCCTGATCGAAGACTCGGACCAGAACTTGAAGTACCTGGGTCTGCTGGCTATGTCCAAGATCCTTAAGACGCACCCGAAGTCCGTGCAGTCACACAAGGACCTGATCCTGCAGTGTCTGGATGACAAGGACGAGTCCATCCGACTGAGGGCACTGGATCTTCTCTATGGCATGGTCTCTAAGAAGAACCTGATGGAGATTGTAAAGAAGCTGATGCTGCATGTAGATAAGGCTGAAGGCACCACGTATAGGGATGAGCTGCTAACCAAGATAATTGACATTTGCAGCCAGAGCAACTACCAGTACATCACTAACTTTGAGTGGTATATTAGCATTCTGGTGGAGCTAACACGGCTTGAGGGCACCCGGCATGGTCATCTCATTGCCTCTCAGATGCTGGATGTGGCCATCCGTGTGAAGGCCATCCGAGCATTTGCTGTGGCTCAGATGGCCATGCTGTTGGATAACGCACACCTGCTGACAGGCAACATGCAACGCAATGGCATCTGCGAGGTCCTCTATGCTGCCGCATGGATCTGCGGGGAATTCTCTGAGCACCTGGAAGACCCCATGCAGACACTGGAGGCCATGTTGCGGCCCAAAGTGGCAACTTTGCCAGGCCACATCCAGGCTGTATATGTGCAGAATGCTGCGAAGCTATTTGCAACATTGCTGCAGAAACATGAGGGGACAGAAGACAGCCAGGTTGCCCAGGAGGCTAGCCAACTGCTCATAGAGAGACTGCCTCTGTTCGTCCAGAGTGCTAACCTGGAAGTGCAGGAGAGGGCATCCTGTATTCTACAGCTGGTGAAATATATTCAGAAGCTGCAGCAGAAGGATGTGGAAGTAGCTGAGGAGGTATCTGCACTATTTGCAGGAGAACTTAACCCTGTGGCTCCTAAAGCTCAGAAGAAAGTGCCTGTGCCTGAAGGACTGGACCTGGATGCCTGGATCAATGAACCTCCATCTGAGAGCGAGTCTGAGGATGAGAAGCCCAAGACTTTGTTTGCTAAAGAGGAGACCAAGCACTCTCGACCTCGCCACACTGAAGTGGACGAGAAAGAGCTGGCAAGGAGAAGGGAAGCCAGGAAGCAGGAACAAGCCAACAACCCCTTCTACATTAAATCCTCTCCATCCACTCAGAAGGTGTATCAGGACGCGCCAGGTGTAGAGCACATTCCAGTGGTACAGATTGACCTCAGTGTGCCACTCAAGGTCCCAGggaTGCCCATGTCTGACCAGTACCTGAAGCTGGAGGAGGAGcgtcggcagaaggagaaggcggagaagaagaagaaagagaaaaagaagaagaaagagaagcgTGGGAAGGGGAAGAGAGATGACTCGGGACCTGAGAGTGAGGAAGATATCACACCTGCTCACCAGGTGGACATCGTCACTGAGGAGATGCCAGAGAATGCCTTACcaagtgatgatgatgacaaagACCCCAATGATCCACATAAAGCTCTGGACATCGATTTAGACAAGCCCCTGGCAGACAGTGAGAAGCTGCCGGTGAGGACACACCGCCCTGAGGTTGTTAAGAGCCCTGGGGCAGATGAAGACGGAGAGGGTTTCCATCAGGAGCCTAAGAAGAGGAGCAgcaaggagaagaaagagaagaagaaggacaaGGATAAGGACAGGAAGAAGAgcaaagaggaagagaagaagaaaaagaagaagaaacacaaaaatgatgTGGAGGAAGAACCAGTGGAGCCTCACTCAGAAAATCCAGTGCAGTTAGAAGAGACCAGTGTGGTGGCGGCCCCACCTACCTCCACATCTGCCGAGgagGCAGCGGTTCCACCATCAGCCCCAGCCCCAGCCCCTGAGACAAGTGTAGCTGCAGCCCCAGATTCTGAATCAGACGAGCCCAAAGATGAAGAACCCGAAGAGATGAAATCATCTAAACataagaagaaaaagcagaagaaagaaaaggaaaaggatgaaaaggagaagaagaagaaaaagcgccatcatcaccaccaccaccaccaccacagtgAGGGAGACGGGAGGGATTCGGTACAGAATGgcacagtggaggaggaggagcctCTACCGCCCATGTCAAACTACTGTCTCCTGGCTGAAAACACATACATTAAAATGGTGTACGATATTCAGGGAAATTTGCAGGATGGCAGTCAGGTCGTGGTGTCTGTCATCTTTGAGAACAAGAGCAACAGTTTCCTCAAGTCCATGGAGTTCAATGTGCTGGACTCCCTCAACTCAAAACTACAGCGGCCGGATGGAGCTGGACCCCATGATGGGCTCGTCGTGCCCTTCCAGCTGCCTCCAGGGGTGTCAAATGAGGCCCGTTTCGTGTTCTCAGTGCAGAGCATTGTCATGCCTCAGAAACTGAAGGGGACCCTCACCTTCATAGTAAAGTCGGAGGAGTCCTCAACTCATGAGAAACTGGACTTCAAACTGCACTTTACCTGCACATCATACCTAATCACAACTCCATGCTACAGCGATGCCTACGCCAAGCTGCTGGAGTCTGGGGACCTAAAGAGCAGCTTTCTGAAGCTGGAGGGAGTCAACATGCCTTTCCACCACCTGTTGGCTAGAATCTGCTTCCATCACCATTTCTCTGTTGTGGAGAGGATCGACTCGTGTGCCTCCATGTACAGCAGGTCAATCCAGGGTCACCATGTCTGTTTGCTGGTCAAAACCGCTGATCAGACAGTCTCCATTGATGCTAAATGTGATGAGCCATCACTGCTGGGGAATGTGCTGGAAGAGATAAAGCAGACCTTCTCACAATGCTGATTGTGTCTGAGAGACCAACGGTGCCCTTGACCTCCCTCTCCCATGCCCTCTTGCTGAATCTGACACTCAGAATCATATCACAAACACTGAGGCTGGTTTCTCCCTCGTCTCTACCTACCTTATATTTATTGGAACTCTCGACTCGATTTATCTTTCTCTTGtattcctctctcttttttttctttctagtcTTCGTGTCAGCCTCAGTCTGGTGTTCGATCTCACTAACCTTCCTTCAGTTTATTAACTggatttatttgttgttttaatgttggttgatacattttttttgtattgtgttgcattttgtttgttgctttctttcattttggtGTTCTCTCTGCGTCTTTGTTGAATCTTCGAATTAAACTTGAGTTTAGTGTCTTCCTcctcagtcagtctgtgtgcgtgtgtctgtgtgcgtgtgtctgtgtgcgtgtgtctgtgtgcgtgtgtctgtgtgcgggTGTCTGTGTgcggtgtgtctgtgtgcgggTGTC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030117 membrane coat cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216395 lncRNA upstream 89081 16713713 ~ 16725527 (+) True LOC117598408
XR_004579080.1 lncRNA upstream 93860 16708625 ~ 16720748 (+) False LOC117598408
TU215985 lncRNA upstream 554292 16260058 ~ 16260316 (+) True G182483
TU215642 lncRNA upstream 805373 16006054 ~ 16009235 (+) True G182190
TU215562 lncRNA upstream 824198 15988630 ~ 15990410 (+) True G182116
XR_004579047.1 lncRNA downstream 5204 16852408 ~ 16857137 (+) True LOC117598387
TU216484 lncRNA downstream 113455 16960659 ~ 16961299 (+) True G182906
TU216493 lncRNA downstream 142115 16989319 ~ 16989519 (+) True G182910
TU216515 lncRNA downstream 232433 17079637 ~ 17083529 (+) True G182932
TU216521 lncRNA downstream 274709 17121913 ~ 17134999 (+) False si:ch211-126j24.1
XM_026928360.2 mRNA upstream 362 16801804 ~ 16814246 (+) True hdgfl2
XM_026914053.2 mRNA upstream 28409 16774458 ~ 16786199 (+) True chaf1a
XM_026916089.2 mRNA upstream 164494 16606126 ~ 16650114 (+) False unc13a
XM_026923600.2 mRNA downstream 11723 16858927 ~ 16862149 (+) True LOC113532286
XM_034308535.1 mRNA downstream 12003 16859207 ~ 16862149 (+) False LOC113532286
XM_026916010.2 mRNA downstream 65368 16912572 ~ 16947458 (+) True LOC113527868
XM_026919098.2 mRNA downstream 102544 16949748 ~ 16975577 (+) True tle5
XM_026919107.2 mRNA downstream 102555 16949759 ~ 16975577 (+) False tle5
TU216336 other upstream 229665 16583303 ~ 16584943 (+) True G182819
XR_003403746.1 other upstream 234305 16580236 ~ 16580303 (+) True LOC113537281
TU215983 other upstream 558756 16255063 ~ 16255852 (+) False LOC113532318
XR_004579090.1 other upstream 2102881 14708927 ~ 14711727 (+) False pdzk1ip1
XR_004579085.1 other upstream 2167786 14622543 ~ 14646822 (+) True si:dkey-121a11.3
TU216450 other downstream 66054 16913258 ~ 16922922 (+) True G182877
trnak-cuu_26 other downstream 182668 17029872 ~ 17029944 (+) True trnak-cuu_26
XR_003402991.2 other downstream 349076 17196280 ~ 17215883 (+) False LOC113528769
TU216628 other downstream 592592 17439796 ~ 17445059 (+) False LOC113536271
XR_004579126.1 other downstream 751260 17598464 ~ 17636395 (+) True anos1b

Expression Profile