RNA id: XM_026916844.2


Basic Information

Item Value
RNA id XM_026916844.2
length 2062
RNA type mRNA
GC content 0.48
exon number 13
gene id dazap1
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19676216 ~ 19691780 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCCCGTGGCTTGGCGTCAGCGTTGCGCAGGTTGGGTTTGAACCGAAAGCGGAGTGACCTTCCCGGGGTAGGAGCAGAGAGGAGGCAGCTGTAGGAGACTGAGGCAGCTGACTAATGTCCGCACTCCAGTCCACAACTCTCGCTACAGAGATGAACAACCTACCTGGAGATGAAATTGGGAAGCTGTTTGTGGGTGGATTAGACTGGAGTACTACTCAAGAGACTTTACGAAATTATTTCTCCCAATATGGAGAGGTTGTGGACTGCGTCATCATGAAGGACAAAAGCACAAATCAGTCCAGGGGCTTTGGCTTTGTGAAGTTTAAAGATCCAAACTGTGTTCGGACTGTACTGGACACTAAACCTCATAACCTTGACGGTAGAAATATTGACCCTAAGCCATGTACTCCAAGAGGAATGCAGCCAGAGAAGACAAGAGCAAAAGATGGCTGGaAAGGAGGTAAAAGTGACAGCAATAAATCCAAGAAGATATTTGTTGGTGGAATTCCACACAACTGCGGTGAACCTGAACTCAGGGACTATTTTAACAGATTCGGAGTGGTCACAGAGGTGGTAATGATCTATGatgcagagaaacagagaccCCGAGGTTTTGGATTTATTACTTTCGAGGCCGAACAATCAGTGGACCAGGCTGTCAACATGCATTTTCACGACATCATGGGCAAAAAAGTTGAAGTGAAGAAGGCTGAGCCTCGGGACAACAAAGCTCCTGGCCCTGGGCAGCTGGGAGCCAATCAGTGGGGACCCAGAGCCATCTTAAGTGCGGCCAATGGCTGGGCTGCACAGCCTGCTCAGAGCTGGCAGCAGAGCTATGGCCCTCAGGGTGTTTGGGTGTCCACAGGGCAGCCATTAGGGGGATACGGTCCTCCTTTGCCAGCAGGCCGAGGTGCTGCCCAACCTCCCTCGCCCTTTAATGCATTCCTAGTAACAGCACCCCCACCAGGAGGATTTGGGGCACCTCAGGGATATCCACAGCAGGGCTACAGCACACCTCCTCAATTTGGATATAGTTTTGGCACGCCACAAGGTGACCAGTTTGTACCGCAAGGAATGCCTCCACCTCCTACTACTCCTGGAGCTGGGCCTCTGGGTTTTGCCCCTGCTACTACCCCTACTCAGGATATGAGCAAAGCCCCACCAGCACAGCCTGACTTCTCTTATAGCCAGTACGGCTTGGGTAACTATCCTCAGGACCCCTCTGCCTACGGACCAACGCGTCCTTCTCACAGTTATGGTCAGGATGAGCAGGGATATAGTGCAGGTTATGGGCAGGATCTGAGTGGCTTTGGACATAGCTTTGCCGACCCTAGCCAGCAGACTGCCTCATATGGTGCCCCTTCAGCACAGCCTACGTCAGCGCCGCAGCCCACAGCGAGTACTTTTGGTCGTGGGCAAAACCACAACGTCCAGGGCTTCCATCCTTATCGGCGCTGACCATTCCCCCTCTGACTTCCTCAATGCAATACAAACCGTCAGGGAATCGATGTTCTGATCACAAATGCCACTGGATTGTGAGCTTGATGAACATTACAAACGTAACTGgagggtgtttgtgtgtatgtgtggttgtgtgagtgtgtgtgtaagttatGAACAGGGACTATACTCCTTTATGAGGAGGCCacatttgttgtgtgttttctagTAGGGCAGCGCTATTTAGCAATAGATTTTCTTGATTGGTGAAACATCAGCACAGAACCATGCCAGTCAGCGGAGTGACAGGGTCTCCCATTTCCTCAGCTTTAATTCTATTAgggcaaaaatattttattttcaattttgtggATTTTTGTTTACTATCTGAGCCtttgaccattttatttaaaaattatttgaaatagaACTTACAAACATGTATTATAAACCTGAActgtgcaattttttaaaagaattttgtACTATTAAATGTGcgcttttcttgtttttatttaaggaTGTAGTGGATTCCCTCAGGTGGCTGTTTTAGTGCACTTTGCACttatgcaaaaaagaaagaaattttatttgaaataaacgATTTAAAGATACATACAAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14411 MSI; RNA-binding protein Musashi

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218499 lncRNA upstream 11725 19661092 ~ 19664491 (+) True G184617
TU218491 lncRNA upstream 73577 19548663 ~ 19602639 (+) True G184614
TU218481 lncRNA upstream 121398 19553977 ~ 19554818 (+) False si:ch73-40i7.5
TU218492 lncRNA upstream 125890 19548663 ~ 19550326 (+) False G184614
TU218480 lncRNA upstream 130714 19526877 ~ 19545502 (+) False LOC113546543
TU218615 lncRNA downstream 11855 19703635 ~ 19704250 (+) True G184718
TU218741 lncRNA downstream 116933 19808713 ~ 19809254 (+) True G184823
TU218759 lncRNA downstream 152267 19844047 ~ 19844800 (+) False LOC113534304
TU218810 lncRNA downstream 229691 19921471 ~ 19947483 (+) True G184882
TU218828 lncRNA downstream 262814 19954594 ~ 19955040 (+) True G184900
XM_026922030.2 mRNA upstream 16796 19652838 ~ 19659420 (+) True ndufs7
XM_026925040.2 mRNA upstream 27300 19642225 ~ 19648916 (+) True ctdspl3
XM_034308804.1 mRNA upstream 27300 19642902 ~ 19648916 (+) False ctdspl3
XM_034308939.1 mRNA upstream 38025 19607447 ~ 19638191 (+) True arid3a
XM_026930531.2 mRNA downstream 3447 19695227 ~ 19697706 (+) False rps15
XM_034308633.1 mRNA downstream 55102 19746882 ~ 19764051 (+) False gtpbp3
XM_034308632.1 mRNA downstream 55103 19746883 ~ 19764051 (+) True gtpbp3
XM_034308741.1 mRNA downstream 89448 19781228 ~ 19796168 (+) False ushbp1
XM_026918792.2 mRNA downstream 91954 19783734 ~ 19796168 (+) True ushbp1
TU218488 other upstream 122694 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other upstream 122694 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218227 other upstream 406994 19254957 ~ 19269222 (+) False adgrl4
TU217312 other upstream 1879597 17795445 ~ 17796619 (+) True G183549
TU217273 other upstream 1894403 17773713 ~ 17781813 (+) False ect2
TU218602 other downstream 3464 19695244 ~ 19700274 (+) True rps15
XR_004579107.1 other downstream 136206 19827986 ~ 19834414 (+) False tax1bp3
XR_003403385.2 other downstream 174018 19865798 ~ 19871463 (+) True ccl44
TU218923 other downstream 458191 20149971 ~ 20150894 (+) True G184979
XR_004579103.1 other downstream 1498006 21189786 ~ 21210539 (+) False wipf2a

Expression Profile