RNA id: XM_026917474.2


Basic Information

Item Value
RNA id XM_026917474.2
length 2978
RNA type mRNA
GC content 0.46
exon number 16
gene id LOC113528769
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17196280 ~ 17222532 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGATCTCAGTCTACTGCGCCTACTGGAGCTGCTGCTCTGTCTGTGCTGGTGGATTTTCTGGATGTCGGTACACTGGAGGACTGCCGTTAACCGGGTCGtctcgcgcacacacagacacacacacacacacacgcatgagCTGTTATTGGACCTGAGCTGCTGATCTGTGAAGTGTAACCGTGAGAGCATGTCCAACATGGTGTTCTGCTGTGAGGAGAAGCTTGAGAGACTAACGCAGGAGCAGATCATCTCCAAAACAAAGATGGTGATCCAGGGCCTGGAGGCACTGAAGAGTGACCACAATGTCATGCTGCAGAGTCTGATGGACATCATCAAGTGCTTGAACAAGGATGAGGAGGCTGGCCTGGTGCATGAGAAATCCTCACTGCTGCACAAGTCTGTGGAGATGATTGAGTTAGGCCTGGAGGAGGCAAAGGTGCTGACGGCTCTGGCTGCCCACCTGAATGCAGTGGAATCAGAGAAACAGAAGCTGCGAGCTCAGGTGCGTCGGCTTGGCCAGGAGAATAAGTGGCTGTGGGATGAACTGAGCAACGTGCAGCAGAAACTGCAGAAGTGTGAGCAGAGCTTAGCCcaggtggaggaggagaagaagcaCCTGGAGTTCATGAACCAGCTCAAGAAGTATGACCAGGAAGCCTTGCCAGAGGACGGGGAAAACGAGGAGATAGCAAAAGACGTTCTGGATGAGTTGTTCCCTAACGATGAAGAGTCAAGTCAACCAGGAACAACGCGCCAAGCAAGCAGTGCGGCAATTGCAGCAGCCCAGAAGGGGGGCTATGAGGTCCCTGACCGCCTCAGAACCCTCCATAATCTGGTGATACAATATGCCAACCAAGGCCGCTATGAAGTGGCAGTGCCACTGTGTAAACAGGCTCTGGAGGACCTGGAGAGGACTCTGGGCCATGATCACCCCGACGTAGCTACCATGATCAACATCCTCGCTCTTGTATACAGGGACCAGAGTAATTTCAAAGAAGCGTCCCGTCTCCTGTATGATGCTGTGACTATCAGAGAGAGGACTCTGGGTGAGGAACATCCCTCGgTGGCTGCTACGCTGAATAATCTTGCAGTGCTGCATGGGAAGATGGGGAAGTACGTGGAGGCCGAGCCGCTGTGTAAAAGAGCTCTGGAGCTGAGGGAGAAGGTCCTGGGCAGAGATCACCCAGATGTGGCCAAGCAGTTGAATAACATGGCACTGGTTTGTCAGAACCAGGGCAAGTATGATGAGGTGGAGTATTACTACTGCAGAGCCCTCGACATATATGAGAAGAACCTGGGTCAGGATGACCCCAATGTCgccaaaacaaagaacaatCTGGCCTCATGCTATCTGAAACAGGGTAAATATAAGGAGGCTGAGATCCTGTACAAAGAGATTCTTACACAAGCTCACAAGAAGGAATTTGGGACAGTAGATGCTGAAACCAAACCTGTCTGGATGTACGCTGAGGAGGGCAGAGGCACGACTGCGGGTAACAACATTCATTATGCAGAATATAGAGGCTGCCAGGTGACCAGCCCTATACTAAACAGTGCCATGAGGAGTCTCGGAGCTCTGTATCGACATCAAGGCAAAAATGAAGCGGCAGAAATTATGGAGGAGTACGCCATGAGAACACGCAAACAGGGAGCCACAGTGGAGCCTCTGAAGGACGCTGGCCGGAAGAGAAGCTCTTCTCATTACAGCGTTAAGTATGAATCTGGAGATGATGGAAATGTGGAGTGGAGTGGGGATGGCATTTTGAAAAGAACTGGTTCTCTGGGTAAAATGCGAGAGGTGCTGCGCAGGAGCAGTGAGATGCTGGTGAAGAAACTGCAGGAAACGATACTGCAAGATTCCCCTAACCCTAACTTGAAGAGAGCAGCCTCACTGAATTACCTGAACAGGACAGGAGATGAGTATGAGGGTGGGAGAGGAGGCAGGAGGCTGAGAGACAGTCGAGCCCTGAGCTCCAGCACTGTGGAGCTATACGACAGCACTGGAAAatagaatacacacacacacacacacattcacttgcCTGCACacaaattcttttcttttaccttgatgcaaacatttatatttctaGCTTATGTACCATATCCTGTACAAGTGAGTGAAATTCTTCCACTCATTGGTTGTTTTTCTGTACAGTAAACTTGAaatcatgtttgaattttaaaaccagtgattactgttattaataacTAAGGAATGTGcctatacaatatttttatatggaATGTGCAGTGTGATTTACTTGATGAAAACGGCTATTATTTTTGATTCTCCATGCGCCTTTTGAATGTTCACACCTCTCAGGGAAATCTAActctcccaaaaaaaaaaaaaaaaaaaagggcagtgATGACTAAACGAAGGTCACGTACCTAAAActgtcttgtttgtttgttttatttcacagctGTGTGCACTGTACTGCACAGCTGGGTTGTTGTTCATGCTGTTGAAGGCAATCATTTGCAGTAGCATTGGGCGACACTTATAATAGCCTTTCGTTCTACAGAAAAAGAAGTAAGGAAGATTATACCTAAAAATAGGTGTGATCTCACAAATGttagatgtaatttttttgttggattCATCATGGAATGTCTTTGCTGATGCTGCATGGGCTACTCAGGGTTAAAGATGACAAAAATGTTGATTATCTGTATAGTTCAGTCAGCGTCACTGGGAGAGAGGTTTGTATTAGACTGTATAGTTGTTGAAGCACTGAGTGCTGCAGAAATTTCTGTTGATTTGCTTTCAGACATTTCAAAGTAAggcaaaacatttcagttttattctgttttatatcTATTGTTTTTGTGGACCATAGAAAGCTgtgaatttcattattttgtcttaaaagGGAAAACAGAAATCCTGTGGAGTTCATTTTGTGCCCTGGTCAAATTCATGATGTACAAGCAGagtaaataagcaaataaatctTCAGTCTTTACAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216521 lncRNA upstream 61281 17121913 ~ 17134999 (+) False si:ch211-126j24.1
TU216515 lncRNA upstream 112751 17079637 ~ 17083529 (+) True G182932
TU216493 lncRNA upstream 206761 16989319 ~ 16989519 (+) True G182910
TU216484 lncRNA upstream 234981 16960659 ~ 16961299 (+) True G182906
XR_004579047.1 lncRNA upstream 339143 16852408 ~ 16857137 (+) True LOC117598387
TU216605 lncRNA downstream 186013 17408545 ~ 17411425 (+) False kcnh1b
XR_004579106.1 lncRNA downstream 194198 17416730 ~ 17423320 (+) True LOC113535983
XR_003403652.2 lncRNA downstream 194198 17416730 ~ 17423320 (+) False LOC113535983
TU216612 lncRNA downstream 194238 17416770 ~ 17423219 (+) False LOC113535983
TU216632 lncRNA downstream 227925 17450457 ~ 17450736 (+) True G183032
XM_026916023.2 mRNA upstream 6965 17121899 ~ 17189315 (+) True si:ch211-126j24.1
XM_026916031.2 mRNA upstream 6965 17121900 ~ 17189315 (+) False si:ch211-126j24.1
XM_026916476.2 mRNA upstream 129324 17003698 ~ 17066956 (+) False tle2b
XM_026933142.2 mRNA downstream 1894 17224426 ~ 17235688 (+) True soul4
XM_026929441.2 mRNA downstream 17960 17240492 ~ 17277455 (+) True ptk7a
XM_026918740.2 mRNA downstream 58717 17281249 ~ 17331250 (+) True mark1
XM_026922364.2 mRNA downstream 143166 17365698 ~ 17411326 (+) True kcnh1b
XM_026922372.2 mRNA downstream 143166 17365698 ~ 17411326 (+) False kcnh1b
trnak-cuu_26 other upstream 166336 17029872 ~ 17029944 (+) True trnak-cuu_26
TU216450 other upstream 273358 16913258 ~ 16922922 (+) True G182877
TU216336 other upstream 611337 16583303 ~ 16584943 (+) True G182819
XR_003403746.1 other upstream 615977 16580236 ~ 16580303 (+) True LOC113537281
TU215983 other upstream 940428 16255063 ~ 16255852 (+) False LOC113532318
TU216628 other downstream 217264 17439796 ~ 17445059 (+) False LOC113536271
XR_004579126.1 other downstream 375932 17598464 ~ 17636395 (+) True anos1b
XR_004579060.1 other downstream 449639 17672171 ~ 17751502 (+) True mcf2l2
XR_003403373.2 other downstream 449639 17672171 ~ 17749291 (+) False mcf2l2
TU217273 other downstream 551181 17773713 ~ 17781813 (+) False ect2

Expression Profile