RNA id: XM_026917910.2


Basic Information

Item Value
RNA id XM_026917910.2
length 2714
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC113528887
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17507207 ~ 17532678 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGAACCTGCTGTCTGAAGTTGTGTAAACTAGCGGCTGTAACTGTAGTGCAGGACAGTCACTAATGTCTGCTTTGTCGCTCTTAAAGGGTCTAAAAGGTCGCCAAATGTAGCGACAGAGTCACAGTTAGCAACACTGGGTATTACAATGTTGCTGTTGTTTCCTTTCCACAGCATTTCACCTTACATCAGGAGATTGTTTCCTTcttgaagaaagaaaatgcaagCTGATTTGCTGTTCTCGTCTCGCCGCTCACCAGTTGTCTGCTTGAACGGCTGTGTATCCTCCAGTCAGCCTCTAGCATCCAACATTGGACTAGAAATCCTGAAAAGGGGTGGAAACGCTGCAGATGCTGCTGTAGCTGTGGCCGCAGCCCTGAATGTAACCGAGCCTACAAGCACAGGCATCGGAGGAGAtgccttttgtcttttttatgaCGCTGCCACCAAACAGGTGCGAGGACTTAATGGGAGTGGAAGGAGTCCTAAAGCTCAGACTCTGGAGCTGATGGAGAGATGTGGATTCAGTCAGAGTAACCCACCACATGACTTCCATGCCCTCAATGTCACTGTGCCAGGAGCTGCAGCATGTTGGTGTgacacagtgaccttgtttgGAAGCAAAACGCTGTCTTTGGCTGACCTGCTACAGCCAGCTATAGATCTGGCTCAGAACGGTTTCCCAGTGGCCGAGATAACAGCGTACCAGTGGGCTAAGGGTGCTGAATCCCTGAGGGCTGCTGGGAGAGAACTGGGACGAGATTTACTCATTAACAATCAGCCACCTAAACATGGACAGGTCATGACCAATCCCAACCTCGCACGAACGTTCCAGGAGCTTGTGCTGTGTGGGAGAACGGGGTTCTATGAGGGCAGGATCGCCCAGGCTGTGGTTGATGTCGTGCAAGAAAATGGTGGCGTGATGAGCTTGGATGACATGAAGAACCACGTCACCACTGAGATCACTCCGATTTACATTAATTACAAAACGGTACGAGTTTGGGAGGTCCCACCCAACAGTCAAGGGATGGCAGCTCTTATTGCCCTTAATATCCTTGAGAATGTTCCTATCAAAGATCTGGGTCACAACAGTGCCCACTACCTGCACATCCTGGTTGAGTCACTGAAATTGAGCATGACTGATACCATGCACTTCAGCACAGACCCAGACAAGGTGAACGTGCCTGTGGAGGGGCTTCTTTCCAAGGATTATGCTCTCCAGCGAGCCAAGTTAATCCAAATGGACAAagccaggagtgtgtgtgatcacgGGATTCCCACAGGAAGTGACACGGTGTATTTCACTGTGGTGGATGGAGAGGGAAATGCCTGCTCCTTTGTGAACAGCAATTACATGGGCTTTGGCACTGGCCTTGTCCCCCGAAACTGTGGATTTTCCCTGCAAAACAGAGGTGCTAATTTCTCTCTGGACTCCACTCATGTGAACTGCATAGGCCCAGAGAAGAGGCCATACCACACTATAATCCCTGCCATGCTCACAGATCCCTTGTCAGGGCGCCTCCTCTGCTCCTTTGGGGTGATGGGGGGCTTCATGCAGCCTCAGGGTCATGTGCAGGTATTGCTCAATATGTTAGAATTTGGCATGAACCCTCAGCGTGCACTCGATGCCCCACgtgtgtttgtgcagtttgACCAGGCTGGTTTTGCCCTAATCCCACTGGCCATCTGCAGCATTGTGGCCAACGTTCTGCTAATTTTCCCTGATGGAGAGGAAGATTTGAGCAAGTACATGTCTTCCTTCACGGAAATAGGAGGTGGCGGTATCACAACATTCATAGCTGGTTTCGCTTTTTTGAGCATGGCGAAATGTGCTGACTCCTGTGGAAACGAGAACTATGCTATGTATGGCTCTATGCTAGCGGCTCTCATTGGACTGACCGGCTCTGGCTATTCCTTCATCATCTCAGCCATGCCCATGCTAGAGCTCCATTGCTTGATTAATTCGAATTGGGCAAAATACCTGTTTGCCCGTGAATCCTGGTCTAATTGTGAACAGCCTGCTCACAATGCTGAGTGGAATGTGACGTTGCTGTCCATCCAGCTAGTCCTCAGCCTGATCGAGTTCCTCATTTGCTCTGTGCAATTTATCAGCGGATTGGTCAGAACCATCCGCAAGCCTTGCAGCATTCTGAGTGTTTGAAGACACAATGGACAACCGTCCCATATATCCCCAATAGACATTGTCATTCTAATGATAGgctgctattaaaaaaataataattctgaaaATACCTGTCAGACTAAACCAGGGTCAGTGAATTTGGGAATTGGGTCAGTGGAGCATGACAACCTGTTCTAGCTTGACCAAGAACAGCTCTTATCAGTCTTATACTATTCTAACACAATCAACCCCAATACAGTACCACTGTCTGATACTCAGACCTAGAActataaaaagaaacagagataaGTTACACAATTTTCTGTCCATAGACAGTAATAgagaaactgattttttttctgaaattatataAACACCACTTAGAATTAATTACTGAGACAAAATAATCAAGACAATGTTGCTtttataaaaagacaaattaaattaaagtgtatTTTATAAGTTCTGATTATACACTGATTATACACTGTTTAGTTTCATTGTTCATTTTGTTAAAAGTATTTCTTGTGTTTTCTGTATGTTTCATTTTAAGaaaattgtaaattattttccatttcttgataaaaaaagtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216632 lncRNA upstream 58508 17450457 ~ 17450736 (+) True G183032
XR_004579106.1 lncRNA upstream 85924 17416730 ~ 17423320 (+) True LOC113535983
XR_003403652.2 lncRNA upstream 85924 17416730 ~ 17423320 (+) False LOC113535983
TU216612 lncRNA upstream 86025 17416770 ~ 17423219 (+) False LOC113535983
TU216605 lncRNA upstream 97819 17408545 ~ 17411425 (+) False kcnh1b
TU216676 lncRNA downstream 44964 17577642 ~ 17583785 (+) False G183058
TU216673 lncRNA downstream 45062 17577740 ~ 17580114 (+) True G183058
TU217213 lncRNA downstream 192085 17724763 ~ 17725260 (+) True G183478
TU217332 lncRNA downstream 355449 17888127 ~ 17888353 (+) True G183566
TU217344 lncRNA downstream 370107 17902785 ~ 17902984 (+) True G183578
XM_026919303.2 mRNA upstream 12065 17453782 ~ 17497179 (+) True wwtr1
XM_026919313.1 mRNA upstream 14356 17454147 ~ 17494888 (+) False wwtr1
XM_026930276.2 mRNA upstream 59463 17446400 ~ 17449781 (+) True commd2
XM_026930164.2 mRNA upstream 62996 17439822 ~ 17446248 (+) True LOC113536271
XM_026922364.2 mRNA upstream 97918 17365698 ~ 17411326 (+) True kcnh1b
XM_026931656.2 mRNA downstream 1766 17534444 ~ 17545067 (+) True cp
XM_026929958.2 mRNA downstream 65786 17598464 ~ 17636395 (+) False anos1b
XM_034309006.1 mRNA downstream 65786 17598464 ~ 17636395 (+) False anos1b
XM_026927180.2 mRNA downstream 106111 17638789 ~ 17645112 (+) True senp5
XM_026927190.2 mRNA downstream 106111 17638789 ~ 17645112 (+) False senp5
TU216628 other upstream 64185 17439796 ~ 17445059 (+) False LOC113536271
XR_003402991.2 other upstream 293361 17196280 ~ 17215883 (+) False LOC113528769
trnak-cuu_26 other upstream 479300 17029872 ~ 17029944 (+) True trnak-cuu_26
TU216450 other upstream 586322 16913258 ~ 16922922 (+) True G182877
TU216336 other upstream 924301 16583303 ~ 16584943 (+) True G182819
XR_004579126.1 other downstream 65786 17598464 ~ 17636395 (+) True anos1b
XR_004579060.1 other downstream 139493 17672171 ~ 17751502 (+) True mcf2l2
XR_003403373.2 other downstream 139493 17672171 ~ 17749291 (+) False mcf2l2
TU217273 other downstream 241035 17773713 ~ 17781813 (+) False ect2
TU217312 other downstream 262767 17795445 ~ 17796619 (+) True G183549

Expression Profile