RNA id: XM_026918527.2


Basic Information

Item Value
RNA id XM_026918527.2
length 5539
RNA type mRNA
GC content 0.45
exon number 27
gene id slc4a10a
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21561055 ~ 21605914 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctctctctctctctctctctctctctctgagggtCGACGACTAGCCAATGGTTTCCAGTGTAAGCGTGCAGCTGCTTCAGCCGTCTCAGTGTGTGCATCTCTTCTGTTAGTAgatacactgaaacacactgagcaCACATTCAGCCGTGGCTCGGAGGACAGAAGAATGGACATAAAAGACCAAGGAGCGCAAATGGAGCCTCTTCTCCCGCCGGTTCAGAGCCCTGCGAGCAGTGAGGGGAGAAATGATGAGGAGGCTGTGTTGGACAGAGGCGGCACTCGCTCCATGCTCAATACCAACTTTGAGAAAGAGGAGCTAGAAGGTCACCGTACTCTGTACATCGGGGTGCATGTCCCACTCGGTCGGAGGTCACACAGGCGACATCGTCACCATGGACACCGTCACAGGAAGAggtcaagagagagagactcaggaaCTGAGGATGGCCGGGAATCTCCCTCATACAACACTCCGTCTCAGAGGGTGCAGTTTTTGTTGGGGATggaagatgaggatgaggagcaCATTCCTCATGCACTCTTCACTGAGCTGGATGAAATTTgtctgagagagggagaggatgCTGAGTGGAAAGAGACTGCAAGATGGCTGAAATTTGAGGAGGATGTGGAGGACGGAGGGGAGAGATGGAGTAAACCCTATGTAGCCACACTGTCTCTGCACAGCCTGTTTGAGCTGCGCAGCTGCATCCTCAatggcatcgtcatgctggacaTGAGAGCTAACTCTCTAGAGGAGATTGCAGACATGGTTCTCGACCAGCACGAGACATCAGTCACTATCGGAGAGGAGGTGCGTAGGAAAATCCGCAATGCTCTTCTCAAACAGCACCACCACCAAAACCAGAAGAAACTGGCCAACCGCATCCCCATCGTCCGCTCATTCGCTGACATCGGGAAGAAGCAGTCCGAGCCACACTCTATGGATAAGAACGGTCAGATGGTGTCACCTCAGTCACAGCCGAGCTGCACAGAGGGCCGAGGCGATGGCAGTCGAGAGAACAGTGCAGTGGACTTCAGTAAGATAGATCTCCATTTTATGAAGAAGATCCCACCAGGAGCAGAGGCGTCCAACATCCTGGTTGGAGAACTGGAGTTCCTGGAGAAGCCAGTGGTGGCTTTTGTGCGGCTTTCTCCAGCTGTGCTGCTCAATGGCTTGGCTGAAGTCCCCATCACCACCAGATTTCTGTTTATACTGCTGGGGCCGATGGGAAAGGGGCCTCAGTACCATGAGATCGGACGCTCCATTGCCACACTAATGACAGATGAGGTGTTCCACGATGTGGCATATAAGGCGAAGGACCGCAGTGATTTGGTTGCTGGAATTGATGAGTTTTTGGACCAGGTGACAGTGCTACCACCAGGAGAGTGGGACCCCACCATCAGGATAGAGCCACCCAAGAACGTGCCCTCTCAGgagaaaaggaaaattcCTTCTCTGCCTAATGGAGTGACTGAGctgggagagacagaggagcaTGGAGGCCATGGAGGACCTGAATTACAGCGCACTGGaaaGTTTTTTGGAGGCTTTATCCTCGATATAAAACGCAAAATTCGTCACTACCTTTCTGACTACACTGATGCCATCAGCCTGCAGTGTCTGGCCTCCTTCCTGTTCCTCTACTGCGCGTGCATGTCTCCTGTCATCACTTTCGGAGGTCTGCTGGGGGAGGCCACAGAGAATCGAATAAGTGCTATTGAGTCTTTGTTCGGCGCATCTATGACTGGGATAGCGTACTCTCTGTTTGCTGGGCAGCCTCTCACTATCCTGGGCAGCACTGGTCCTGTCTTGGTGTTTGAGAAGATCCTCTTCAAATTCTGCAAGGAATATGGACTGTCCTACCTCTCCTTGCGTGTGTGTATCGGGCTGTGGACGGCTTTCTTCTGCCTGGTCCTGGTGGCCACAGATGCCAGTTCACTGGTGTGCTACATCACTCGCTTCACAGAGGAAGCCTTTGCTTCACTCATCTGCATCATTTTCATCTATGAAGCTCTGGAGAAACTAGTGCACCTGGGAGAGACATATCCCTTCAACATGCACAATGACCTCAACAATCTCACCCACTACTcCTGTGTTTGCACGGAGCCAAAAGAGCCAAGCAACAGCACCCTGCAGCACTGGCAGAAGAAGAACATCACCAGCTCTGAGATCAATTGGTTAGGTCTGGACGTCAAGAGCTGTGTGGAGCTTAGGGGCGAGTTCCAGGGCAGTGCATGCGGCCATCATGGCCCCTACATCCCCGATGTTCTCTTCTGGTCCATCATCCTGTTCTTCGCCACCGTCGCCATGTCTTTCTTCCTCAAGGAGTTCAAAACTAGCCGCTACTTCCCCACCAAgGTGAGGGCAATCATCAGTGACTTTGCAGTCTTCATCACTATCGTCACCATGGTGGGGACCGACTTTGCTCTGGGGATTCCCTCTCCCAAACTGCAGGTCCCCAATGAATTTAAACCTACCAGAGATGACCGCGGCTGGATCGTCAGCCCTCTGGGACCAAATCCGTGGTGGACAATCCTCATCGCCTTCATCCCAGCACTGCTTTGCACCATCCTCATCTTCATGGACCAGCAAATCACGGCTGTCATCATTAACAGGAAGGAACACAAGCTGAAGAAAGGCTGTGGCTACCATCTGGACCTGTTTGTGGTGGGAGTGATGCTTGGAGTGTGTTCGGTTATGGGACTACCGTGGTTCGTGGCTGCTACCGTGCTCTCCATCACACATGTGAACAGCTTGAAGCTGGAGTCTGAGTGCTCAGCGCCGGGAGAGCAGCCCAAGTTTCTAGGAATCAGAGAGCAGCGCTTCACTGGCCTTATGATCTTCGTCCTCATGGGCTGCTCTGTCTTCATGACTTCCATCCTAAAGTTCATCCCAATGCCTGTGTTATATGGCGTTTTCTTATACATGGGGGCATCATCTCTCAGAGGCATACAGTTCTTTGACCGTCTGAAGTTGTTTGGGATGCCAGCGAAACACCAGCCGGACTTCATCTACCTGAGACATGTTCCTCTGAGGAAGGTCCACCTGTTTACCATCATCCAGCTCAGCTGCCTTGTCCTCCTCTGGGTCATCAAAACCTCCAGAGCTGCTATCGTTTTCCCCATGATGGTGTTAGCGTTACTTTTCATCCGTAAGCTGCTGGACTTCATCTTCACGAAGAGGGAGCTCAGCTGGCTCGATGACCTCATGCCTGAgagcaagaagaaaaaattgGAGGATGCACAGAAAGAGGAGAGCCACAGTGTGATGGTGGAGGATGAGGGAATTGTCCAGGTGCCACTTGAAGGGCATTACAAGGATGACCCGTCCACAGTCAACATTTCAGATGAAATGACCAAAACATCTTTTGGAAATATCTGGAAAAGCCTCAGTACTGACAACagcaaaaatgataaaagtgcAAAAAGCTCCCTCTCCTAACCTCCCAGCTGCTGACTTTCCAAAGATCTCCAGTGAAAGACATCAGGAGTGCTAAGAAAACAGAAGAGGTGAAGGACTGGAACATGGACAGGGAGACGAGTTTGTGACTCTCatgttgctttttaaaatacaaaagagAAGTATTGTGGCACCATATAGCACTAATCTACGTTTTACTGTAGCTCACTGTGTGTAACACTGCTCACACTCCATTCGACaatacatgtttgtgtgtgtgtgtgtgtgtgtgtgtgctgaatgcctgaaaatgtgtgtttgtaaaggAGAAAGCTTTGTGTGAGATCCTTTTACAGGATAAATATATTGACTTTTAGGAGTTTTACATTTGAAGCTGCTTTTGTTTTAACCTAgatgtattttttatgttttgtatttttgatgGTAGCTTAACCTTTTCAATATCCTTGTCATACAGTATGAAAGATACCTACTTCATCTATAATGAAGttgatatttaatgtattttcaaTGCAACTTCTTGAACATAAGGATTGCAAAACAgtcaggtgacaaattaaagagaaaaacaacacacagtgtCTGGTGTTGTGCCACCACGAACCGTCAGAACAGCTGCAATGCACCTTGGTCTCGATTTTACAAATCTCTAGAagtgtactggagggatgaacaccattcttatGAACGATATTCCCTCAATAGGGgttttgataatggtggtggagagcactgtctTACACATCAATCCAAAATCTCACAAAGGTTTTCAAATGGATTGCGgtctggtgactgtgaaagcCACAGCatgtgatttacatcattttccttctcatcaaaccattcagtgtgCTCTCATGCCCTAGGGATGTTGACACTGTCATTCTGGAAAAGATCACTCCCATCAGCAGAGAAATGTTTCATCCTACATTAAATGAGATCAGTCAGAATCACTTTGTATTGTATAAAACCCTACAGTTTTTCCtataatttgtcacctgtctatatattactgtaattgtgaaagcaaatgaaataaatatagatatataacattaattaaaatattttctgacaGCAAATTCTTGTCTATGATATCTCAAGTAATCCCAGTCTATGTtaataactgtatataaatgtCTGTCTGAAACTGTTAAGTATTTCATTCAGCATACTAACACTTTGCAAGGTATGCTGACACATTTCTTTGTAAAACCTTCCACAATAACGGCGaccaatatttttaaatgtacttttatgGACTGTTGTATCTTGTATAGTGTGATTTTTTGTCAGACTTCTTAGATTTACTATCCAAAAATACTGAACATAAAATCTTTACATTTTGAACATTCTACATAAGAGCTGATGCTGCATACATTTGCAAATACCGAGtaatatattttgctaaaacacTTCTAAAAACCACAATATTGAGTAATACATTTGTGTTTTGCTGTGGTCATACTGGTTTTAATGTGTAAAACCATCGCTAAGAGGAGATTCATGTTCCCGAACAAACTTATTAACACAACTGTGCAGGCAAAATACTGACAAGAGATGCAATAATCCTTTTAATAAGAGGGGCATTATATCATGTATTAACCAGAGACAAATGACCTCGAACAAATGATCTGTATGTCCAGTTGTGTATGATGTTCATGTGTAAtatgtagtaaataaaagcatttatttcaCATGCAGATAGGAATAAAATGGATGGGGATGTGTGATAGAGAATATTTCCATGGTGATTTCAACACTACTGTAATGTCTTATGTtgccattttattatttttttgtcttttttttaaagttttgtgtaaatattgaacTTAACTTACAGAATACTGGTACAGATTGATGCTGAGCGATAAATTCAGAATTGCTTATTTAAAGTCGTTTCTATTTACGATGTTAAAGGATGGCCATGTGTCTTTACACCTGTGTGACATCTTCAACAGATACGGTAATGGCACATAATCATATTGTTCATGCACAATATTTACTACGTATGTAATAAGAGGGAAATTATGTACATTTCCTTTCTCCAACATGCCATTGACATGTAACCACTGTATCAtccaaacacattaaatatttacaatttaaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219890 lncRNA upstream 676 21560167 ~ 21560379 (+) True G185751
TU219622 lncRNA upstream 72528 21488324 ~ 21488527 (+) True G185546
TU219609 lncRNA upstream 94117 21466332 ~ 21466938 (+) True G185533
TU219589 lncRNA upstream 114575 21444384 ~ 21446480 (+) True G185519
TU219570 lncRNA upstream 151263 21407479 ~ 21409792 (+) True G185503
TU220105 lncRNA downstream 414934 22020848 ~ 22021059 (+) True G185940
TU220132 lncRNA downstream 772979 22378893 ~ 22381003 (+) False pcdh17
TU220165 lncRNA downstream 775484 22381398 ~ 22381611 (+) True G185997
TU220216 lncRNA downstream 822944 22428858 ~ 22429104 (+) True G186046
TU220233 lncRNA downstream 949535 22555449 ~ 22899731 (+) True G186060
XM_026914564.2 mRNA upstream 2053 21554701 ~ 21559002 (+) True tbr1a
XM_034308416.1 mRNA upstream 8788 21532681 ~ 21552267 (+) True psmd14
XM_034308765.1 mRNA upstream 170849 21383873 ~ 21390206 (+) True lgsn
XM_026914590.2 mRNA upstream 170849 21383874 ~ 21390206 (+) False lgsn
XM_034308764.1 mRNA upstream 170849 21386972 ~ 21390206 (+) False lgsn
XM_026925444.2 mRNA downstream 5862 21611776 ~ 21615292 (+) True si:ch211-227n13.3
XM_026923268.2 mRNA downstream 10275 21616189 ~ 21622277 (+) True nxph2b
XM_026921504.2 mRNA downstream 150676 21756590 ~ 21770086 (+) True lims1
XM_026921496.2 mRNA downstream 150676 21756590 ~ 21768721 (+) False lims1
XM_026921487.2 mRNA downstream 150676 21756590 ~ 21766584 (+) False lims1
XR_004579103.1 other upstream 350516 21189786 ~ 21210539 (+) False wipf2a
TU218923 other upstream 1410161 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 1689592 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 1726641 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1860781 19695244 ~ 19700274 (+) True rps15
trnap-agg_1 other downstream 352974 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 2326952 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 2328218 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 2328721 23934635 ~ 23934706 (+) True trnaq-uug_3
trnaq-uug_4 other downstream 2331103 23937017 ~ 23937088 (+) True trnaq-uug_4

Expression Profile