RNA id: XM_026918740.2


Basic Information

Item Value
RNA id XM_026918740.2
length 4316
RNA type mRNA
GC content 0.48
exon number 18
gene id mark1
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17281249 ~ 17331250 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTGCGCGCTGCAGTTTCACCTGGAAGCGGAGCAGCCGAGCAGCAGCgcatcctccctctctctctctctctctctctctctctctttctctctctctctctctctctctctctcactctctctctctctctcctctctgtgcgGCTCCCGGCTCTCCGGCTGCGGCTCATGTCGGCTCAGCCGGGGTCTCGTTGTGCTCCTCTACGGACAGCTCCTGCCATTTTAGCGCTCAGGCCGGGCATGCCGGTGTAGAAGAGGTggcttttttcttcctctccccTCGTATCTCTCGTCCCTTCTCTGCGGCCTGAAACACAAAATGTCGACCAGAACGCCATTACCGACCGTTAACGAGCGCGACACGGAGAATCACACGTCCGTGGACGGCTACCCCGAACCCCCAGCACCTCCGGCTAAGTCGGCCAGCAGGCAGAGTCTGCCACGATGTCGCAACTCTGTGGCGTCCATCACAGACGACCAGCCTCACATCGGCAACTACAGACTGCTCAAAACCATCGGCAAGGGCAACTTCGCCAAAGTCAAACTAGCACGTCATATTTTAACAGGACGGGAGGTTGCTGTGAAGATCATTGATAAGACGCAGTTAAACCCCACTAGTTTACAAAAGcTTTTTCGTGAAGTAAGGATTATGAAGATTTTGAATCACCCTAATATAGTTAAGTTATTCGAGGTCATAGAAACGGAGAAGACACTTTATTTGATAATGGAGTATGCCAGTGGAGgcGAAGTATTTGACTACTTAGTTGCACATGGAAGAATGAAGGAGAAAGAGGCCAGGGCCAAGTTTCGACAGATTGTATCTGCAGTGCAATATTGTCATCAGAAGAGGATAGTCCACAGAGATCTCAAGGCTGAGAACTTGCTCCTGGATGCTGATATGAACATAAAGATAGCAGACTTTGGCTTCAGTAATGAATTCACCATTGGAAACAAGTTGGACACGTTCTGTGGAAGTCCCCCCTATGCTGCTCCTGAGCTCTTTCAGGGCAAGAAATATGATGGGCCTGAAGTGGATGTCTGGAGCCTGGGGGTCATTCTGTACACGCTGGTCAGCGGCTCGCTGCCGTTTGACGGGCAGAACTTAAAGGAGCTGCGAGAGCGAGTGCTGAGAGGGAAGTACCGTATCCCGTTCTACATGTCCACCGACTGTGAAAATCTACTGAAGCGACTGCTGGTGCTGAACCCAGGCAAACGTGGCAGTCTAGAGCAAATCATGAAAGACCGCTGGATGAATGTGGGTCACGAGGAGGAGGAGCTCAAACCATACACAGAGCCAGAAGCCGACTTCAGCGACACCAAAAGAATAGACCTGATGATTACTATGGGTTTCCCCAAAGAGGAGATCACTGATTCCTTAGTGGGTCAGAAATATGATGAAGTCATGGCTACATATTTGCTCCTGGGCAGAAAACCTCCTGAGTTTGAGGGAAGTGAGTCTCTGTCCAGCACAAACCTGTGTCAGATGCCCCGACCCAGCAGTGACCTGAATAACAGTTCATCCCAGTCTCCAGCTCATTCCAAAGTGCAGCGCAGCATCTCCGCCACGCAGAAACAGCGCCGCTACAGTGACCAtgTTGCCCCATCTATCCCACCGGCCGTGTCCTACACCAAGCGCACACAGGCCAACAGTGTGgagggagagaagaaagaggagtGGGAGGCGGCTCGTAAGCTCCCCACCTCCAGCTCCAAAGGAGACATGGCTGTCTCACCGCTGACCACACAAGACCGCAGGAAGTGTTCTATAGCCTCAGGGAATAGCACAACCGGAGGGATGACACGGAGGAACACTTACGTGTGTGAGCGTGCCAGCACAGATCGTTATTCAGCCATTCCTAATGGCAAGGACAGCAGtctgaCGGAGATGTCTGCCTCTGGCAGTGGCTCCTCTGTGTCTCCTGGCGCTTCCTCAGCACTGGCCTCAGCTAGGCCGCGTCATGTGAAGTCCATGTCTGCCTCAAGCCATCCCACCAAGTCCCCCTTGCCCCCAATAGAGGATAATGCAGAGTACAAGGGCCCTAGCTCCAGCGCCAGGGCACCTGCTGCATCTCCATCGACccacagcatcagcagtgtGACACCAGACCGAACACGTTTCCCTCGGGGCACATCGACCCGCAGCACCTTCCACGGAGCCCAGCTGAGAGAGCGGCGTAGTGCGACCTACAACGGACCGCCTGCCTCTCCCACGCTCTCGCATGACACGGGGGCTCTGGTCCACACTCGGAGGGGCACTTCGACGGGCATCATCAGTAAGATCACCTCCAAGTTTGTGCGTAGGCTACCCAGTGAAGGAGAGGCCAGATGCAGAGCAAACAGCTTAAGGAGCGGTTCAGGAGAACCTAAGGACGATGGGCGTGATTCTAAGCCACGATCTCTACGCTTCACGTGGAGCATGAAGACCACGTCGTCTATGGAGCCCGGAGACATGATGCGAGAAATCCGCAAGGTGCTAGACGCCAACAATTGTGACTACGAGCAGCGCGAGCGCTTCCTGCTTTTCTGCGTTCACGGCGACGCCCGTCAAGACAGCCTCGTCCAATGGGAGATGGAAGTATGCAAGCTGCCCCGCCTCTCTCTCAATGGCGTCCGCTTCAAGCGTATCTCGGGCACCTCCATCGCCTTCAAGAACATCGCATCCAAAATCGCCAATGAGCTGAAGCTGTGACCGgcattaaaaatcaaaacaggGAGCGATTCTGCCAAAAACTGCAAAATGGAAGCTTGCTACGTTGATGTCTACGTTCCCAGTCAGTTTGGGCACCATTTTGAGTTTACTGCTTTCTGAAGCTACTGCTGTATGGTTTGACCAGTGGATTTAAAAGATAagattgaggaaaaaaatgagcaTCCTTGGTATTTCCAGTTCCCTTCTTTTCTCTCAAGTCCCACATATACACAAGGTTAGCATAACCATCTTtgcaataataatgaaaacccCTGTCAGGGTCAGCAGGTTGGTGTTCCTTTACAGAACTACCTTTGTAGGCTAAAGCAGAGACTTTTAACGCTACTTTTTCCACATGTACAGTTAAGATACAGAATGTTTTGTTGAATTGTTCATAGACTTGTATAATACAAGACTCTTTCAGCCTACGTATCTGAAGGTGTTGTATAGTATTGAGTTCTGCACAGAAAATTTATGTTAAATGTCTTACTGTTTTGTTTAGCTTTTTGCTTTCCTTGTAcaattttagatatttttttgcctctgccatgtgacattttaatgattcttttatgtattttttttcacttttcaacaGGATGTAGAACCAGTAGATCAGTGGCGAGTTACTAAATAACAGTGTTTCATAAAACAGGCCGTGCACATTCCAAAGGCAAATTGTTTTAACCTGCAATCTTTTTATTCTTTCGCCCAAGTCTCAGAGTCGTGCTATTAGTTAGCAAGTTTGACACTCTGCCATTCCATGTATGCTAAAAAGGGATATAGCTTTTGAATTGATTGAATATATCGCTGTAGTTGTAGCAGATGTAGCCCAAATAGAACAGGAGTGGAACAGGGTTGGTTAAACAAGAATTTCTTTCAGCAGTTTATTTGAGTTGCATTTGATTTCATCTCATTCTCCCTGaagattttctgtttatttattatggtTTCTACACCACCTTTATTACGCTGCTTTAACTTGTCATCCTTGTGTGAAGGAAGTAGgatatgacatttttgtttttgaaaatgtactttaatTTGTTCCTTTTGTAATTAGTGATGATGGAGACAgcgatgatgatggtgatggtgatgatggtgatgtgtAAGACCACTTGTGCTGGAACATTTCCTCTTGTTCCTGTGTACTGAGGTAATGAGGGTTAAATGTGCAatgcttttttgttgtattaCTGTAATTCTGACACAAAAATGGTCCCCAACTGCACACATAACAAGAGAGAGCTcttgtttagtttgtttatttaaaactggtTTTAAAGTATCTTTCAGAGGTTTAAGCTGTGATCTGATTATGCTGATCCTTGAGGGGCATGGTGTTTCATGTTGTAACGGTACATTTCCTGAGCAGATGCTTGATTATGCTGCCTTAGAAGATGGAGCTGCTTGAAGGTGTTGGGAGAGACGGCAGACGATTTACTGAAAATGCAACTACCACCCACACCCCGTTTTCCCCCCAGTCATTTCACCACTACCGCCCCCGTACTCCCTCCAATCAGTGTAGTACTGTACATTTCTCAGTAAAGTCTCATGGGTCATAAAGGTTCAGTCTCACTGGTGCACATTAAAGCTTACTTGAAATGAGATTCGAGCCAAAA

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005576 extracellular region cellular_component
GO:0005524 ATP binding molecular_function
GO:0008009 chemokine activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08798 MARK; MAP/microtubule affinity-regulating kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216521 lncRNA upstream 146250 17121913 ~ 17134999 (+) False si:ch211-126j24.1
TU216515 lncRNA upstream 197720 17079637 ~ 17083529 (+) True G182932
TU216493 lncRNA upstream 291730 16989319 ~ 16989519 (+) True G182910
TU216484 lncRNA upstream 319950 16960659 ~ 16961299 (+) True G182906
XR_004579047.1 lncRNA upstream 424112 16852408 ~ 16857137 (+) True LOC117598387
TU216605 lncRNA downstream 77295 17408545 ~ 17411425 (+) False kcnh1b
XR_004579106.1 lncRNA downstream 85480 17416730 ~ 17423320 (+) True LOC113535983
XR_003403652.2 lncRNA downstream 85480 17416730 ~ 17423320 (+) False LOC113535983
TU216612 lncRNA downstream 85520 17416770 ~ 17423219 (+) False LOC113535983
TU216632 lncRNA downstream 119207 17450457 ~ 17450736 (+) True G183032
XM_026929441.2 mRNA upstream 3794 17240492 ~ 17277455 (+) True ptk7a
XM_026933142.2 mRNA upstream 45561 17224426 ~ 17235688 (+) True soul4
XM_026917474.2 mRNA upstream 58717 17196280 ~ 17222532 (+) True LOC113528769
XM_026916023.2 mRNA upstream 91934 17121899 ~ 17189315 (+) True si:ch211-126j24.1
XM_026916031.2 mRNA upstream 91934 17121900 ~ 17189315 (+) False si:ch211-126j24.1
XM_026922364.2 mRNA downstream 34448 17365698 ~ 17411326 (+) True kcnh1b
XM_026922372.2 mRNA downstream 34448 17365698 ~ 17411326 (+) False kcnh1b
XM_026930164.2 mRNA downstream 108572 17439822 ~ 17446248 (+) True LOC113536271
XM_026930276.2 mRNA downstream 115150 17446400 ~ 17449781 (+) True commd2
XM_026919303.2 mRNA downstream 122532 17453782 ~ 17497179 (+) True wwtr1
XR_003402991.2 other upstream 65366 17196280 ~ 17215883 (+) False LOC113528769
trnak-cuu_26 other upstream 251305 17029872 ~ 17029944 (+) True trnak-cuu_26
TU216450 other upstream 358327 16913258 ~ 16922922 (+) True G182877
TU216336 other upstream 696306 16583303 ~ 16584943 (+) True G182819
XR_003403746.1 other upstream 700946 16580236 ~ 16580303 (+) True LOC113537281
TU216628 other downstream 108546 17439796 ~ 17445059 (+) False LOC113536271
XR_004579126.1 other downstream 267214 17598464 ~ 17636395 (+) True anos1b
XR_004579060.1 other downstream 340921 17672171 ~ 17751502 (+) True mcf2l2
XR_003403373.2 other downstream 340921 17672171 ~ 17749291 (+) False mcf2l2
TU217273 other downstream 442463 17773713 ~ 17781813 (+) False ect2

Expression Profile