RNA id: XM_026918792.2


Basic Information

Item Value
RNA id XM_026918792.2
length 3463
RNA type mRNA
GC content 0.47
exon number 14
gene id ushbp1
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19781228 ~ 19796168 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTGTAATCATGGCTTCCATTAGTTACCAGATGTCTTTATCACAATGTAGAGGAGAAATTGAACCTCTTTGAATAGAGTCAGAGcagcagctagctagcaaagaggtgggatgggaaaaaaaaaaaacctcttcctGATCCGACAGCGCTGCATGCCACGAGACGGGCACTGTGTGGATCTACTCAAGCCTATAATCACACCCTGAGCAGCAGGACGGCAGCTCCTGTCCAGAAGCCTACAGCTCCactgtgtgctttgtgtgttcTTAAGCAAGGGGACGGAGGAAAAAGCGTAGCAAGAGAACCAAAATGACAGAGAGGACGGACAGCCTGGCGTGTGCTGACTCAGAGCTGGCACAGTGCGAGGCCGAGGTGGGCACTTTGCTCCAAATCATATCTGAGCTTAACGTGAAGATGGGTGCCCTGAAAATTCCACGGGATCGAAAGGACTATGAGACACAGGACCAAGGCTGCAAGCCAGTTTCAGACCTGAGCTCCAGTCCCCTGGGACCACAGAGCAGCCCAGTGGCTCATGCTGGAACAGCATCTATGGAGTCAGTCACTAAGCAATACTCAGGGGAACATGAagGGTGCAGTGGAGAGCTATGGACAAAGCTCCAGCAGGTTTTGTCCACTCTGGAGTCATCTGCTGGCCGAGGGAGAAAGTTGGTCGCCCCTCACATTCATGATGATGAAAAGACCCAGGAAAAGCATATTACTGCAGCGCATGATACCTGGGTTCAGGCCACTCAAGTATTAGAAGAAATGGAGAGGGAGCTTGGAATCTCTTACCTATCTGCATTACCCACTAAAGAGCGTCAAAAGTATCAAAAAGAGGTTCTGTCGCTGGGTAAACTCAACCGGGAGCTGAGCAGCAGCCTGCAGAAACGTCAAGAAGATCAGAAGAAGATGGAAAGAGCCATtctggagatggaggaggagaagaaaagactTCGAGAGAAGTTGGACgagctgaaaaacaaatggCTGATTACAGCTAGTTGTTCTCCTCCCAGAAGTCCATCCTTGTCCTTTAGTAGGACCCCAAGCCCCTGTTGGGCATCTCCTACGATCCCTGCGTCTCCTCTTTTCTCGCGTAGAATGCCCATCTCACCCCCTGGCTCACCATCCAGACCATCAAGATCCAGTTCTGGCAGCTCAGTTCTGGAAACCGAGACAGAGCGTCTCCAGAGGTCTTTGGAAAGACTGAAGGCAAGAAATGAGCGTCTGACAGCAGCTCTAGAGAGACGGAAGAGCGAGTCAGAGCAGGTCAGCATGGCTCTGAGCCGCCACGAGGCTGACTGCTCAGCGCTGCAAATGGCTCTCACATACTGTGAAGAATGTGAAGAGGCATACAGTGATCTTTTTTCCCTGTATGAAGCCAGGAAACAACAGAATGCTGCGGTAGCAGAGCCGTCTACTCCAGAACAAACTGGCAATTTGAATACTGCTAATGAGGAGTCATCCTGTACAACAGTGACCGCCCAGAACAGttTGTCTACAGAGGAGTTTGAAGATAAGACTGGAGTCATTCTGCAGAAGATCTCCCGTTTGAAGCAGGACAGGGCAGCAGTGTGTATTCCACAGGAGACCAGGACAGGAGAAGGGAAGCTTAGCCCTGATACAGGCACGCTGGCTGGAGCGAGGAGGCTAAGCTTTCTGTCCTCAAACAACCccaaagaagagaaaacagcACTGCTGTATGAGCTAGTCAACGTCAGGGAGGAGATGTCTGAGCTGCGGGGACTCATCAGGCTGAAGGAGAAGGAGCGGCGCTCTCTGGAGTTTTCTCTGGTGGCCCATAGGTGTCAGGACTCAGCTGGGGCTGCCATGGCACAGAGCCTGCGAGCGGAGCTGGAGGACAGGAGAGCAGAACAACAGAGGATAGATGAGTATCGGGCCAAGCTGGAGAGTGGAGCGGGAATTCCTGGGCCACGGAATCATATCCTCATGAGAGAACTTCAGGCGATACTACAAAGGGAGCAGACACTGAAGAGGAGAGTGATATCTTTGCGAGAGGTGTTGGACACAGCGATGATGGACAGCACCACACAGAGGAGAGTTAACAAGGAGGAAGTGGCCCGCCTCCTGTCCTGTCACAATAAAGCCATGAGTGCATGCAGGAGCGCTCGCAAAAAGCACCACGAGCAGCTGTGGAGGATCGAGCGACAAATGACAGCCATGCAGGAACGTCACGAGTCTCAACTGGCTGAACTAAAAACAACGCTGGAGACgctggagtggaagaaggaGGAGACAGTGctctaaaacacattttataaactGGAATATAAcctcagtaaaaatattttagtattcTATGTAACTTAAGTTCCAGAGGGCAGATTAGAGCAGAGGACACTTTTAGGTCACAATGAAAAGTTTCATTTAGGTGTTTGAATGAAAATACTTTGCTAATTTATTTGCAAAGCAATGACTTAAGTGTCCTTTAAACTTCTCTGTATAAACCACCCTAGGGCTAATGAGTTTCCTTTTTACAAGCCATTCTGTGATATTATTAGCGGCATATAAGCTTGCTCATTTAAGAGAGTCTTTGTGGGAATACTGGGATGAACAGATCGCGAGAAAATGGGAGCAGTGTTTACCAAAGGTCATGTATTTTTCTGCATGCAAAAAACCACGCTCCCTGCAAAGATCTGGCCCTTCGCTTCAGTCAAACAAAAGATGAAAGACAAAAGAGGCTGAACGTAGAGGATCTCAGCTTGGCCATTTGTCTCCTCCTTTTACTGAGTCCACCTTTTTTAAGACTGCACGCTCCCAACCCCCAGCCTCGAGGCAGTCGGCCGCAGCTGTGAATGCCAGTCAGAAGGTTGAGGCAAAGGTTGAGTGTCACACCCCCAGGGGTCAAAGGGCAGCCTGTACCGTTGTTGAAGCCTGTGAATGTAGGGGTTACGAGGCCATGCTTAACTGAGACTCTAGCCTGAGCTGGAGATAAAGAAGATCAGAGGGATGGATGACCGAGTCTGCTCCATGTGCTGCACTGATCATCCTAATGATAATGAATCCTGAGTGCAGCAATTATTCTCAATCTTATCTAATGATGTTTTATAGATGTAAGATTTAAGGCTGGgcatatgatgatataataatgatatCACTTTTCTGTAAGATTGTGATATCTTTtagtacaatttaaaaaaaacaattactaaCTGATTGGAAGGATTTGAGTTGGTTCCTGCATTTTGgcttaaatgtatttttgtatacaTTATGTAAAAGTATTATTAGACTCAGTTTTTCACAGTTTCTTTAAATGCTACAAACACTATAGTTTTTCTGGAGGTTTCCTAGCAAACCTGCTGTCTTTGAATGTCTTTGagaattctgttttttttgatAATGATGTAACACCAAATGTCAATTATGCAAACTTCATATCAAATGTAATCTCACATACTGTGAACAGTATTTGATATAAAGAGCAACCATGCAAACTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218615 lncRNA upstream 79484 19703635 ~ 19704250 (+) True G184718
TU218499 lncRNA upstream 119243 19661092 ~ 19664491 (+) True G184617
TU218491 lncRNA upstream 181095 19548663 ~ 19602639 (+) True G184614
TU218741 lncRNA downstream 12545 19808713 ~ 19809254 (+) True G184823
TU218759 lncRNA downstream 47879 19844047 ~ 19844800 (+) False LOC113534304
TU218810 lncRNA downstream 125303 19921471 ~ 19947483 (+) True G184882
TU218828 lncRNA downstream 158426 19954594 ~ 19955040 (+) True G184900
TU218933 lncRNA downstream 468768 20264936 ~ 20265620 (+) True G184988
XM_034308633.1 mRNA upstream 19683 19746882 ~ 19764051 (+) False gtpbp3
XM_034308632.1 mRNA upstream 19683 19746883 ~ 19764051 (+) True gtpbp3
XM_026930531.2 mRNA upstream 86028 19695227 ~ 19697706 (+) False rps15
XM_026916854.2 mRNA upstream 91954 19676220 ~ 19691780 (+) False dazap1
XM_026922981.2 mRNA downstream 3488 19799656 ~ 19808358 (+) False nr2f6b
XM_026922974.2 mRNA downstream 3490 19799658 ~ 19808358 (+) True nr2f6b
XM_026928996.2 mRNA downstream 31819 19827987 ~ 19834414 (+) True tax1bp3
XM_026927006.2 mRNA downstream 39977 19836145 ~ 19845238 (+) True LOC113534304
XM_034308398.1 mRNA downstream 39977 19836145 ~ 19845238 (+) False LOC113534304
TU218602 other upstream 83460 19695244 ~ 19700274 (+) True rps15
TU218488 other upstream 230212 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other upstream 230212 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218227 other upstream 514512 19254957 ~ 19269222 (+) False adgrl4
TU217312 other upstream 1987115 17795445 ~ 17796619 (+) True G183549
XR_004579107.1 other downstream 31818 19827986 ~ 19834414 (+) False tax1bp3
XR_003403385.2 other downstream 69630 19865798 ~ 19871463 (+) True ccl44
TU218923 other downstream 353803 20149971 ~ 20150894 (+) True G184979
XR_004579103.1 other downstream 1393618 21189786 ~ 21210539 (+) False wipf2a
trnap-agg_1 other downstream 2162720 21958888 ~ 21958959 (+) True trnap-agg_1

Expression Profile