RNA id: XM_026919028.2


Basic Information

Item Value
RNA id XM_026919028.2
length 3394
RNA type mRNA
GC content 0.54
exon number 26
gene id rabgap1l
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 15170561 ~ 15285798 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCACACAAGAGGAGGCGGGATTTCCCCAATACGGGTAGGAAAACAAGGTGTTTTCTGGATGTTGGATATAAACCGGACTGCTGACAGACATTTCAACGCAAAACTCCGAACAAGACAGTAACAGAGGCGGGGCCCGAGGGAGGAGCGTCCCTGGCTATCATGGATGACCGCTCGTCCCTGCGTAAAGTGAGCGGCTCCACTGAATCCGTGTCCACAGTCACCAGCGAGGAGTTTGTGCTGGTGCAGAACGGCGCCGAAGGCTCGCCATCCAGCTCAGAGGGACGTCCCAGACTCAAGATGTCTTGGAATGGAAGCGAGCAGTTGGAGAGGGCCATGGAGGAGGTACTGGAGGATGAATTGAGGACACAGGAGAGGAGAACGGGGACACCAGTGGAGCCTGGAGAGAACGTGCAGGACACAGGCATGTCCACAGAACCTAAACCACAGAAAAGACCACCTAGCCTTGCTCTCAGTATGACATCTAACGAAGCTTCCATAACTCCAGTGGGTAGTCCGGTGGTGCAGGAGGAGGAGAGTGTGCAGTTCAGTAAGCTCTCTTACCTGGGCTGTACGTGGGTGAAGGCTCCACGCAGTGAGACTGAGGCCCAGAAAGCAATGTCCACCCTGAGAGCTGAGAGCCCCAGTCCCATCCCAATCACCTTGCATGTACCCAACAATCCGGACGGCTGTGTGAGGATTGTTGACCAGGCCACTGGCACAGAGATTGCCTCCTTCCCTATCTATAAAGTGCTGTTCTGTGCCCGAGGGAAAGATGGCTCCTTGGAGAGTGACTGCTTCTGCTTCACTGAGAGCTACCGCAGCTCTGAGGACTTTCAGATTCATGTCTTCTCCTGCCATATCAAAGAAGCTgTGAGCCGGATTCTCTACAGCTTTTCCACAGCCTTCAAGCGTTCATCTAGAGCTGCTACAGAGATCCGCGAGTCGGCATTGCCTCAATCCCCTGACAGCGACATCTTCTCCTTCACCGTGTCCCTGGAGGTGCGAGAGGACGACGGCAAAGGCAACTTCAGTCCTGTTCCTAAAGACAGAGACAAGTACTACTTCAAGCTGCGGCAGGGTGTGCAGAAGAAGGTGGTGGTTACAGTGCAGCAGATCTCCAACAAAGAGCTGGGAATAGAGAGATGTTTCGGCATGTTGCTCAGTCCTGGGCAGAAGGTTCGGAACAACGACATGCACTTATTAGACATGGAGATGATGGGGAAGAGTGCAGATGGAAAGGCTTACGTGATCACTGGTATATGGAACCCTAACAACTCTGTGTTTCAAGCCCTCAATGAGGATACACCGAAAGATAAGCAGGTGTATATGACAGTGGCTGTGGACCTGGTGGTGACAGAGGTGGTGGAGCCTGTTCGATTCCTGATGGAGGCCTTGGCCCGGGTTTATCCATCCAATGAGAGGTTTTGGTACTTCAGCCGAAAAGCCTTCTCTGAGACCTTCTACCTGCAGCTCAAACCGggcTTGGAGAAGTGCAGCCAAGGAGATGCCATATATGAAGTAGTGAGTCTTCAGAGGGAGTCGGAGCGAGTGGGAGGATCACGAGGCCGCTTGCAGTCCCCTACTGAGGAAGAAGAGCCAGAGGAAGACAGCGACAGTGAGATTTCCAGTGGCACTGGTGATGTGTCTAAAGACTGTCCTGAGAAAATTCTGGAGTCCTGGGGTGGCATCCTCAACAGATGGCATGGGAACCTGTCTTCTCGTCCTAAAGGGCTGTCTTCGCTGGTGAAACCCGGCATCCCCGAGGCCCTGCGAGCCGAAGTCTGGCAGCTCCTGTGTGGCTGCCAGGACGAACAGGCCCTTCTGGAACGCTACCGCATCCTCATCACTAAGGACTCACCACAGGAAGGTGTCATTACCAGAGACATCCATCGCACCTTCCCCGCTCACGATTACTTCAAGGACTCAGATGGTGATGGCCAAGATTCGCTCTACAAGATCTGCAAGgCTTACTCCGTGTATGACGAGGAGATTGGATATTGCCAAGGCCAGTCCTTCCTGGCTGCAGTGTTGCTGTTGCATatgCCAGAGGAGCAGGCGTTCTGTGTGCTGGTGAAGATCATGTATGACTACAAACTCAGGGATCTCTACAGGAACAACTTTGAGGATCTACACTGCAAGTTCTACCAGCTGGAGCGCCTGATACAGgaGCAGCTCCCAGATTTGTGGTCTCACTTCCAGGATCTGAATCTGGAGGCTCATATGTACGCCTCCCAGTGGTTCCTGACCCTCTTCACTGCCAAGTTCCCCCTCTGCATGGTCTTCCACATCACCGACCTGCTGCTGTGTGAGGGCCTGAACATCATTTTCAATGTGGCACTGGCTCTATTGAAGACCTCCAAGGAGGACCTGCTTCAGGCTGACTTTGAGGGTGCTCTTAAGTTTTTCCGGGTTCAGCTCCCCAAACGCTACAGAGCAGCTGAAAATGCTCGCAGACTCATGGAGCAGGCCTGCAACATCAAGGTGCCAACTAAGAAGCTAAAGAAGTTTGAGAAGGAGTACCAAGCTTTCCGAGAGAGCCAGCTGCAGCAGGAGGACCCTATAGACAGATACCAGAGGGAGAATCGGCGGCTGCAGGAAGCCAGCATGCGTTTGGAGCAGGAGAATGATGACCTCGCCCACGAGCTGGTCACTAGCAAGATTGCACTGAGGAACGATTTAGACCAGGCGGAGGACAAGGCCGACGTGTTGAACAAAGAGCTGCTGAGCACAAAGCAGCGGCTGGTGGAGACggaggaagagaagaggagacagGAGGAAGAGACAGCTCAGctgaaggagGTGTTCAGAAGAGAGTTGGAGAAAGCAGAGTCTGAGATTAAGAAGACCACAGCCATCATTGCTGAGTATAAACAGATTTGCTCTCAGCTGAGCACCAGGCTGGAGAAACAACAGGCCTCCACCAAGGAGGAGCTGGATATTGTGAAGAGTAAAGTGATGGCGTGCGAGCGATGTCGGGAAGTGTTCAGTAAGGACGGGCCCCTGCACGTCCCCGCAGTGACACAGGACAACCGTGATTCAGACCTGGATGAGGAGAAGGACTCTCTGAAGGCTCAGCTGCGGGAGCTGGAGCTGGAACTGGCTCAGACCAAACTGCAGCTGGTGGAGGCCAAGTGCAGGATCCAGGAGCTGGAGCATCAGAAGGGAGTGCTGATGACTGAAGTCCAAGCTGCCAAAAACTCCTGGTTTAGTAAAACCCTGGGGTCCCTGAAGACTTCAGCAAGCAGTCAGGCACCTCCCTCACCCAAAGAGGGGCAATAGGACTCATACAGGCCTCAGCCAGCGAGGCAGGAGCAGATCCACTGCCTGGCACTTGCATGGGAATGACAAGGCTGTCTGAACACTACTAAACTCTGTGTGGTAATGCAGTATTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214970 lncRNA upstream 84241 15085901 ~ 15086320 (+) True G181632
XR_003403448.2 lncRNA upstream 168328 14994688 ~ 15002233 (+) True LOC113533733
XR_004579076.1 lncRNA upstream 168328 14994688 ~ 15002233 (+) False LOC113533733
TU214923 lncRNA upstream 193010 14960885 ~ 14977551 (+) True G181599
TU214912 lncRNA upstream 239699 14867927 ~ 14930862 (+) True G181588
TU215238 lncRNA downstream 7440 15293238 ~ 15294067 (+) True G181851
TU215210 lncRNA downstream 13450 15299248 ~ 15308946 (+) False G181824
TU215211 lncRNA downstream 18538 15304336 ~ 15308946 (+) True G181824
TU215365 lncRNA downstream 86960 15372758 ~ 15372970 (+) True G181944
TU215366 lncRNA downstream 87422 15373220 ~ 15383177 (+) True G181945
XM_026925560.2 mRNA upstream 4663 15151021 ~ 15165898 (+) True fam163a
XM_026912512.2 mRNA upstream 22189 15132007 ~ 15148372 (+) False tdrd5
XM_026912494.2 mRNA upstream 22189 15132007 ~ 15148372 (+) False tdrd5
XM_026912503.2 mRNA upstream 22189 15132287 ~ 15148372 (+) True tdrd5
XM_026913059.2 mRNA upstream 44437 15115050 ~ 15126124 (+) True axdnd1
XM_026934668.2 mRNA downstream 235460 15521258 ~ 15528248 (+) True hapln4
XM_026912651.2 mRNA downstream 376687 15662485 ~ 15665726 (+) True nr2c2ap
XM_026912664.2 mRNA downstream 383000 15668798 ~ 15673445 (+) False borcs8
XM_026912680.2 mRNA downstream 383000 15668798 ~ 15673445 (+) False borcs8
XM_026912688.2 mRNA downstream 383000 15668798 ~ 15670207 (+) False borcs8
XR_004579090.1 other upstream 458834 14708927 ~ 14711727 (+) False pdzk1ip1
XR_004579085.1 other upstream 523739 14622543 ~ 14646822 (+) True si:dkey-121a11.3
TU214729 other upstream 575946 14589919 ~ 14594615 (+) False ankrd29
TU214656 other upstream 607595 14561690 ~ 14562966 (+) False LOC113540185
TU214440 other upstream 996343 14165026 ~ 14174218 (+) True G181175
TU215983 other downstream 969265 16255063 ~ 16255852 (+) False LOC113532318
XR_003403746.1 other downstream 1294438 16580236 ~ 16580303 (+) True LOC113537281
TU216336 other downstream 1297505 16583303 ~ 16584943 (+) True G182819
TU216450 other downstream 1627460 16913258 ~ 16922922 (+) True G182877
trnak-cuu_26 other downstream 1744074 17029872 ~ 17029944 (+) True trnak-cuu_26

Expression Profile