RNA id: XM_026920038.2


Basic Information

Item Value
RNA id XM_026920038.2
length 1545
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC113530200
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20881535 ~ 20887344 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGAACGCCTGCAAGTCCTGACCACGTGACAAGTAGCTCCGCGCTGATTGGCTGTAGAAGCTGGGCTCTGCCTACGGTTCAGTGCTCCGGTGTGTGCTGCTGTGAAGGCTTTCACTTGCGCATCTGAAGACAAAGCAGCCATGTGGATGTACTTATTGGCTTTGGTGGTCCTGTACTATGTGGTGCGCTGGTTCCGTGAGCTGGAGAGAGTTCCAGACAGAGGGAGTAAGTACGTTTATATCACTGGCTGCGACTCCGGCTTCGGGAACCTTCTAGCACGCCATCTGGACAAGTGTGGATTCTGTGTGGTGGCAGCATGTTTTACAGAAAAGGGTGAAGAGGAACTGAAAAAATCCTGCTCAAGCAGAATGTCAACAGTCCATCTGGATGTCAGAAAGCAGGAAAGCATTGAAAAGGCTGCAGCCTTCATCAAGGAGCTAGTGGGGCAGAAAGGTCTGTGGGCCGTGGTCAATAACGCGGGGGTCTCTATTCCCTCGGGTCCCTGTGACTGGTTGACCCTGGAAGACTACAAGTCCATGCTGGCTGTCAATCTTGATGGAGTCATTGGTGTGACCCTGAGTGTCCTTCCTCTCATTAAGAAAGCCAGGGGACGTGTGGTTAACGTGGCCAGTGTGTTTGGCAGGATCACGCCAGTTGGAGGACCCTATTGTGTGTCCAAATATGGTGTGGAATCATTTAATGACAGCCTCAGGATATGTATGCACCCATTTGGAGTGAAAGTCCTGTGTATTGAGCCAGGTTTCTTTAAGACCAGTGTGACGGACACTGATTTGCTAATCAGAAATGTTAAAATGCTCTGGGAAAGATTGCCAAAGGAGACAAAAGATGACTATGGAGACAATTACCTAAGCGAAGTGGAAACAATGATGAAAAAGAAGCTATCCAAGATGCCAGATGGTGACTTGATGAAGGTTGTGAGCTGTATGGAGCATGCCGTCTCAGCCGTGCGCCCTCGCACCCGTTACTCCCCTGGCTGGGATGCTAAATTTTTCTGGCTGCCGCTGTCTTATGCCCCGACCTGTATTTCTGACTATGTGCTACTTAGAGAAATCATCAAACCTGCCAAAATGGTGAATTAGACTGATGCGCTAAGCTACAATAAAGTCCAATATTTAGACAATGAcatgtttgtttagttttgtactctagcagggatggacaaatcagtagcctgggcACCCGGGACACACAGATTTCTATTTCTATcactattagttttttatttgtggTTACGTAGGGGCCAAGTAGATTTAACaaccagaaaaataaaaataaacatacttCCTATTGAAAACATAATTCCGTCTTCCTATTGAGAAGTTTTCATTTGATATGTAGATGCAACATACCTCAATACTGAATCTTACTGCCTGTTGCAGTACATAACCAAGGATCAGGTATTTACTAAACAGACaggtacaatggatataaaacgTCTACACACCCTGATAAAATGGctttttgtgattaaaaaaaaaaaaatgaaaccagtgAAATCATGTTAGAactttccaccctcaatg

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K13369 HSD17B6; 17beta-estradiol 17-dehydrogenase / all-trans-retinol dehydrogenase (NAD+) / 3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219189 lncRNA upstream 173508 20705994 ~ 20708027 (+) True G185206
TU219165 lncRNA upstream 313243 20568076 ~ 20568292 (+) True G185182
TU219046 lncRNA upstream 326411 20554856 ~ 20555124 (+) True G185092
TU219010 lncRNA upstream 374855 20506477 ~ 20506680 (+) True G185063
TU218982 lncRNA upstream 444948 20435795 ~ 20436587 (+) True G185037
TU219346 lncRNA downstream 2903 20890247 ~ 20896461 (+) True G185330
TU219404 lncRNA downstream 77191 20964535 ~ 20967901 (+) True G185381
TU219446 lncRNA downstream 115484 21002828 ~ 21024560 (+) True G185418
TU219472 lncRNA downstream 171720 21059064 ~ 21060228 (+) True G185436
TU219486 lncRNA downstream 189831 21077175 ~ 21084699 (+) False G185439
XM_034308487.1 mRNA upstream 41946 20806331 ~ 20839589 (+) False mast3b
XM_034308489.1 mRNA upstream 41946 20806331 ~ 20839589 (+) False mast3b
XM_034308490.1 mRNA upstream 41946 20806331 ~ 20839589 (+) False mast3b
XM_034308491.1 mRNA upstream 41946 20806332 ~ 20839589 (+) False mast3b
XM_034308488.1 mRNA upstream 41946 20806525 ~ 20839589 (+) False mast3b
XM_026912456.2 mRNA downstream 45398 20932742 ~ 20947791 (+) False elovl1b
XM_026912465.2 mRNA downstream 45868 20933212 ~ 20947791 (+) True elovl1b
XM_026912474.2 mRNA downstream 47645 20934989 ~ 20947791 (+) False elovl1b
XM_026920807.2 mRNA downstream 81391 20968735 ~ 20989421 (+) True chrna4b
XM_026920815.2 mRNA downstream 95688 20983032 ~ 20989421 (+) False chrna4b
TU218923 other upstream 730641 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 1010072 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 1047121 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1181261 19695244 ~ 19700274 (+) True rps15
TU218486 other upstream 1328013 19550382 ~ 19553522 (+) False si:ch73-40i7.5
XR_004579103.1 other downstream 302442 21189786 ~ 21210539 (+) False wipf2a
trnap-agg_1 other downstream 1071544 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 3045522 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 3046788 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 3047291 23934635 ~ 23934706 (+) True trnaq-uug_3

Expression Profile