RNA id: XM_026920401.2


Basic Information

Item Value
RNA id XM_026920401.2
length 1755
RNA type mRNA
GC content 0.37
exon number 4
gene id pdzk1ip1
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14708927 ~ 14711727 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGACTCTCCTGGTCAGTCTGAGGCACTGACAATAGAACGCTATCGCATGTAATTGGTGTATCATGTTATAGACCATAACTATTGATTTAACACTTCATTTCATTCTGTAGTATTATTTCAGAAAAGATCTAAAATGGGAAAAGCTGTCCAAGTGCTTTACTGCCTGTTGCTGATGCTGGGCATTGTAACAGCACAAGCAGGGGGTGTTGAGCGAGCTCTACCAAACTGGCTCACTGGCATCATCGCTGTTGCTGTGTTTCTCTTCCTGGTCTTTATTGCCTTCCTTGTCAACAAAGCCTGGTGTGAGGACTCAAGCCAGGCAGAAAACGTCAGCGTAACAGCCAACGAATATGCCATGACCAATGGGTCAAACACAAATCTTGATTCAGTCAGGAGTGATGAGCACTACGATGCTTATGAGAATGTGATTTTTCACAAATCTGAAGAAAACGTGACAGCCATGTGAATCTGGGAAAATGGTTGACAGTCCATGCAGTGTGGCATCCATTTAAACCAGACGTAATCCACCGatgttaaacatttcattaatgtttctcttgcacttttatacacttacacacatttatgtatatacacatatgggacaatttcaaataaatttgttaCCAGTCATCACACTATATGCTAATGGGATCAGTAGGCTGAATAACCATAAGCAAAGGTTAAACACATGAACGCATTTATATGAATGTaaattgattttattcattatttctctGTAGAACTGGAATTGAATGCAAGCTGCTGAAATCCTGACTCATTTACAGATACTACACTGGCTAGTACAGCCATATAGATTCCTGAATTGCTCCTAggagaaatatgaaaaaacCTGACATTCCGCACCAAATCATAGGAACCCTTGCCTGCTTAatgttctcaaaacagtgaacatAGCTACAAAAATTCAGTCATTCTTTAGCATTTTCTACAAAACTAATAATGTCAAATGTTCAAATGATGTAATGTGTTTTAGAGCAGAGATTCTCAACTACAGTCCTGCACGGTTCTAAGGTTTACCTGATACCAAAACACCTGATCTGACTTACAAGTGTGACTGACAAGTGTTTAATATGAGGTAGATCAAACATCTTTACAGTTAGTATTAGTTCCtgatatcacttacattattgcagctttaaacagttgctccctcaacagcatctctttttttatctttcctGAAGCAGTAAGATgaaaatgcagcctgtcattttacagGGAAACTGCCAAGTGCAAACTCCTGTGCTGAAGACTCTACAGtagaagaaaatgtaaagttacagatttacctctgactgttacaaagtgctgacagcGAAGACTCCAAAaacgctaaataaacatctccttatagaaaataattacacatccatttaaatccatttatgtggagcatctgtcaTATAAGTCCctaactgttactatagaaatgataacatataaTAATGAGTGCATTCaaataaaccttgcagccagaactattgtctGAGTCATGTTAGAGAAaacgaatcaacaccttctgaccaatcagaactgaatATTCAACTCCCCTTTGGTATAAATGATGTAAGTGTAAATGAATAAAGCGATTAAGTGGGTAAATGTAGATATCAGGTTTATTAGATCATCTCTCATTATCTAACATAATGAATCTTGACATGGTTTCTTTGGGATTACATGATCATTTCACAAAGACTGACCAATAAACTAAACATTTCCAGTTGAATTAA

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214795 lncRNA upstream 43863 14664701 ~ 14665064 (+) True G181475
TU214730 lncRNA upstream 59301 14647615 ~ 14649626 (+) False si:dkey-121a11.3
TU214732 lncRNA upstream 85956 14622636 ~ 14622971 (+) False si:dkey-121a11.3
TU214585 lncRNA upstream 270918 14437375 ~ 14438009 (+) True G181300
TU214531 lncRNA upstream 298850 14409722 ~ 14410077 (+) True G181252
TU214912 lncRNA downstream 156200 14867927 ~ 14930862 (+) True G181588
TU214923 lncRNA downstream 249158 14960885 ~ 14977551 (+) True G181599
XR_003403448.2 lncRNA downstream 282961 14994688 ~ 15002233 (+) True LOC113533733
XR_004579076.1 lncRNA downstream 282961 14994688 ~ 15002233 (+) False LOC113533733
TU214970 lncRNA downstream 374174 15085901 ~ 15086320 (+) True G181632
XM_026928780.2 mRNA upstream 4839 14696583 ~ 14704088 (+) True tal1
XM_026917034.2 mRNA upstream 36197 14670881 ~ 14672730 (+) True ier5
XM_026920060.2 mRNA upstream 59242 14622543 ~ 14649685 (+) False si:dkey-121a11.3
XM_034308982.1 mRNA upstream 97362 14600430 ~ 14611565 (+) True LOC113527219
XM_026927929.2 mRNA upstream 108948 14589880 ~ 14599979 (+) True ankrd29
XM_026945146.2 mRNA downstream 126770 14838497 ~ 14849100 (+) True tm2d1
XM_034309004.1 mRNA downstream 338455 15050182 ~ 15075928 (+) False frem1b
XM_034309001.1 mRNA downstream 338462 15050189 ~ 15079767 (+) True frem1b
XM_034309000.1 mRNA downstream 338462 15050189 ~ 15079767 (+) False frem1b
XM_034309003.1 mRNA downstream 338462 15050189 ~ 15079767 (+) False frem1b
XR_004579085.1 other upstream 62105 14622543 ~ 14646822 (+) True si:dkey-121a11.3
TU214729 other upstream 114312 14589919 ~ 14594615 (+) False ankrd29
TU214656 other upstream 145961 14561690 ~ 14562966 (+) False LOC113540185
TU214440 other upstream 534709 14165026 ~ 14174218 (+) True G181175
TU214157 other upstream 1212942 13495590 ~ 13495985 (+) True G180936
TU215983 other downstream 1543336 16255063 ~ 16255852 (+) False LOC113532318
XR_003403746.1 other downstream 1868509 16580236 ~ 16580303 (+) True LOC113537281
TU216336 other downstream 1871576 16583303 ~ 16584943 (+) True G182819
TU216450 other downstream 2201531 16913258 ~ 16922922 (+) True G182877
trnak-cuu_26 other downstream 2318145 17029872 ~ 17029944 (+) True trnak-cuu_26

Expression Profile