RNA id: XM_026920807.2


Basic Information

Item Value
RNA id XM_026920807.2
length 3364
RNA type mRNA
GC content 0.46
exon number 7
gene id chrna4b
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20968735 ~ 20989421 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAaacttctctcctctcctccagcTCATGTATAATTACGTTTGGTTGTGATGGGAGTGCCTGGAAGGACTGGGCCATCCAAGCAAATGAAGTCTGGTCTGCTGCTTACAGAGCTGCTTGCATTCACAGAACTCCCCAGAGCGCTAAACCTCCACCTATGTTCTGGTCCATGTTTCTGACATGGACTGTGGAATCTCTGTGCCAGCAGGAAAAGACGCTTCAAAACAGCCTTGCGCAGAAGTATGTACACCCATGGGTCAAGAATCTGGTTCCATGTGGCCAGTCGCACAGTCAGCAACAGacataCAAGACCTGACCAACCGGGATGAATCCAGCCAGGAGCGTCCAGCTAATCCTGATCCTCTACCTCCAATGCATCTACGTGTGCACACCTGCCCCGGCTCATGGTCATGCAGAGGAGAGACTACTTCAGGTTTTATTCCGTCGCTATAACAAGCTCTCACGTCCTGTAGAGAACATCTCAGATGTGGTGCTGGTCCACTTCGGCCTTTCCATCGCACAACTCATTGATGTAGATGAAAAGAATCAAATGATGACCACCAATGTTTGGGTGAAACAGGAATGGAGCGATTACAAGCTGCGCTGGAACCCTGAGGAGTTTGAGAATGTCACCTCCATCAGAATCCCCTCCGAGCTCATCTGGAGGCCTGATATTGTGCTCTACAACAATGCTGATGGAGATTTCGCCGTGACCCACCTGACCAAAGCCCAGGTGTTCCACGATGGCAGAGTCAAATGGAAGCCTCCTGCCATATATAAGAGCTCCTGCAGTATTGACGTCACGTTCTTCCCTTTCGATCAGCAGAACTGTAAGATGAAGTTTGGCTCGTGGACGTATGACCGAGCTAAGATCGACTTGGTCAGCATGGACAGCAATGTGGACCAAATGGACTACTGGGAGAGTGGTGAGTGGGTCATCATCAACGCTGTGGGAAAGTACAACAGCAAGAAATATGAGTGCTGCACAGAAATCTACCCAGACATCACATACTACTTCATCATCCGCCGGCTCCCTCTGTTCTACACCATCAATCTGATCATCCCATGCCTGCTGATCTCATGCTTGACCGTGCTTGTGTTCTACCTACCATCGGAGTGTGCTGAGAAGATCACGCTGTGCATATCGGTGctcctctcactcactgtcttcCTGCTGCTCATTACAGAAATCATCCCTTCCACCTCGCTGGTCATCCCACTCATCGGTGAGTACCTGCTCTTCACCATGATCTTTGTCACGCTTTCTATCATCATCACCGTGTTTGTGCTGAACGTGCACCACCGCTCATCCCGCACGCATCGAATGCCTCATTGGGTCCGCCAGCTCTTTCTCCACCTGGTCCCGAGATACCTCTTCATGAAACGTCCACCCGCTGCTGGAAAGAGGAACTGCCGCAAACTCATTGAAATGATGCATAGGCCAATGGCACTGCAGCCCATCCAGCAGGGCAACCCCACCTTGACCATGCCCCTCGATCTGGCCATGGTCTCTGCTAGCTCATCATGTGCAATGCACCGAGAAGCAGCATCCAAATCTCCTCTTTTCTGCAGCTCCCCCAGTAGTCAGTACTCCATCCTTCAAGAGGAGCCCACACACATGAACCTCACTCCTGGACTCACATGCACTCAAGTGAACACTTCCTCTACCTCAAGCCCTTCTTTGTCTCCAGATGCACCCCTTGGGCCTCTGCTTCAAACGTTAGCTCTCAGTGAGGTTTGTGAATTTCAGTGCCACAGTGCTGAGAGTGTATTTGTGGATACCACAGAAGGTACGCATGAGACAGGAACTCTTTGGCACTGTCATAAGCATGAGGAGACAAGTATAAAGACATACGTCACTGCAGATAGAAGTGAAAGTACAGGTTCATGTATAAGACACAAGGTCCGGGGCACTCAAATCTCAAGCCCCAGCTGTAGTAAAGAATCCAAGCTGGAGGAAACTGAGTTTCCAGTGTCACAGTCACTCCTGCGGGCCCTCGAGGGAGTCCAGTACATCGCCGACCATCTCAGAGCTGAGGATTCAGACTTTTCGGTAAGAGAAGACTGGAAAtatgttgccatggtgattgATAGAATATTTCTCTGGATGTTTGTGCTGGTGTGCATTTTGGGTACAGCGGGACTGTTTCTGCCTCCTTGGTTGGCTGGAATGATCTAGAATCTGACACTGAGCTCAGCATTGAACAAGAAACCTGCCAAACACTTTCAGTGTCCTCATCCAGATCCACTGTTTTTGACTGTACAAATATCTGCAATATCATAATATCACATTCCAGAGTGGCCAATGTAACGATGAAGCATTTTTTCAAGGTCAGCTTATATTTCCTTGAAATGCTTTCAAGGCACAAAATGGTTTATTCCTGTCCTTTCAACAAAGGCCAGTTTCTGTTGCAAATAAGCTGCTGTGCCTTCTTCTGAAACTTTCCTTCATTTGTGTATTATTCCCTTTAAATTCACGCTTTAAATCTGTGCCAATTATAACCACATACCTTCATGCCATTTGTTATATATTAAAGGATCTGCTACAAAACTAGatgaataaaattttacatACTGACAGCATAAAAGCAATTCATATTGAAATTTATTTAGAATAATCTAGATATTCACGTGCCATATTtgtactgttgtgtttttcgCAGGGAGGCgtaaataaatgattcaatGGAATAAATTCACTGGGCATCCATGTTACCCTAGAGCTCTATTTGTCATCTCTGTCTAAACAGATTGTGAGAAATAGCCTTCTGCTCTATCTGGTGGTGATTATAGCACAATAGATACTGACAGAATACACCACCAGATTTTGTCCACGTACACACACAATGGCAGGATGTAGAGATAAGCTTCTGTGCCACAGTTCATGCTGTCAGCTAGGAAGCTATAGCTGGATGcctaataatgaaattatatttcaaGAAAATAGTTACATCTTTAATCAAGAACAACAAAGGCTTGAGTTTCTTTCATAATAGTGCAGTCTGTGTTTAGAATCAAATGAGGTAAAACTCACTCACTCTGAAAAACAACAGGAGGGTTCTTCAGTGAAAACTGGTCAATACATCATAATCAAATATACTGACATGATCTTAGGCCAAAGCAAGAGACTTGTAGCTACGTTCTGCACATCTGACTGCAGCTCATAACAGACACATAAAACAAAGCAAGCCCCAGCTTGCTTTATACAGCCGACTCCATAACTGTTGGCACCCCTCAGGAAAATCGATAAAAAGACTGGATGAAATAACACATTTTCCTGACAAGCAACTGGAGAAACTCATTACCTTTCAACTTAAaaatatagctttttttttggggggtggcACAGTAGGTAGAcagctgcc

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0030054 cell junction cellular_component
GO:0015464 acetylcholine receptor activity molecular_function

KEGG:

id description
K04806 CHRNA4; nicotinic acetylcholine receptor alpha-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219404 lncRNA upstream 834 20964535 ~ 20967901 (+) True G185381
TU219346 lncRNA upstream 72274 20890247 ~ 20896461 (+) True G185330
TU219189 lncRNA upstream 260708 20705994 ~ 20708027 (+) True G185206
TU219165 lncRNA upstream 400443 20568076 ~ 20568292 (+) True G185182
TU219046 lncRNA upstream 413611 20554856 ~ 20555124 (+) True G185092
TU219446 lncRNA downstream 13407 21002828 ~ 21024560 (+) True G185418
TU219472 lncRNA downstream 69643 21059064 ~ 21060228 (+) True G185436
TU219486 lncRNA downstream 87754 21077175 ~ 21084699 (+) False G185439
TU219480 lncRNA downstream 89251 21078672 ~ 21084699 (+) False G185439
TU219481 lncRNA downstream 89251 21078672 ~ 21084699 (+) False G185439
XM_026912456.2 mRNA upstream 20944 20932742 ~ 20947791 (+) False elovl1b
XM_026912465.2 mRNA upstream 20944 20933212 ~ 20947791 (+) True elovl1b
XM_026912474.2 mRNA upstream 20944 20934989 ~ 20947791 (+) False elovl1b
XM_026920038.2 mRNA upstream 81391 20881535 ~ 20887344 (+) True LOC113530200
XM_026920046.2 mRNA upstream 81391 20882591 ~ 20887344 (+) False LOC113530200
XM_026927592.2 mRNA downstream 39973 21029394 ~ 21036574 (+) False hcn5
XM_026927583.2 mRNA downstream 40837 21030258 ~ 21036574 (+) True hcn5
XM_026915666.2 mRNA downstream 53879 21043300 ~ 21050473 (+) False txlng
XM_026915674.2 mRNA downstream 54040 21043461 ~ 21050473 (+) False txlng
XM_034308444.1 mRNA downstream 54584 21044005 ~ 21050473 (+) True txlng
TU218923 other upstream 817841 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 1097272 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 1134321 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1268461 19695244 ~ 19700274 (+) True rps15
TU218486 other upstream 1415213 19550382 ~ 19553522 (+) False si:ch73-40i7.5
XR_004579103.1 other downstream 200365 21189786 ~ 21210539 (+) False wipf2a
trnap-agg_1 other downstream 969467 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 2943445 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 2944711 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 2945214 23934635 ~ 23934706 (+) True trnaq-uug_3

Expression Profile