RNA id: XM_034308770.1


Basic Information

Item Value
RNA id XM_034308770.1
length 2839
RNA type mRNA
GC content 0.52
exon number 11
gene id gatad2ab
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 15776686 ~ 15800617 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCAGCAAGTTGGCCGTATTTACGGTGTCGTGTTGATTTCGGTTGGGAATGAAGTTAACCGGCACCGGTGAGCAAAGATGTCTGAGGAGGCGGTGCGCCAGACACGCAGCCAGAAGAGGGCACTGGAGCGGGAGGCGCCGGCCCTCGATGGAGACACGAAACGGGTGAAGCTGGAAAGGGGGGAACTCGGTTCTAGCAAAGTGGCAAACATCCTGAAGGCCGGCGAGGTGAAAGCCACCATCAAAGTGGAGGTGCAGGCAGACGATGAGCCTGTGGACATGAGGACGCCCCGCAGcgaaataaaaaaagaaaggccaCCGACACCAGATGACATAATTGTTTTATCAGACAATGAGCCTGGCAGTCCACAAATAAATGGAATCAGCCACAGCTTGAAGAAAACAGACACCGAGATGCTCATGAAGAGTAGCCCTGAAGAGCGCCGGAGGTTTATCAAGCAGCTAAAGGAGGAGCTGCGTCTGCAAGAGGCCAAGCTGGTGCTGCTCAAGAAACTCCGTCAGAGCCAAATCCAGAAGGAGAGCGTGGTGCAGAAGACGACCAATTCCACATCCAATCCCCCACCTCTTGTAAGAGGCAGCATTTCATCTAGCAAAGCCCCGCTGCAGGTGTCGTCTAATAGAAGCTCAGGCACGGTCATTCCTCCTCCTCTGGTGCGGGGTGGTACCCAGGTTTCCAAGCATACATCAATAGTGATGCCACCCTTAGTCAGAGGCTCACAGCCCATTGCTGTGACTCCTCAGCAGATAGCCACGTTGCGTCAGCAGCAGCACTCTGGCTCTGGTCCTCCTCCTCTGCTGCTGGGTCCTCGCACATCTGTGCCCAATGTCCAGGTGCAGGGTCAGAGGATCATCCAGCAGGGCCTGATACGTGTGGCCAACGTAGCCAACACCAATGTCCTGGTCAGCATCCCAcagGGCTCGCCCACTGGGTTGAAGGGTTCTTCAGTCTCCTCGCAGTCAAGCATTGGTACCAACACCTCCACGGTCAATGCCAATGACTCTCCTGCCAGCCGACAGGCTGCTGCCAAACTGGCCCTGCGGAAGCAGCTGGAAAAAACCCTGCTGGAGATCCCTCCTCCAAAACCCCCCGCACCAGAACTCAACTTCCTCCCCTCGGCTGCCAACAATGAGTTTATCTACCTGGTGGGACTGGAAATGGTGGTGCAGAACCTGCTGGATCTGGCCAAAAGCAAACAGCAGCCTCAACAGGGCAGCCCTCCAGTAGCTCCACCTGTGAAGGAGCCTTTTACGTGTACGCAGTGCCACACAGACTTCACCTCCCGCTGGAGACAGGACAAGAGTAACAGTTCGATCCTGTGTGAGCAGTGTATGAGTTCCAACCAAAAGAAGGCCCTGAAGGCCGAGCACACGAACCGGCTGAAGGCAGCCTTTGTGAAGGCCttgcagcaggagcaggagatCGAGCAGCGCATCCTTCAGCAGTCTTCCTCGTCCTCTCCAAAGAGCTCGGCTGCCTCCTCATCTTCGTCATCCTCGCCAGTGGTGAAGTCGGAGCAGCATGTGCTGGTGTCTCCGCAGTATAAAACGGGACGATCCTCACTGCCTCAGCAGCAGTCAAACAGGGCAACAGCAGTGAGTCGCTACCACTCCAGCACCATCAAGCAGAGTCCAGGACAGGTGGTGCGTAATGTGCCCCAGGCGGTGGTCAGCGTGAGTTCACGTGGCATGAACCGCAGCTTCTCCACGTCCAGCCAGCTGCAGAATGCAGTTGCGGCCGCCGCGCTGGTCAGCAGGCCAGGTAAGCATGCTGGGAGGGCTGGGCCaaatagcagcagcagcagagccagcagcagcagcagcagcagcaaggCCAACACCAATGTCTGGAGGAAACAGAGCACACCCACAGGTGTCACTATGGCCTATGTCAACCCAAGCCTGTCCGTACTCAAGACAACTTCTCCAGCAGATCGTCAGCGGGAGTATCTCCTTGACATGATCCCGTCCCGCTCCATCTCCCAGACGACAAATAATTGGAAATAATGCCTCCTCCTGTTGCCACTGCTCCTTCACTGATCTCTCATTATAGAAATCCTGGACACCAGTTGGATATTAATATCAGATAACCAGCTACCAAGCAATAAaatcatttctctctgtttactGGAGACCTCTTGTCCAATCAGAAATAATCCTCTTAGACAGTGAGTGGGTGAGTCCTGAGAGACCGGGTGAAGGATCAGAATtaacactgagacagagagataactGGACCTTTGGAACAGGCTTCGTCTGTATCAGGTCTGTTTATATGCCCCATTGGCTGCAGTGATTCTGCCACATCCACACTGGTGATGATGTCCTTCGCTCACTGGTCTCCTTCATctccatgtttgtgtttctgctgCTGATGGGATTCTTTTGATTCAAGGTGAATAGATAACCCCTCCATTTTAGCAAACATGCCTCCTTCCTCTTGACTAAGTGGAGGTACCCAGGCTGCACAGCAAGccaggaagttttttttttttttttttttaaactctgagGACCATCTAAGAATGCTTCAGCTTTGTAAAACATAGAATTTCAGTGTGGCTCACACATGCCGTCTCTTAAACAATACTATGGGAGTGCAAAATATGTAATTCTTATGTTTCTTTGGACTTACTTTCCCCCTCCCCTTTTGAGGTGTCCTTTTTTTGGAGGGCCGACATGTAAAAGGTATTGTTATACTGTTAAGGTGGTTTTACATCTGCCAgtttagtgtgtatttttaaatgctaaaataagcttaaaataataaaaaaaaaaaaatgtaaccaagtttttttttggGGGAGGCATGGTTACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579098.1 lncRNA upstream 21601 15718529 ~ 15755867 (+) False LOC113533795
TU215606 lncRNA downstream 3930 15804547 ~ 15804748 (+) True G182155
TU215603 lncRNA downstream 72393 15873010 ~ 15885825 (+) False G182152
TU215602 lncRNA downstream 78914 15879531 ~ 15885825 (+) True G182152
TU215618 lncRNA downstream 92675 15893292 ~ 15893527 (+) True G182167
TU215560 lncRNA downstream 137483 15938100 ~ 15987981 (+) True G182115
XM_026912605.2 mRNA upstream 85358 15675692 ~ 15692110 (+) True mef2b
XM_026912664.2 mRNA upstream 104023 15668798 ~ 15673445 (+) False borcs8
XM_026912680.2 mRNA upstream 104023 15668798 ~ 15673445 (+) False borcs8
XM_026912688.2 mRNA upstream 107261 15668798 ~ 15670207 (+) False borcs8
XM_026912651.2 mRNA upstream 111742 15662485 ~ 15665726 (+) True nr2c2ap
XM_026946813.2 mRNA downstream 4669 15805286 ~ 15838980 (+) True yjefn3
XM_026926784.2 mRNA downstream 40380 15840997 ~ 15855719 (+) True cilp2
XM_026928114.2 mRNA downstream 211851 16012468 ~ 16030851 (+) True cbarpb
XM_026947079.2 mRNA downstream 256299 16056916 ~ 16063110 (+) True fstl3
XM_026946320.2 mRNA downstream 256307 16056924 ~ 16063110 (+) False fstl3
XR_004579090.1 other upstream 1065741 14708927 ~ 14711727 (+) False pdzk1ip1
XR_004579085.1 other upstream 1130646 14622543 ~ 14646822 (+) True si:dkey-121a11.3
TU214729 other upstream 1182853 14589919 ~ 14594615 (+) False ankrd29
TU214656 other upstream 1214502 14561690 ~ 14562966 (+) False LOC113540185
TU214440 other upstream 1603250 14165026 ~ 14174218 (+) True G181175
TU215983 other downstream 454446 16255063 ~ 16255852 (+) False LOC113532318
XR_003403746.1 other downstream 779619 16580236 ~ 16580303 (+) True LOC113537281
TU216336 other downstream 782686 16583303 ~ 16584943 (+) True G182819
TU216450 other downstream 1112641 16913258 ~ 16922922 (+) True G182877
trnak-cuu_26 other downstream 1229255 17029872 ~ 17029944 (+) True trnak-cuu_26

Expression Profile