RNA id: XM_026921084.2


Basic Information

Item Value
RNA id XM_026921084.2
length 5593
RNA type mRNA
GC content 0.47
exon number 29
gene id kif14
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 23389070 ~ 23410114 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTCCAGTGAGGTTTGAATTGAAGCGGCAAGATGGCGGCGTAGGCAAGAGAAAGCTTTTGAGTGTCAAAGGTAAACAAAGCCTATTTGTCTGTTTTCCGTAAGAGTGCGTCCATATTTAGGTTTATATACCCACtatattttagctttattttattgttttacagcAAAAGTCTTCGTATCCAGgttagtttaataaataaatgaatgaataaataaataaagaagttgTACGTTAGTGACAGTTAGCCACAGTGGGCTGGTTTAAGATTCTTCAGCATGTCAAAGAGGTAAAAGAGGTTATAAAGTCGCGTCGGATACTATTTAGTTTGATTGCTAACTAGCATTGGATGATTGGAAAAAATGGATGATAAGGAAACATCATCTCTGAGTAACTCTAAAGAGATCAACAAGACCTATATAATATCCAGCCTGAGCAGCAGGTGTGATGAGGCTCCCAGTGCAGGTCGTCTGACTCTTCagaggagaaacacacacagcagaaacaCACTGGGGGATGATCAGGAAGCATCTGAAAACACTGAGAACCAAAGTCATGGGAAACGGTTGACTTTGCAGAGGAGAaccagagcaggagcaggagcaggagcagggtgCACTGCTAAAGCCTCTCATCCACACACATCCAGCCTGACTGAGAAGCGAGCATGGACTTGTTCAAAGATCCTGTCCGAGCCGAACAGCAGAACAGCTCCAGCTCCATCTCCTGCTCCTCTTTCTCTGCGATCTGCCAGCCTGAGAGATGTCATCAAGCCAGGAAACACACCTGCAAAGACTACAGAGAAAGCACAGAAAACATTCTCCACCCCGACCGGGAAAACCCAGTTCGACAGAATAAGTCTGAAGAAAGAAGTTTTTGAAAAACTGTCTGCTAAAGATCAGTCGAAACTTTTaaccccaaaacaaacaggGGTTGAAAGGCTAAAGCAGTCGAGCACCGATCCAAAGGGAGGCACGATACCAGGTTCAGCCAATAAGAAGTTTCCGATTATCAGTCAAAACCGGAGCACGATATCTACTGTGAGAAAGAACACAACTCAGCTTTCTTCAGTTTTAAACGCAAAGTCTAAACCTCCTCCATCTGAAACACGGGTTTTTGTCGAATCTGGGGGTCAAACTGCGGCTTTATCGCCTAAAGAGCTGAAGATGGAAAACAGTGCAGTGACAGTGGCGGTGCGAGTACGACCTTTCAGTCAcagGGAAAAGAACGAGAACGCAGGCCGAGTGATTTTCATGGAAAATCACGAGACTGTAGTTCAGCATCCCGACACTAAACAGACGTACACCTTCTCTTTCGACTTCTCCTTCTACTCGGCTGAGGAAATGGACCCGAATTTCGCTAGTCAGCAGACGATTTATGAAAAGTTGGCTAGACCCTTACTTGAAAGAGCGTTCGAAGGATTTAACACCTGCCTTTTTGCGTATGGACAAACAGGCTCGGGAAAATCCTACACTATGATGGGTTTTGGTGAGGAGGCTGGAGTTATACCCAGATTCTGCGAGGAGCTTTTCGCAAGAGTGTCCAGTGCTGACAAAAATGAGGTGACTTGTCACCTGGAGATGAGCTACTTTGAGGTGTATAATGAGAAGATCCACGATTTGCTTGTGGTGAAGGATGAGCAAAACCAGAAGAAGATGCCATTGCGAGTCAGAGAACACCCGACTGATGGGCCGTATGTTGCAGAGCTTTCTACGAATGTGGTCAGCTCCTATGCTGATGTCCAGGCCTGGCTTGAGCTTGGAAATAAACAGCGAGCTACTGCTGCTACAGGCATGAATGACAAAAGCTCCAGGTCTCACTCTGTCTTCACTCTGGTCATGACTCAGACTAAGACAGAATTAGTGGAAGGAGAAGAACATGATCACAGAATAATCAGCAGAATCAACCTGGTGGATCTGGCTGGCAGCGAGCGCTGTGCCACAGCTCAGACCAGTGGAGAGCGGCTGAGGGAGGGAGCAAGTATCAACAAGTCTTTGCTCACTCTGGGGAAAGTGATTTCTTCACTCTCTGAGCAAGCTCAGGGCAGAAAGAAAATCTTCATCCCATACAGGGAGTCGGTCCTGACATGGCTACTGAAGGAAAGCCTGGGTGGAAACTCAAAGACGGCCATGATTGCAACGCTGAGTCCTGCTTCTAGCAACGTGGATGAGAGTCTGAGCACTCTGCGCTACGCTCAGCAGGCTCGCCTGATCATCAACGTGGCCAAGGTCAACGAGGACACCAATGCCAAGCTGATCCGAGAGCTGAAAGCAGAGGTGGAGAAGCTGCGGGCCGCCCAAATGAGCTCGCAGGGCATCGATCCAGAGAAGATGAGACAATTCCAGCAGGAAATCTTCACCCTGAAGACTCAACTCTCTCAGCAGGAGCGTGAAATGGCTGAGGTGCACAGAACATGGAAGGAGAAACTGGAGCATGCCGAGAGGAGAAAACGTGAAGAGACCAAAGAGCTCCAGCGTGTAGGCATCACATTTAAAGTGGATAACCGGCTGCCCAACCTTGTGAACCTGAATGAGGATCCTCAGCTGTCAGAGATGCTCTTATACATGATTAAGGAGGGGCAGACCAAGGTCGGCAAGCTCAAGTCTGAGTCAGCCCACGACATCCAGCTGTCTGGGGCTCTTATTGCTGATGAACATTGtgttATCTCCAATGTTAAGGGCACAGTCAGCATCACCCCCATGGAAAATGCCAAGACCTTTGTGAATGGAAATCTTGTATCTGAAGCCACCATCCTCCACCACGGTGACCGAGTGATTCTTGGAGGAGATCACTATTTCCGCTTCAACCACCCGGCCGAGGTGCAATGTGGAAAGCGAGTGTCCTGTTGGAGCAGTGGAGATGGCCAGAAGGACTTTGAGTTTGCCAAGAATGAGCTACTTTCAGCTCAAAGAGCTCAACTAGAGGCAGAGATTGAAGACGCCCGACTGAAAGCCAAAGAGGAGATGATGCAGGGGATCCAGGTGGCCAGAGACATGGCCCAGAAAGAGCTGTCTGACCAGAAGCTTCAGTACGAGAACCGGATCAAAGTCCTGGAGAAAGAACTTGAGGaggagaatgaaagaaaaagagcacaGGAGCTTGAGAGGCAGAAGGTCGCCAGCAAGATGGAGGAACTGCAGACCGCGAAGTCTGTCCTGGAGCAAGAAATGAGCATGCATAAGAAACGGTTACAAATGGAGGCCCAGGCTGCCAGACAGGCCATGGCTGATAATGATATTCGACATGCTAAAATCCTTGAAGCGCTGGAAGCGGAGAAGAGGAAAATCGCAGAAGATCTAGCTGATATTCAGAAGAAACGTGCCCTGAAGATGACTCCCAAAACTACTCCTCCACAGTGGGATGCCATGAAATTGTCGCTTATGATTGAAGAAGCTAACAAAATAAGCGCCAAATtcaggaaacacacagtgtttggcagACATGAATTATCTGAGAAGGGGAGTGGAGGAGGAAACGCTGAATTGCAGATCCAAGTGCAGAACACTAAACTGGGCATCTCCACCTTTTGGAGCATGGAGAAATTTCAAAGCAACCTAGCTGTCATGAGGGAACTGGAACAGGGAGTTTGCACCTCGAAAGATGACGATGATGTGTTTTATGACCCCAACGATCACTGGGAGCCAGATATATCTTCAGCATCTGCAGAGTCGTCGTCTTTTTCTCGCAGAAGGAGCAGGAGTCTGCTGAAGAACAAGCGCATCTCTGGGCGACTCTATGAGATCCGCGTGCACCCCATTCAGAGCTTAAACTGCACCTCCTCACAGCCCACGGGCCTGATTAGCATGAGCAAACCCCCGTCTTTTCACTCCAGCAGTTCAGACTCGGCCTTGCCCAGCATCTGCAAAGATCTGATAGCTGCCACGGTTTCCCGTTTGCGTGCCAGTTCATCAGCAGAAGGGAGCGAGAGCCTGGCAGACAAACTCACCCTGGACCTTCTGTCCATTTATAACGCTGCAAACTCCATCGCAGGCTTGTACGGGCAGCTGGATGACAACAGCCAGGAGAACTtgtttgtgtgcagcACTGAAGCACAGACTCATCTTGTGAGAGCTACCTCAGCTATCGAGAGAGCCGTGTTCATTACCACACACTGGGTCTCCAGTATCAGCTCCAGCTCTCAGTCAGTCTCCCAAACTGTGGACGAGCTCAAGACTGAAGTAAAGAGTACAGGAGGATATTTTCAGCTCCTTATTCAGggCTGTGAATctgaaatctcctctatggtgACTGAGGCCCAGAGGAAGCTGAGTAGGAGTACGGATGCCGCTCTGAGCACCACTGCTCACCTGGCAGTATTAACTGGCACACAGCTTCGTCTGACTGAACACGGATCAGACACTGTTGGCAAAAGGTCTGCTGGGATGTGTCTGCGGGAGGGAATGTGCCGAGGTGTGAGAGCTCTCCTGGACGAGGCTCTCCTTATTAGCAGAGAGATGCACAGACATGCTAACTTAGCTCAACCTAGAACTCAGATTTTACAAAACCTTAAAGTGAAAATGCTGGAGGTGGCAAATAATTTGCAAAGCTACATTCACTGCAACATGTCGAAGCCTGACCCTACGGAGAATGATCCAGAGGGAGCCGATGCCATGCATCTGGAACGTTTGAGAAACACGGCCTCCAAGCTCTTTCAGCTAAACAACGCTCTCCAGCAGCTTCACTCCTCCTTGTCTCGCACTCTAAGAGGTAGAGGCAGCGACGTTGGTCTCAGGTCATTCAGAGAAACAATCCAGTCTCTGAGCAAGACCATCAGTGGCCTTGTGCATGGACTGCCGAGACAGACGGATGTTTGTCCCGCCGGTACTCTTCAGCTGCCATGTCTAAAGAGCGTCATGGATGCACGAGATGACCTGCACTCTGCATTATGCTCTCTAGCAGAACTGTTTGATGAGAGCAGTGAAGAAAATGTGGAACCCAAGACCTTTGAGAAGCCTGAGGAACCAGCTCAAGGCCCAAGAAACCGAACTGTTCCTAAAATAGTGTACTCGCTGTCCTCGGGTGTCAGCTCGTGCTCCAGAGACATTCGCTGGGTTTGAGCTGTCTGTTCTCAATCCAGTATAGGAGAAGGGTTCCTTACACTAGCTTAAGCACCAGTATGAATACTAAAGACATTTCCAACATGCACATTTTTCAGTGAAGAGGTACTGTAATATTAAATGCGCAAATATAACACgtcaaaatgctttttttacatgtgattattCTTGTGTGGGGAAGAATATAACCTTTCTTATTTAGAGTGTGTgcttgtttatatataatatagataaGGGTGTTTATTTCTTGTATATTACCAAGGATATAGTAATAAGGTGAAGTTggtaatacaaaaaaaattgtattattagaatagaattttatttcctttttttatatatatcatttGTATTTCATTAATCTCACTCATTACTCTTGTATGCACTGTTTTGCGGCTTTGCACAAACGTTTTACAATTCCTGTCATACATTTATCCCTTTACGTTGACATTAAAGAATAGCAGTTTCTTTACAATCATGTAATAATTCAAtgggttatgtgttatttttcataataaacaCTGATGATAGCTGTT

Function

GO:

id name namespace
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220774 lncRNA upstream 36834 23335346 ~ 23352236 (+) True G186538
TU220644 lncRNA upstream 269293 23118760 ~ 23119777 (+) True G186435
TU220515 lncRNA upstream 383041 23003569 ~ 23006029 (+) True G186331
TU220483 lncRNA upstream 430684 22956296 ~ 22958386 (+) True G186304
TU220507 lncRNA upstream 434969 22953893 ~ 22954101 (+) True G186325
TU220984 lncRNA downstream 66001 23476115 ~ 23476497 (+) True G186699
TU221100 lncRNA downstream 258904 23669018 ~ 23676568 (+) True G186798
TU221099 lncRNA downstream 261870 23671984 ~ 23676568 (+) False G186798
TU221123 lncRNA downstream 301919 23712033 ~ 23714371 (+) True G186814
TU221181 lncRNA downstream 381806 23791920 ~ 23792127 (+) True G186864
XM_034308429.1 mRNA upstream 1394 23378681 ~ 23387676 (+) True ddx59
XM_034308916.1 mRNA upstream 218159 23169883 ~ 23170911 (+) True LOC117598438
XM_026943989.2 mRNA upstream 253918 23132967 ~ 23135152 (+) True fam43a
XM_034308953.1 mRNA upstream 1008050 22312442 ~ 22381020 (+) True pcdh17
XM_026921487.2 mRNA upstream 1622486 21756590 ~ 21766584 (+) False lims1
XM_026912961.2 mRNA downstream 2915 23413029 ~ 23473569 (+) True LOC113526144
XM_026912969.2 mRNA downstream 2915 23413029 ~ 23473569 (+) False LOC113526144
XM_034308532.1 mRNA downstream 2915 23413029 ~ 23473569 (+) False LOC113526144
XM_034308530.1 mRNA downstream 2915 23413029 ~ 23467201 (+) False LOC113526144
XM_034308531.1 mRNA downstream 2915 23413029 ~ 23450648 (+) False LOC113526144
trnap-agg_1 other upstream 1430111 21958888 ~ 21958959 (+) True trnap-agg_1
XR_004579103.1 other upstream 2178531 21189786 ~ 21210539 (+) False wipf2a
TU218923 other upstream 3238176 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 3517607 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 3554656 19827986 ~ 19834414 (+) False tax1bp3
trnaq-uug_2 other downstream 522752 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 524018 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 524521 23934635 ~ 23934706 (+) True trnaq-uug_3
trnaq-uug_4 other downstream 526903 23937017 ~ 23937088 (+) True trnaq-uug_4
trnaq-cug_12 other downstream 528195 23938309 ~ 23938380 (+) True trnaq-cug_12

Expression Profile