Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026921487.2 |
| length | 1219 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 10 |
| gene id | lims1 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 21756590 ~ 21770086 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0051896 | regulation of protein kinase B signaling | biological_process |
| GO:0060047 | heart contraction | biological_process |
| GO:0030018 | Z disc | cellular_component |
| GO:0014704 | intercalated disc | cellular_component |
| GO:0008270 | zinc ion binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU219890 | lncRNA | upstream | 196211 | 21560167 ~ 21560379 (+) | True | G185751 |
| TU219622 | lncRNA | upstream | 268063 | 21488324 ~ 21488527 (+) | True | G185546 |
| TU219609 | lncRNA | upstream | 289652 | 21466332 ~ 21466938 (+) | True | G185533 |
| TU219589 | lncRNA | upstream | 310110 | 21444384 ~ 21446480 (+) | True | G185519 |
| TU219570 | lncRNA | upstream | 346798 | 21407479 ~ 21409792 (+) | True | G185503 |
| TU220105 | lncRNA | downstream | 254264 | 22020848 ~ 22021059 (+) | True | G185940 |
| TU220132 | lncRNA | downstream | 612309 | 22378893 ~ 22381003 (+) | False | pcdh17 |
| TU220165 | lncRNA | downstream | 614814 | 22381398 ~ 22381611 (+) | True | G185997 |
| TU220216 | lncRNA | downstream | 662274 | 22428858 ~ 22429104 (+) | True | G186046 |
| TU220233 | lncRNA | downstream | 788865 | 22555449 ~ 22899731 (+) | True | G186060 |
| XM_026923268.2 | mRNA | upstream | 134313 | 21616189 ~ 21622277 (+) | True | nxph2b |
| XM_026925444.2 | mRNA | upstream | 141298 | 21611776 ~ 21615292 (+) | True | si:ch211-227n13.3 |
| XM_026918518.2 | mRNA | upstream | 150677 | 21561057 ~ 21605913 (+) | False | slc4a10a |
| XM_034308953.1 | mRNA | downstream | 545858 | 22312442 ~ 22381020 (+) | True | pcdh17 |
| XM_026943989.2 | mRNA | downstream | 1366383 | 23132967 ~ 23135152 (+) | True | fam43a |
| XM_034308916.1 | mRNA | downstream | 1403299 | 23169883 ~ 23170911 (+) | True | LOC117598438 |
| XM_034308429.1 | mRNA | downstream | 1612097 | 23378681 ~ 23387676 (+) | True | ddx59 |
| XM_026921002.2 | mRNA | downstream | 1622486 | 23389070 ~ 23410114 (+) | True | kif14 |
| XR_004579103.1 | other | upstream | 546051 | 21189786 ~ 21210539 (+) | False | wipf2a |
| TU218923 | other | upstream | 1605696 | 20149971 ~ 20150894 (+) | True | G184979 |
| XR_003403385.2 | other | upstream | 1885127 | 19865798 ~ 19871463 (+) | True | ccl44 |
| XR_004579107.1 | other | upstream | 1922176 | 19827986 ~ 19834414 (+) | False | tax1bp3 |
| TU218602 | other | upstream | 2056316 | 19695244 ~ 19700274 (+) | True | rps15 |
| trnap-agg_1 | other | downstream | 192304 | 21958888 ~ 21958959 (+) | True | trnap-agg_1 |
| trnaq-uug_2 | other | downstream | 2166282 | 23932866 ~ 23932937 (+) | True | trnaq-uug_2 |
| trnaq-cug_11 | other | downstream | 2167548 | 23934132 ~ 23934203 (+) | True | trnaq-cug_11 |
| trnaq-uug_3 | other | downstream | 2168051 | 23934635 ~ 23934706 (+) | True | trnaq-uug_3 |
| trnaq-uug_4 | other | downstream | 2170433 | 23937017 ~ 23937088 (+) | True | trnaq-uug_4 |
