RNA id: XM_026921504.2


Basic Information

Item Value
RNA id XM_026921504.2
length 2565
RNA type mRNA
GC content 0.41
exon number 10
gene id lims1
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21756590 ~ 21770086 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGACGGTCCCTCAGCAGAAGGGTGGGGTCACTGAAAATCCAGCGCCTGGAGCAAAGcggagaggaaaaaaagtgtttagCTGCTAGCAGTGTTGCATTTCTTTGCTGAAATACTTCATATAAACCTAGTTTAAAGTTGTCGACTCTCAATACTCGTCCTGGATTAGCTGTCTAGTAGGGGATGCTGGGTGTGTCAGAAATGACGGGCAGCAATATGGCCAATGCCCTGGCAAATGCCGCATGTGAGCGTTGTAAAAGCGGCTTTGCCCCGGCGGAGAAGATCGTCAACAGTAATGGCGAGTTGTACCATGAGCAGTGCTTCGTCTGTGCCCAGTGCTTTCAGCAGTTTCCAGAGGGACTCTTCTACGAGTTTGAAGGCAGGAAGTACTGCGAGCATGATTTCCAAATGTTGTTTGCCCCTTGCTGTCACCAGTGTGGTGAGTTCATCATTGGCCGTGTGATTAAAGCGATGAACAACAGCTGGCACCCTGACTGCTTCTGCTGCGACATTTGTCAGGCAGTGTTAGCTGATGTTGGATTTGTCAAGAATGCTGGCCGtcATCTGTGTCGTCCATGTCATAATCGGGAGAAGGCTCGTGGTCTTGGGAAGTACATTTGTCAGAAGTGCCATGCCATCATTGATGAGCAGCCTCTCATCTTCAAGAATGACCCCTACCATCCGGATCACTTCAACTGCAGCAACTGCGGTAAGGAGTTGACTGCTGACGCTCGGGAGCTGAAAGGAGAGCTCTACTGTCTCCCATGCCATGATAAAATGGGAGTGCCGATTTGTGGAGCCTGCAGAAGGCCTATCGAAGGCCGTGTGGTAAATGCCATGGGCAAGCAGTGGCATGTTGAgcATTTTGTGTGTGCTAAGTGTGAGAAACCCTTCCTGGGTCATCGCCATTATGAAAGAAAAGGGCTGGCATACTGCGAGACTCACTACAACCAGCTTTTTGGTGATGTCTGCTACCACTGCAACCGAGTGATCGAAGGAGATGTTGTGTCGGCTCTGAACAAAGCCTGGTGTGTCAACTGCTTCTCCTGTTCTACCTGCAACACCAAGCTCACGCTGAAGAACAAGTTTGTGGAGTTTGACATGAAGCCCGTGTGTAAGAAGTGCTATGAGAAGTTTCCCCTGGAGCTGAAGAAGAGGCTGAAGAAGCTGGCTGAAACTGTGGCCCGCAAGTAGACTTCGACACCCACAGGGGGCGCCCGAGACCCAGTGAACTTTCCTGTGCTTGATGGAATGGAGACCATGCATTTCTATAGCCTTAATATCCTCTTGCATTGCTACTCAGTGGTGTTAGTTGTATTagttcagtattcagtattacTCTTGTATTTGAGGAAAGCCCAGTGAATGAGGCAAATATTTTTCACTTATTGCTCCATACTTCTAATCAGAGTGCCTCttcatttattataattcagGAACCAAAAGGCTTTATGTTTGGtagaaatgtatataaaacttttattcaGTATATGCAATAAGAAGCTTCacaataatcagtgtgtgtgatgtaatgtgCAGTTTACACACTAGAATGCCTTGATGGATTGAATTGCCCTTCTAACATGATACACTGCTTTTACTGTATAGCCAAAGTTGTTTGCCTTTATGTAATCCTATTTTATAATGGTATATTCTGTGAGAAACGggtaaagaaagaatgaaaaaaaaacaaaacaaaacaaaaacctgttTACACGTCTCACTTTAACTGAAATATATATTCTAAATATAAGTTCTAAATCAAACTCCTACCATGATATCACCTTTTTATGTATGTGCTAATATTAcaggcttattattattattacatgattGTATTAAAATACAGTAGGTTGGTGTTAAGGTTGTGCTTTTGGAAAAGTCCTGGCAGATTTGAAGCTGTAAAATCTTAAATATGCCAAATGTTTTAACTGATCAAAGGGTCCAGACTAATAAGGACTTTAAAAAGTTCTCTAAAAATTGTACGTACTCCTGATGCTTTTCAGCGTTATCATATGTGAATCATGGCCGAGTGTTAGGAAAGTATTAGCTTCTGCATTTGAGGAATGACGAGTTACAGTGTGTGCAGCTGAATGTATCGAATTGctacacatcatttttttttttataacttccctgaaaaaaacaaacacacacatagttcATGTACCAGGATTTAATTTAAGTGTGTTTAGTGTCCCACGagcaagtgtgtgattttttttattttatttttattttttacagcaaaatgtGATATGTTTTCTACATCTTGGGCCAAAAATCTGACATGTTGAAAGGACCAGCAGTGTTTTTAGttatttccccctttttttcaaACTGTATATTGTAGATGATGTtctgggtattttttttttttgtccacttCATTTGATTTCCATTTAAGATTTCCACCAGTGACTTTACACAGAATAAAAGCAAACATAAGTAATTACAGCTGAGCATTATATGCAACTATTCATCTTATTTATGCTATACCATTTCACTGTATCTCTAATATGCTGATTAATGCTTTAaacatatgcaaataaaatatgcaCTCGTGA

Function

GO:

id name namespace
GO:0051896 regulation of protein kinase B signaling biological_process
GO:0060047 heart contraction biological_process
GO:0030018 Z disc cellular_component
GO:0014704 intercalated disc cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23354 LIMS1_2, PINCH1_2; LIM and senescent cell antigen-like-containing domain protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219890 lncRNA upstream 196211 21560167 ~ 21560379 (+) True G185751
TU219622 lncRNA upstream 268063 21488324 ~ 21488527 (+) True G185546
TU219609 lncRNA upstream 289652 21466332 ~ 21466938 (+) True G185533
TU219589 lncRNA upstream 310110 21444384 ~ 21446480 (+) True G185519
TU219570 lncRNA upstream 346798 21407479 ~ 21409792 (+) True G185503
TU220105 lncRNA downstream 250762 22020848 ~ 22021059 (+) True G185940
TU220132 lncRNA downstream 608807 22378893 ~ 22381003 (+) False pcdh17
TU220165 lncRNA downstream 611312 22381398 ~ 22381611 (+) True G185997
TU220216 lncRNA downstream 658772 22428858 ~ 22429104 (+) True G186046
TU220233 lncRNA downstream 785363 22555449 ~ 22899731 (+) True G186060
XM_026923268.2 mRNA upstream 134313 21616189 ~ 21622277 (+) True nxph2b
XM_026925444.2 mRNA upstream 141298 21611776 ~ 21615292 (+) True si:ch211-227n13.3
XM_026918527.2 mRNA upstream 150676 21561055 ~ 21605914 (+) False slc4a10a
XM_034308953.1 mRNA downstream 542356 22312442 ~ 22381020 (+) True pcdh17
XM_026943989.2 mRNA downstream 1362881 23132967 ~ 23135152 (+) True fam43a
XM_034308916.1 mRNA downstream 1399797 23169883 ~ 23170911 (+) True LOC117598438
XM_034308429.1 mRNA downstream 1608595 23378681 ~ 23387676 (+) True ddx59
XM_026921002.2 mRNA downstream 1618984 23389070 ~ 23410114 (+) True kif14
XR_004579103.1 other upstream 546051 21189786 ~ 21210539 (+) False wipf2a
TU218923 other upstream 1605696 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 1885127 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 1922176 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 2056316 19695244 ~ 19700274 (+) True rps15
trnap-agg_1 other downstream 188802 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 2162780 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 2164046 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 2164549 23934635 ~ 23934706 (+) True trnaq-uug_3
trnaq-uug_4 other downstream 2166931 23937017 ~ 23937088 (+) True trnaq-uug_4

Expression Profile