RNA id: XM_026921674.2


Basic Information

Item Value
RNA id XM_026921674.2
length 1557
RNA type mRNA
GC content 0.50
exon number 7
gene id krt15
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21290434 ~ 21292917 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agtctctctccctctctcaggaAAGAGCCACTCCTTGCTCTACAGCACAACCATGACCAGCTTCAGCAGTTTTACCTCCTCAGGTGGTTCCTTCAGCGGGGGCTCCTTTCGGGGTCCCGGTATAGGTGGATCATCTCGGCTTTCCACGATAAGCAGTGGTGGTAGCCACCGCTTGATGGTTGGACGTGCCCCCAGTATGTATGGTGGTTCTGGAGGATCTGGTGTGCGCATCTCCACTGTCTCCAGCTCCATACGTGGTGGTGGAGGTGCTGCAGGCCTAGGTTTTGGTAGTGGAGCAGGCTTTGGCTTTGGAGCTGGTGGAGGAGCTGGTGGAGGAGCCGGGTTTGGCTTGGGTGGGGGTTTTGGTGGTGAAGATCTGGGCATTGTGACAGCCAATGAGAAGGCCACCATGCAGAACCTGAATGACCGTCTGGCATCCTACCTGGACAAGGTACGCACCCTGGAGAAGGCCAATGCTGACTTGGAACTGAAGATCAGACAGTTTATGGAAAACAAGGCCTCCCCTGCTGCCAGAGACTACTCTGCTTATGAGGCCACCATAAAGGACCTGCAGGATAAGATACAGGATGCTGCCAGAGATAATGGAAGCATCTACCTGAGCATTGATAATGCTAAACTGGCAGCAGATGACTTCAGAACCAAGTATGAGAATGAGTTGGCCATGCGTCAGTCAGTGGAGGCAGACATTGCTGGGCTTAGGAGACTCCTGGATGAGCTGACACTGACAAGGTCAGACCTGGAGATGCAGATTGAAGGCCTTAAGGATGAGTTGATCTTCCTCAAGAAAAACCACGAGGAGGAACTGGAAGCAATGCGTAATACAATGTCAGGTAGTGTGAACGTGGAAGTGGAGGCAGCACCTGGGGAAGACCTGAACCGTGTCCTGGATGAGATTCGTGAGCAGTATGAAGCTGTGGCTGCCAAGAACCGGCGTGAACTAGAGGGCTGGTTCCAGGCCAAGATCGATAATCTGAACAAGGAGGTGACCGCCAGCTCAGCGAATCTTGAAACGTCCAAGTCAGAGGTCACTGAAGTCAGACGCACTTTACAAGGCCTGGAGATTGAGCTACAATCCCAACTCAGCATGAAAGCATCTCTGGAGGGCGCTCTAGCAGATACAGAGGGGCGCTACTCCATGAAACTAACTGGACTGCAAGCTCAGGTAACAGGATTGGAGCAGCAGCTGATGGAGCTCAGAGCTGATATAGAGAGGCAAGCTCAGGACTACAAGCTTCTGCTGGACATCAAGACCCGGCTGGAGATGGAGATTGCTGAGTACAGGAGGCTGCTGGATGGAGAGGCTGACAGTTTCAAAACAAACATCAGTAAAAATTTGATGGTGAAGACCATTGTGGAAGAGATGGTAGATGGGAAAGTGGTGTCCTCCACAACTAGTTAAATCCACTGTGCCTACATTCAACACCATGATACAACCTTAATTTCAaccaaaatacaattttaatttcaacATTCACAGCAAGAGATGCATGATTCAtgtgaaatgagaaaataaaatgactcaTGGACACAACGACA

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07604 KRT1; type I keratin, acidic

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219537 lncRNA upstream 28258 21261575 ~ 21262176 (+) False si:dkey-28e7.3
XR_003402980.2 lncRNA upstream 42304 21237304 ~ 21248130 (+) True LOC113528706
TU219486 lncRNA upstream 205735 21077175 ~ 21084699 (+) False G185439
TU219480 lncRNA upstream 205735 21078672 ~ 21084699 (+) False G185439
TU219481 lncRNA upstream 205735 21078672 ~ 21084699 (+) False G185439
TU219490 lncRNA downstream 34337 21327254 ~ 21339714 (+) False G185439
TU219483 lncRNA downstream 34520 21327437 ~ 21339714 (+) False G185439
TU219484 lncRNA downstream 34520 21327437 ~ 21339714 (+) False G185439
TU219485 lncRNA downstream 34520 21327437 ~ 21339714 (+) False G185439
TU219488 lncRNA downstream 34520 21327437 ~ 21339714 (+) False G185439
XM_026936635.2 mRNA upstream 12482 21270459 ~ 21277952 (+) True krt99
XM_026917326.2 mRNA upstream 25379 21252145 ~ 21265055 (+) True si:dkey-28e7.3
XM_026912525.2 mRNA upstream 84195 21200218 ~ 21206239 (+) True cdc6
XM_034308923.1 mRNA upstream 91959 21189248 ~ 21198475 (+) False wipf2a
XM_026930296.2 mRNA upstream 91960 21189786 ~ 21198474 (+) True wipf2a
XM_026916820.2 mRNA downstream 28174 21321091 ~ 21324269 (+) True krt94
XM_026935643.2 mRNA downstream 47026 21339943 ~ 21344414 (+) True c11h6orf120
XM_026930037.2 mRNA downstream 53300 21346217 ~ 21351331 (+) True mrpl4
XM_034308958.1 mRNA downstream 53300 21346217 ~ 21350373 (+) False mrpl4
XM_026922435.2 mRNA downstream 66557 21359474 ~ 21373371 (+) True col9a1a
XR_004579103.1 other upstream 79895 21189786 ~ 21210539 (+) False wipf2a
TU218923 other upstream 1139540 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 1418971 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 1456020 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1590160 19695244 ~ 19700274 (+) True rps15
trnap-agg_1 other downstream 665971 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 2639949 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 2641215 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 2641718 23934635 ~ 23934706 (+) True trnaq-uug_3
trnaq-uug_4 other downstream 2644100 23937017 ~ 23937088 (+) True trnaq-uug_4

Expression Profile