RNA id: XM_026921935.2


Basic Information

Item Value
RNA id XM_026921935.2
length 3652
RNA type mRNA
GC content 0.47
exon number 8
gene id sp2
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21143071 ~ 21153622 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTGATTGGTCGAAGGGCGCGCGGGCGGTATCTGGACCTGGGCTTTGCTCTTGAAGGTTTAACGGAGAGCGAATGTCGTCATGAGCGatcAAAAGGACAGTATGGCCACCACAGTtgctgtcagtcccagtgaataTCTTCAGCCCTCAACCACCACCTCTCAAGATTCCCAGCCGTCACCTTTGGCCCTCCTGGCTGCCACTTGCAGTAAGATTGGCCCACCTGCTGCCCAAGCTCCAGCCAGCGCTCCACCAGCCCAGCCAACCACGCGCCGCCTTCACCCCATCAAACCTGCTCCCATTGCTCCGGCTCCACCCAAAAACCTTGGTTTTCTGTCAGCCAAAGGAAATATCATTCAGCTCCCTGCAGGCGTAGGTTCTTCAGGAACCAGTCCCATCCTCCTAACTATCCAGCCCCCGACTCGCCCAGCAAGTACAAGTACTGCCAACATTCAGTACCAGGTGGTGCCCCAGATCCAGGGAGCTCAGACCATTCAGATGGTACCCCAGGGTGGACAGATCCAGATCATCCCTGGGACCAACCAGGCTATCATCACCTCACCTGTTACAGTGCAGGCTGCTACTCCCACTCCTGCACAGAAGACAGTACCCATCAAGCCATCAACGCAAAAGCGGAGGCAGAACAACACTAATGTTACACCCACCACTAACATAGTGCGTCTGCCTAGTGGACTTGCTCTACCCCTCAATGTTGCTACAGGTGAAGTGGGTGCAACTCAGATTGTCACAGAGTCAGCAGCTGCCTCACCTCGAGCAGTAAAGGGAAAGAGGGGGCGGAAGAGACTGGCTGCCGCAGTTCCTCCCGCTCCTGTTCCTCCGCCTGCCTCACCGCCACCGATTGCTGAACAGGTGGAAACAGTGCTGATTGAAACAACAGCTGATAACATTATTCAGGCAGGGAACAATCTCCTGATTGTGCAGAGTCCAGGAGGGAGCCAGCCTGTGGTACAGCAGGTGCAGTTGGTTCAGCAGAAATCAGATCAACAGGTGGTGCAGATACCACCTCAGGCTCTAAAAGTGGTACAAGCTGCTTCTGCAACACTCCCCCCTGTGCCCCAGCGAGTGCCAGCCACCCCCAGTGTGCAGGTGGCTCCCTCAGAACCCACACAGgtactgATTAAAACAGCTTCAGGTGAATGGCAGGCGGTACAACTGCAGGAGACCATCGTAACCACTCCAACTACGCCCACCACCACTCCTATCACGCCGGCTGTGGTGACTAAGAAAGCCCAGCCGGGGGCACGGAAAGAGAGGACCCTTGCCAAGATTGCCCCTGCTGGTGGTGGTCTAATAACACTTAATGCTGCACAGCTCACTTCAGCAGCTCAAGCAGTGCAGACCATTAATATCAACGGTGTTCAAGTACAAGGAGTTCCTGTCACCATCACCAATTCAGGGGGACAGCAGCACCTGACGGTACAGACGGTTCAGGGAGGTGGGCTTCAGCTGGGCAGCATGCAGGCACAGGAGCAGCCGCTGAAGGTGGAGCAGACGCTTACGCTAGAGCTCCAGAGCCAACCAGGAGAGAAGAAACGGCGCATGGCATGTACCTGTCCCAACTGCAAAGATTCAGAGAAAAGGCCGGGTGAGGTTGGGAAGAGGAAGCACATCTGCCACATTGTAGGTTGTGGGAAGACCTTCAGGAAGACGTCCCTGCTGCGAGCGCACGTGCGGCTGCATACGGGAGAGCGGCCTTTCACCTGCAGCTGGGTCTTCTGTGGGAAGAGCTTCACACGCAGTGACGAACTGCAGAGACATGCCAGGACACATACAGGAGACAAGCGCTTTGAATGCACAAAGTGTCAGAAGCGATTCATGCGGAGCGACCACCTCACAAAGCATTACAAAACGCACCTGAACACAAAGAACCTGTGAACGTAGACTGGCCGAAGGTTTTATAAACTCTTACAGAAAACCTTTCCCTGGGAAGGAGCAGGGATTGAGTCAGGGTGTTAATGGAGGAAAATCCCTCCCCTCATCCAGATCACACACATGGTGTGTTCTAGTCCAGGCCCTGTGGCGTAGTCGATCCAGACGAGCCCACACTCCTCATGTGTCTCATTTTCAACTCATCCCGTTTGTCATAGGAGGGCTGGCCATGTGTCTAACCTGGATCCAGAAAGCGACACTGGATGTGTAGTTTGGGAATTCCTGAGTGTTCGGGGTCGGTTTCGTTCTTCCGCAGCAGgaaacagaaagtgtgtgtcaCGTGTATCTCAGACATGAATTGCAGCACCAACATGTACTCCAGCCGAGAAGCTCTGTTTTTCTCCATATTATAAATTTTAGAGcagttttatgtgttttattttgttgagCCTTTTGACTGGTGTGTAGCAGCTCATGGACAGCTTgtattatgtaaatgtttgcttATATTCAGACATATATTTGTACATATGAAAATGCTTGGACTTTGCTCTATACCCCAGCCAAtgtggtttttgttgttgtttgtttgtttgtttgtttgtttgtttgttttttcccccccagaaTTGGAAAGTTTGAAATGCTCTAACCCTCCTTACTTAACACTTGTAACATTTAACAGCTGTTGTTAGAATGAATATATTTTGCTGTGACTGGACAATCATGTCTTGAGTGTGGAAGATGGACACCAGTTAAGAAGTCGTGAATTGAAAACTGCAGAAACATATACAGAAGATAGCTgtatttaaaagaagaaaaaaaatagcttagTCATGTAATTATTTAGATGGTATGTTCTGGAAATTTTTAGAGTTGATTATAGAATCTGATATTCAGATGGCAAAGTGGGGAATTAGGTAAAAATTTGTTACCTTTGTAGAAATATGGATTTATCTTTGCAAATGCAAAACACTATTAGAGGGAAATTAACTTGATGACTTACTCAAATACAATTATAATACAGTACAACTTCATTAGATAGAATTACTTTTGACATACAGCCTTACAGAACTGCCCAAGAGTTTTGGAATTTATTCCAGTCAGGTCTATATCAATGTTTAATGTCCAGATTCTCAAAAGTGCTTTAAGGAGAAAATGTTGCAGAGCtatgtttgtattttgtctCTGAATACATGCAGGTGCATCTTAGAGACTACGAAATGTAGGATATTTGTTACACAAACGGGTGTATCGGCTGCTCTGGCCAAATCTGAAGAATAAGGACTGTGTATATTGTAAATGAGCAAAAAGGAGACACTGTATAGTTTCATTCCTGTACTACACAAGCCTGTTAGATGACcctttttatcagtttaaatGTTGCCTTAGAAAGCTTCACTCCCTATTTAAAGAGATTTCTGTCTAATTAAATGGAACTGCATTTGTAGATTTGCTTTATCTTTTGTCTAACTTGTATTATGAAATGCCAACTTTATGTGCACTGACCAAATTCAGGGTTTTACTTTACTGGTTAAATTTAGTATTCTTTTCATTCAGCGTTATTGGTTGACAGAATTGGTGAAAAAAAGACCTATTTTTTATCTTTCCTAGATAAATCCTACACCTAAAATCTCTGTCTCTGAAAGCTAATGATGGGCAACTATTTCTATATCTGTGGAGGTGTTTAAACAGGAGAGCTTGCTACTTTTTCTACAGTCAGTCCATCTTTCCCAAACTGACAATAAAGCATTCAAATGAC

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219486 lncRNA upstream 58372 21077175 ~ 21084699 (+) False G185439
TU219480 lncRNA upstream 58372 21078672 ~ 21084699 (+) False G185439
TU219481 lncRNA upstream 58372 21078672 ~ 21084699 (+) False G185439
TU219491 lncRNA upstream 58372 21078672 ~ 21084699 (+) False G185439
TU219472 lncRNA upstream 82843 21059064 ~ 21060228 (+) True G185436
XR_003402980.2 lncRNA downstream 83682 21237304 ~ 21248130 (+) True LOC113528706
TU219537 lncRNA downstream 107953 21261575 ~ 21262176 (+) False si:dkey-28e7.3
TU219490 lncRNA downstream 173632 21327254 ~ 21339714 (+) False G185439
TU219483 lncRNA downstream 173815 21327437 ~ 21339714 (+) False G185439
TU219484 lncRNA downstream 173815 21327437 ~ 21339714 (+) False G185439
XM_026926035.2 mRNA upstream 1224 21131479 ~ 21141847 (+) True socs7
XM_026926043.2 mRNA upstream 1224 21131480 ~ 21141847 (+) False socs7
XM_026940939.2 mRNA upstream 28578 21108593 ~ 21114493 (+) True mrpl45
XM_034308716.1 mRNA upstream 37195 21086917 ~ 21105876 (+) True npepps
XM_034308442.1 mRNA upstream 72974 21063516 ~ 21070097 (+) False zrsr2
XM_034308757.1 mRNA downstream 2796 21156418 ~ 21173344 (+) True abcc10
XM_026928883.2 mRNA downstream 20407 21174029 ~ 21187064 (+) True si:ch211-69b7.6
XM_026928890.2 mRNA downstream 20407 21174029 ~ 21187064 (+) False si:ch211-69b7.6
XM_034308923.1 mRNA downstream 35626 21189248 ~ 21198475 (+) False wipf2a
XM_026930296.2 mRNA downstream 36164 21189786 ~ 21198474 (+) True wipf2a
TU218923 other upstream 992177 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 1271608 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 1308657 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1442797 19695244 ~ 19700274 (+) True rps15
TU218486 other upstream 1589549 19550382 ~ 19553522 (+) False si:ch73-40i7.5
XR_004579103.1 other downstream 36164 21189786 ~ 21210539 (+) False wipf2a
trnap-agg_1 other downstream 805266 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 2779244 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 2780510 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 2781013 23934635 ~ 23934706 (+) True trnaq-uug_3

Expression Profile