RNA id: XM_026922544.2


Basic Information

Item Value
RNA id XM_026922544.2
length 8037
RNA type mRNA
GC content 0.47
exon number 51
gene id zgc:172302
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19555712 ~ 19584739 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGCCCCTCCCACTTTCCTGTCTCTTCCTTCTGAGGTGTCCTCACGGACCGGCACCGGCTTCATGTCCCGACGGAGAGCAGGAATGTTTCAATATAATGCACTGTCcaagcaaaaataagaagccGTTTTGACAGCAGAGATACAACCATGGCCATAGGAACCCAGCTCTTACTCCTGCTGTGGAAGAACTTCACCTACCGCAGGAGGAACAAGATCCAGCTGATCATAGAGCTGCTTTGGCCTCTCTTCCTGTTCTTCATCCTCATCGCTGTACGTCACTCGCACCCTCCCTACAAGCACAGTCAGTGTCACTTCCCCAACAAAGCTCTCCCGTCTGCCGGCACTCTAGCATGGGTTCAGGGCATCATCTGCAACATCAACAACCCATGCTTCCACTACCCAACTCCAGGGGAGACGCCGGGTGAAGTGGGAAATTTTAATAACTCAATACTTTCTCGACTATTCGTGGATGGCAGGACCATTCTCTCCAACCTTGGCAATCAGACAACCCTCTCAGCCTTAGAGAACCTCTCGCTTGCTGTTCAGAGACTGGGCGAGAGGCAGGAAGCTTGGCCAAaTCTGACAGTGGAAGAGTACCTAAGGGTCAATGAGACATTCTCCTCCTTCTTGAGGACAAACTGCAGCCTTCCTCCTTCAGCTGTAGACCAGTTACTGAGAGCACGACTCAGCCTCCAGGTGGTGTCACTGGCAGGTGCTGGGATGCGTCTGTCCGATATCGTCTGTAATGCCACACTCCTGGACCGCTACCTCACAGTGGAAGGAGACTCCTCACTCACTGAGCTGCAGCAGTACTTATGTGCTGTTCCCTCAGATTTGCTGCAGCAGGCCGAGCAAATCTTCCTTTCACAACTGAACCTCAGCAAGATTTTCACAAGGGAGCGACTCCTCTCCAATGCTGCTGAAGTGCGTCTGCTCAGCCAGGCTGTCTCCTCTGTGGCTCGGGACTTCACCTCACATTTGAATGACATGTCTGCTTTATCCAGCTTCACGGAGCTGAATGCAGAACTGAGACTGCTTTTTCCAGAGAGTGGCTCAGTGCTACCGCGTGAGAGTTTTCGAGCTTTCTCCAGGATTATGTGCGGGCATCCTGAGGTGGGCGGTGAGAAGATTCCTTCCTTTAACTGGTATGAAGACCATGACATCAAGTCCTTCATGGGTAAAGATGGGACAGAGGAAAATGGCTTGGAAAATGACAACACTACCActcCATTTTGTAAAAACCTGATTCAAACCCTTGAGTCGAATCCCCTCTCTCGCATGGTATGGAGAGGCATTAAGCCACTTTTCATTGGGAAACTTCTGTACACACCGGATACTCCTGCTACACAGAGCATCATGAAAGAGGTGAACAGGACATTCCAGGACTTTGAGATTGCGGAGGTAAACGCCGCATGGGAGGAAGTGGGACCCAGGCTGAAGAGCTTCATGGAAAGCAGTGTGGAGATCCGTATGCTACAGGATTTGCTGAGGCGACCCGAGGTGGCCGTTGTGGTGAATCTTCAACTGGAGAACACTTCTTGGACAGCTTCTCGCATCGCACGCTTCCTCTCCACGCCGAATCGAGACACTCCTAAGAAAGAAGGGGCGCCTGCTACATGGCTGGACCTGTATCAGGATTTCAATAGCACCATAAGCTTCTTGTCCCAGCTCACAAAGTGTTTTTCGCTGAATAAGCTGGAGGGAATGGCCACAGAAGGGCAGCTGGTGGAGAGAGCATTGGAGCTGCTGGAGGATCGTCAGTTCTGGGCTGGAATAGTCTTCCTCCTCCCAGACCCTTCCTCCTCAGATCTTCCTCCCCACGTCAAGTACAAGATCCGCATGGACATAGATGATGTCACACGTACCAATAAAATCAAAGACAAGTTCTGGGATCCTGGTCCAGCTGCAGAGCCCTTCAGTGATCTGCGCTACATATGGGGTGGCTTTGTCTATGTGCAGGATTTAGTGGAACGAGCAATAACTCGTGTGCTGAGTGGCAAACAACCAACTACAGGAATATATATCCAGCAGATGCCCTACCCATGCTTTGTGGATGATGTCTTTCTGCGAGTCTTGAATCGTTCGCTCCCTCTCTTCATGACGCTGGCGTGGATATACTCAGTGGCAATGATCATTAAAGGCATGGTGTATGAGAAGGAGGCACGACTGAAGGAGACTATGAAGATCATGGGCTTGGGCTCAGGAACGCTCTGGCTCAGCTGGTTCATCAGCAGTTACCTGCCTTTTCTCTTCAGCTCCGGACTTCTCATTACTGCACTCAAGTTGGGAGATATCTTGCCCTACAGCGACCCTGCGGTTATCTTCTTCTTCCTGGCCGCCTTTGCTACAGCCACAATCATGTTGTGCTTCCTCATCAGTACATTCTTCTCTCGTGCCAATCTGGCAGCAGCCTGTGGAGGACTCATCTACTTCTCTCTCTACCTGCCTTATGTGCTCTGTGTGGCCTGGAGGGAATATCTGACCAGCACACACAGAATCCTAGCAAGCTTCCTCTCTCCAGTAGCCTTTGGATTTGGCTGTGAGTACTTCTCTCAGTATGAAGAGCAAGGAGTGGGTATTCAGTGGTTCAATCTTCTGTCCAGTCCTACTGAAGGAGACAACTACAACTTTACTACCTCAATCATAATGCTGTATGTGGATGCCTTCATCTATGGAGTGGCCACCTGGTACATTGAAGCTGTGTTTCCAGgGCAGTATGGAATTCCCAGGCCTTGGTATTTTATCTTCCAGTTAAATTACTGGGGAGGAGTACCGCTGGAGGCTGACATACCCATTCCTCCAGTACCATGTGATCAACCAGACGataaaattgaaCCAGAACCTTCTCATCTTGTCCTTGGGGTAGCCATATATGACTTGGtgaaaatttataaaaaagGGGCCAAGCTTGCTGTCAATCATCTGAACCTCAAGTTCTATGAGGGTCAGATCACGTCATTCCTGGGTCACAACGGAGCTGGCAAGACAACAACGATGTCCATTCTGACTGGGCTGTTCCCCCCGACTGCTGGCACAGTTTACATAAAGGGCAGGGACATTCGCACAGACATGGACATCATCCGTAGAACTCTGGGAGTGTGTCCCCAACACAATGTTCTTTTCCCAATGCTCACTGTAGAAGAGCATGTATGGTTCTATGGCCGTCTTAAAGGCATGAGCAGTGCCGAGGTTAAAGAAGAGATGGCCTCCCTGCTGGAGGATGTGGGACTGTTACACAAACGACACGAGCAGACCAGGAACCTCTCAGGCGGCATGCAGAGGAAGCTCTCAGTAGCTATAGCCTTCATAGGAGGTTCTAAAGTTGTTGTCCTGGACGAGCCCACTGCTGGAGTGGACCCCTATTCGCGACGTGGGATATGGGACCTACTGCTCAAATACCGCAAAGACCGTACCATTATTTTGTCTACACATTACATGGATGAGGCTGATCTCCTGGGCGACCGCATCGCCATCATCTCTCAGGGGAAGCTGTGCTGCTGCGGCTCGCCACTTTTCCTAAAAGCTCGTCTGGGCACAGGATATTACCTGACCATAGTGAAGAAGGAGCTCCCAAGTCTCACACCAAGCAGTACAAGTGCCGCCAATCTCTCAGCATCCACACTCATGAAGGAGAGTGATTCTTCCATGAGTGATGACACTGGACTTGGAAATGAGCTCTATGGCTCAGATGTGAGTGGCCTTGTGGCTCTTGCCCAACACCACATTGCTAGGGCTCAGCTGGTGGAAGATGTGGGCAGAGAAGCAGTGATCAACTTCCCCCATGCCGCCTCGGAAGATGGCACTCTCGCCCTTTTCTTGGCAGAGCTGGAGAAACGTCAGAGCGAGTTTGGCGTTGTCAGTTATGGACTCTCAGATACCACACTAGAGGAGATCTTTCTGAAGGTGGCTGAAGAGACAGGAGTAGATGCTGACCCAGAAGGAAGTGAGGGAGAACTGTCTGAGGACAGAGACACAGAAAGGATACAACATTGTAAAACAGATGCTAATGAAACGGACCCCCTAAGCAGTAATGTTCAGGGTGGCATGACCCTCACAGGCTGGGGGCTGACCTGGCAGCAGCTCCGCGCACTCTTTATCAAGAGGCTAAAGTACGCCCTCCGCAGCCGCCGAGGTTTCATAGCACAGattGTGCTACCTGCAGTATTTGTCATGGTGGCTCTGCTGTTCAGCCTCATTGTCCCTCCCTTTGGAAAGTATCCCCCTCTTGAGCTGCAGCCATGGATGTATGGCGAACAGTACACTTTCTTTAGCAATGATGCCCCAGAGAACCCTGAAATCCAGAATCTCCTTGATGCTCTTCTGGATCCTCCTGGATTCGGGACCAAATGCATGGAGTCAGACATGGAGCCCCAGTGTGAGGACAGTGAGGCGGGGACAGTGTTTCTGCGACCCCAGATTTCCTATACCACATGGCAGCTTTTTAACAAAGTCAACTGGACAGTTGAGCTCCCTTCTCCTGGCTGTGAATGCAGCACTGAGGATGTTCGCAGAATGCTACCTGAATGTCCACTGGGAGCAGGAGGCTTGCCTCCTCCCCAGATAAAAAGATTGACAGGTGACCTGCTGCAGAATCTGACTGGCCGTAATATTTCTGACTACCTCATCAAGACTTACCCGCAGATTCTGAAAAAAAGCTTGAAGACGAAAAAGTGGGTGAATGAGTTCAGGTATGGAGGTTTCTCTCTGGGCAGTAAAAGCTCACAGGGTCAGACAGATATCCATCAGCTAGAGCAGTCTGTAATGGCTATAAGAACACGCTACAAAATAGCACAGAACGGCTCACTGGATCAACTTTTGGACAGATTACCAGGCCTTCTTACTGGGCTTAGTAGTCAAAATAATGTTAAGGTATGGTTTAATAATAAAGGTTGGCATGCCATGGTGTCATTTGTGAACATCATGAACAATGGACTGCTCCGTGCCAGTCTTCCTCCAGGACCAGACAGAAGGAAACATGGAATAACAGCCTATAATCATCCACTTAACCTCACCAAGGAGCAGCTCACCGAGTTTGCCTTaaTGACCACCTCAGTGGATGTCTTGGTGTCCATATGTGTGATTTTTGCCATGTCCTTTGTACCAGCAAGTTTTGTACTGTTTCTGATCGAGGAGAGGGTCAGCAAGTCTAAGCACCTTCAGTTTGTTAGTGGGGTCAAACCCATTCTGTATTGGACTGCAAACTTTGTTTGGGACATGTTGAACTACACGGTTCCTGCTACCATGGTGGTCCTCATCTTCATAAGCTTCCAACAGCAGTCTTATGTCTCTGAAAAAAACCTTCCTGCGCTAGTGCTTCTTCTCTTGTTCTATGGTTGGTCCATCACTCCTCTAATGTACCCTGCCTCGTTCGTGTTCTCTGTGCCCAGCACAGCCTATGTGGTGCTCACCTCCATCAACCTTTTCATCGGCATCAATGGCAGCATAGCCACCTTCGTCCTCGAGCTCTTTGTTGATGAACATTTAAATGAGGTCAACAGGATCCTCAAGAAGGTCTTTTTGATCTTTCCTCACTTCTGTCTGGGTCGAGGTCTTATTGACATGGCTAAAAACCAGGCAATGGCAGATGCTTTCCAGAGGCTTGgAAACACGCAGACACTGGAGCCACTGGCATGGGATTTTGTAGGGAAGAACTTGTTTGCTATGGCAGTCGAGGGCGttgtcttcttcattttcactgtaCTGCTTCAGTACAAGTTCTTCATACACTTCAGAATGTGGTCTGATCCTGTCCTGCCACCACTGGGCCCAGAGGATGAGGACGTAGCAAATGAAAGAGAACGTGTGAAAAGCAACAAAACTCAGGACAATATTCTTATTGTCAGAGACCTGAGCAAGGTCTATAAGGCAGGCAAGAGGCCAGCAGTGAACCAGCTTTGTCTTGGCATTCCTCGGGGAGAGtgctTTGGGCTTCTTGGGGTTAATGGGGCTGGGAAGACTTCCACTTTTCGCATGCTGACAGGAGACACCACCATTACCtatggagatgcttttctcaaCAATTACAGTGTGCTGAATGACATGGACAGAGTACATCAGCTAATGGGCTACTGTCCTCAGTTTGATGCCATCAATGACCTTTTGACTGGAAGAGAGCACCTAGAGTTCTATGCTCGATTGAGAGGAGTCCCTGAGCCATATGTAGCAAAGGTCTCACAGTGGGGAGTAAAAAAACTGGGACTGACACAGTATGCTGAGCAAGAAGCAGGAGGATACAGTGGAGGCAATAAACGCAAACTCTCAACTGCCATTTCTCTCATCGGAGCACCACCAGTTGTTTTTCTGGATGAGCCCACAACAGGAATGGATCCAAAGGCTAAGCGCTTCTTGTGGAACTGTATCCTCAGCGTCATCAAAGAAGGCCGAGCTGTTGTTCTCACATCCCACAGTATGGAAGAGTGTGAAGCTCTCTGCACTCGCATGGCCATCATGGTCAATGGGAGGTTCCAGTGTCTGGGTTCAGTGCAGCACCTCAAGAACagATTTGGCGATGGGTATACAATTATCCTCCGCTTGTCTGCACCATCTCCGGATTCCTGCCCCGTGAATGCCTACATCCAGAACTGCTTTCCTGGAATCAAGCTGAAGGAGAGACACCACAACGTTCTGCAGTATCAGCTGCCAACTCACGCCTGCTCCCTCGCTCATGTGTTCGACATTCTGTCAAACAACAGCGAAGAGCTGGGAATAGCGGAATATTCCGTCTCTCAGACCACACTGGACCAGgtgtttgtcaaCTTCGCGAAGGAGCAGATGGATGACGATGACCAACTCAGAGAGGTGGCTATAAACAGTGGATCAGATGCAACTCAATCCCGCACACCTCAGCAATCCAGTCAAACTATATATCCATCGCTAACAACTTCTTTTGAACCTAAAAGATCAGTGTCTCAAGTTACTGCTGCTCAGTCACCCCATCCGTTATCATCATCCCAATCCAGTCAGCCAGGAGCTGCATGGTCAAAGACTAAAGAGAGCAAATGTAGCAAAACAAAGCAACCTCAGCAAATACAAATGCAGCCTCTAATGGATTTCTCAGCTAATGGATTAAAGTGCACAGAAGAAGAGAAATCTCAGAGCAAAGACCTTACCAAGCTTTTTATAGTCAAGACATGAATGACCTCTCGGTCTCAAATCTTGATGTTCTGcttgattttaatatttagtttaATCTGTATTTGTCTCAAACTACCTTTCATGTATTGAAGATATTGAGTACTCTCAGGACCACTCTGTTAAATTGTCTGAACACTGCTGTATGATGCTAATTGCACTTTACATCCTGTATGTCTTGTGCAAGTCAATTTGTTGACAAATCTTATTTACTTGGAAGTTTATTATATGATTTTAGAATTTCTTTTCATAATTATCTGCAAGTCTGTAAATCACGTGTTATAATCAGAATCTGCCTTCATCAAGTCAGCCTTTTTCTATTcagatgtttctgtttttaaaaggttttagaCAAATTGTGCACCTCTGATGCACATTGGCATAAAAGGAGCTGTAAAACTAAACTCTAAGATGCACTTAGGAAAATGATGAATACTGTGTCATTGGAATGTAttcataaatcaaaaatatcattttaaatgatggAAATTGTATATTGCATATGTAAAGTGATATTTACTGAAATGTGCAGTTTCTCTGAGTACATGtagaagaaaaatgcaaatgcattcAAGTTCACAACTACGTGAAAGTATAAGGTGTTTGTGCAAATTAATTTTGCACAGACCTCCACTGTCTCCTCCATTGGCTgcatgaaaatatatgaataattcTCCATTGAGTTTCTCCAttgtaacaataaaaatacaataagacAACATCTTACACATCTgcacttttttgctttttgcatgCAAGTATTCAAATACAGCTGCACATTCAGTATTTGTGTCATTTTACAagtgtaaattaatttaaactcCGTGTTATtgcacttattatttatttctatatatttttaagaacattaataaatgtataagtCAAGTACAAGCacaacattt

Function

GO: NA

KEGG:

id description
K05643 ABCA3; ATP-binding cassette, subfamily A (ABC1), member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218481 lncRNA upstream 894 19553977 ~ 19554818 (+) False si:ch73-40i7.5
TU218492 lncRNA upstream 5386 19548663 ~ 19550326 (+) False G184614
TU218480 lncRNA upstream 10210 19526877 ~ 19545502 (+) False LOC113546543
TU218362 lncRNA upstream 67934 19486372 ~ 19487778 (+) False smim7
TU218363 lncRNA upstream 67934 19486372 ~ 19487778 (+) True smim7
TU218499 lncRNA downstream 76353 19661092 ~ 19664491 (+) True G184617
TU218615 lncRNA downstream 118896 19703635 ~ 19704250 (+) True G184718
TU218741 lncRNA downstream 223974 19808713 ~ 19809254 (+) True G184823
TU218759 lncRNA downstream 259308 19844047 ~ 19844800 (+) False LOC113534304
TU218810 lncRNA downstream 336732 19921471 ~ 19947483 (+) True G184882
XM_034308397.1 mRNA upstream 743 19550646 ~ 19554969 (+) True si:ch73-40i7.5
XM_034308909.1 mRNA upstream 7500 19543469 ~ 19548212 (+) True LOC113546543
XM_034308528.1 mRNA upstream 24025 19527046 ~ 19531687 (+) True LOC117595669
XM_034308463.1 mRNA upstream 30715 19509033 ~ 19524997 (+) True si:ch73-40i7.2
XM_026929979.2 mRNA upstream 50611 19498363 ~ 19505101 (+) True slc35e1
XM_026922570.2 mRNA downstream 2589 19587328 ~ 19597392 (+) True r3hdm4
XM_026922559.2 mRNA downstream 14524 19599263 ~ 19605614 (+) True LOC113531697
XM_034308939.1 mRNA downstream 22708 19607447 ~ 19638191 (+) True arid3a
XM_026935427.2 mRNA downstream 22708 19607447 ~ 19638191 (+) False arid3a
XM_026935519.2 mRNA downstream 22708 19607447 ~ 19638191 (+) False arid3a
TU218488 other upstream 2190 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other upstream 2190 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218227 other upstream 286490 19254957 ~ 19269222 (+) False adgrl4
TU217312 other upstream 1759093 17795445 ~ 17796619 (+) True G183549
TU217273 other upstream 1773899 17773713 ~ 17781813 (+) False ect2
TU218602 other downstream 110505 19695244 ~ 19700274 (+) True rps15
XR_004579107.1 other downstream 243247 19827986 ~ 19834414 (+) False tax1bp3
XR_003403385.2 other downstream 281059 19865798 ~ 19871463 (+) True ccl44
TU218923 other downstream 565232 20149971 ~ 20150894 (+) True G184979
XR_004579103.1 other downstream 1605047 21189786 ~ 21210539 (+) False wipf2a

Expression Profile