RNA id: XM_026922981.2


Basic Information

Item Value
RNA id XM_026922981.2
length 3313
RNA type mRNA
GC content 0.48
exon number 4
gene id nr2f6b
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19799656 ~ 19808358 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagagagagagagagagagaagggtggggggaagtgagagagagaaggagggagggaaagagaaagagagagaaacagagcaggGTCTGTTGACCACAGAGGCTGGTTGATCTTTCCTCTGTCCTTCATCCGTGGCCAAACGGCGCTGACTTCCTCTATTCGCTTTCACCAAAGGGACAGAAAGACggaaggagaaagaagaaaagcgGAAACGGTTTCACAGTGGCTTCCGGGAACGCAGGGGCGAGCTGAAGCCCTGGAGCTGTTACTGCTGGATGGGCAAGTGCTGACAAAACAAGGCGAGGGAGGGACACTCGAGACACACGGACGCTTGCAGATCTAAGATTCCTCCTTTTTCACAGACCTTGCCCTCTTAATCGATGTTTGAATCCCATGCTCTTCTTTGAAACTGACGCAAGAGTGTACGTTGAAGCGAGAAGATCTGAGCCTGGGTTTCCCAACAGGACAGAaagggtgtgtgcgtgtgtgtgtttgtatgtgagagagatagaggggaCTTCCTTGAACTTTGATCCTTCATAGGGAGGGCTGAAAGAGAGCTCTGTTTATCATTAGCAGGCTTTGTCTCTTTCCCTTCTTGGTAGCTTTGAATGTGAAGATTTATTGGAACCGGATTCTTGTAGTAGTTTTGGACATGTGTACTTTATTTGGTGAGATATTACTGTAGCCATTGATGAGCAAAAACTCATTTTctgctttaaattttttttttgttttaactgtgTTCTTTTAAAATAGTGGGAACAGAGATTGCTAGCgctgcaaaacacacagcaagaaCAGGTTTGACTTGTTAGTGACCTGTGGGCAGGGCAACTGTCTCATGCACGGCTCCTAAAGCGGCACAAGGTTTGTTAATGCTCGCTGGCTGAGATGAGGCATTTCGGTTCTTCTTAAGAGGCGCTTTACTTTTGCCCCAGTTTCGGAGTCGCAGGGCTGTGCATGTTTATGTGTAATTTATAGTTTCCTGTAAAGGGCCAGGCTGTATGTTACTCACTCTTGACTGAACTCTGAACCACTTGGTGAAGCAGACGTTCTTCGAGAGCCCTGGAGGATTACTTTTAAGTTAAACCTGAGTTTTAAGATCACTAGGACTACAGAAAACAGGCCTGCAAAACCGAAGAACATTTGCTGATCAACCGTTGACTGTCTGAAAGGCCGATTTTTGAAAGGGCCGTCAGATTTAGGCCGTGTAAACGTTTGAGGACCTCGTGTCACTGTTTACTTTTCTCCTTCCACACTCGAGAAGCTTGAGGTTAATGTCTGCAGTGTgaactctcacacacaatctCAGGCAAGTCTGAATACTTACTGCTGGGAGTGGATTTCGTTAAAAAAAAGCCCTGGTGGTGCACACAGCGATGGCCATGGTGGGTGGGGGATGGGGCAACCCTAATGGGAGCACCAATGGCCTGGGGGAGAAGGGCTACCTGCGGGGGGAGGAGGACGAGAGCTCTCCCCAGGCAGGGAACAGCGATGCCGAGGGCGGAGAGGATGACAAGGCCTGCGTGGTGGACTGTGTGGTGTGCGGTGACAAGTCCAGCGGGAAGCACTACGGCGTCTTCACCTGCGAGGGCTGCAAGAGCTTCTTCAAGAGGAGCATCCGTCGCAACCTTAGCTACACATGCAGaTCAAATCGAGAATGTCAGATTGATCAACATCATCGCAACCAGTGTCAGTACTGCCGTCTGAAGAAATGCTTTCGTGTGGGCATGAGAAAAGAAGTCCAGCGTGGACGTATTCCTCCATCACACTCAGGTATCAGCCCAACCTCCATGGTTTCTGCTGGTGGAGGTGGGCCTGGAGGACCAGGCATGGCTGGTGACTTTTTCAATGGTCAGCCGGCACCCGAGCTTATCTCACAGCTCCTGAGAGCTGAACCCTACCCCAGCAGCCGCTACGGAGCTCAGTGTGGTCAACAGTTGCCTGGAGGCCATGGCTCCGTCATGGGCATCGACAGTATTTGTGAGCTGGCTGCCCGACTCCTCTTCAGCACCATTGAGTGGGCCCGGAACATTCCCTTCTTCCCTGACTTACCTGTCTCGGAGCAAGTGGCCCTGCTGCGCCTCAGCTGGAGCGAACTGTTCATCCTGAATGCAGCACAATCAGCCCTGCCTCTACACATGGCCCCCCTGCTAGCTGCCGCTGGCTTCCACGCTTCCCCCATGTCTGCTGAGCGTGTGGTCTCCTTCATGGACCAGGTGCGAGTCTTCCAGGACCAGGTGGATAAGCTCACACGACTACAGGTGGACTCTGCTGAATACAGCTGCCTCAAAGCCATAGCCCTATTTTCACCAGATGCATGTGGACTGACAGACCCAGCCCACGTGGAGAGTCTTCAGGAGAAGGCTCAGGTGGCTCTGACTGAGTACGAACGCATGCAGTATCCGACTCAACCACAGCGCTTCGGTCGCCTCCTTCTCCGCCTGCCCTCACTGAGAGCTGTCCCCGCAAACCTCATATCTCAGCTCTTCTTCATGCGACTGGTGGGCAAGACGCCCATCGAGACACTCATTCGAGACATGCAGCTCTCTGGCAGCTCCATTAGCTGGCCTTATGTGCCTGGACAGTAGCTGGGTTGGACACCCTGTGAGCAGACAACAGTCAGCCACTCAAACTTTGACTTTCATGTTCTGTGTGGGCTTATAGGATTGTGATATGTAATTTCCTTTTAGTTGCTGCGAGAATATTCTTGTTGTGTTGCAGCATCTCATTGCTCATTAGTGTACATGGAGAAGGATGGCCAAAGGTCAATATGCTGTCACATGTCCTTGGGCAGATGAATAGCGTCACTTGATTTTGGGATACCTCAGGTTTTTTACGTAAATCGCAGAACTTATAGAGGTGACTCTATTGTAAATGCATAAGCACAGTGACAGATCATTGACAAGAAACTATGACTAGTAAAGGAAAATACAATACATTTATGGCATTGCATTCAGAGATATATCTCAACGCTGTGATATATGACTGATCCAGGTCCAGCTTTAAACAATTACAGGAATGTTCCTGCTATACCTAAGAATAATTACTATTTCAATTATAACAATTGATTATGTAGTTTAGACAAATTAACCTACTCATGAAGGTATTGCCATGGACTGCAGTGCTACTTACTTGAGAAATCAGTGGTGAATATGTATTGTAAAATGTGATGgtcacattgtttaaaaaagctCTATGTACTCTTACTTAATTGGGTCCAAAAATTTTTCATATTGTCGGCCATGAAAAATATCCGATATTTTTGCATACGAATAATTAAAAAGCATTCATCCAAACACTCTGAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218615 lncRNA upstream 95406 19703635 ~ 19704250 (+) True G184718
TU218499 lncRNA upstream 135165 19661092 ~ 19664491 (+) True G184617
TU218491 lncRNA upstream 197017 19548663 ~ 19602639 (+) True G184614
TU218741 lncRNA downstream 355 19808713 ~ 19809254 (+) True G184823
TU218759 lncRNA downstream 35689 19844047 ~ 19844800 (+) False LOC113534304
TU218810 lncRNA downstream 113113 19921471 ~ 19947483 (+) True G184882
TU218828 lncRNA downstream 146236 19954594 ~ 19955040 (+) True G184900
TU218933 lncRNA downstream 456578 20264936 ~ 20265620 (+) True G184988
XM_034308741.1 mRNA upstream 3488 19781228 ~ 19796168 (+) False ushbp1
XM_026918792.2 mRNA upstream 3488 19783734 ~ 19796168 (+) True ushbp1
XM_034308633.1 mRNA upstream 35605 19746882 ~ 19764051 (+) False gtpbp3
XM_034308632.1 mRNA upstream 35605 19746883 ~ 19764051 (+) True gtpbp3
XM_026930531.2 mRNA upstream 101950 19695227 ~ 19697706 (+) False rps15
XM_026928996.2 mRNA downstream 19629 19827987 ~ 19834414 (+) True tax1bp3
XM_026927006.2 mRNA downstream 27787 19836145 ~ 19845238 (+) True LOC113534304
XM_034308398.1 mRNA downstream 27787 19836145 ~ 19845238 (+) False LOC113534304
XM_026926998.2 mRNA downstream 27787 19836145 ~ 19845238 (+) False LOC113534304
XM_034308399.1 mRNA downstream 27787 19836145 ~ 19839327 (+) False LOC113534304
TU218602 other upstream 99382 19695244 ~ 19700274 (+) True rps15
TU218488 other upstream 246134 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other upstream 246134 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218227 other upstream 530434 19254957 ~ 19269222 (+) False adgrl4
TU217312 other upstream 2003037 17795445 ~ 17796619 (+) True G183549
XR_004579107.1 other downstream 19628 19827986 ~ 19834414 (+) False tax1bp3
XR_003403385.2 other downstream 57440 19865798 ~ 19871463 (+) True ccl44
TU218923 other downstream 341613 20149971 ~ 20150894 (+) True G184979
XR_004579103.1 other downstream 1381428 21189786 ~ 21210539 (+) False wipf2a
trnap-agg_1 other downstream 2150530 21958888 ~ 21958959 (+) True trnap-agg_1

Expression Profile