RNA id: XM_026923575.2


Basic Information

Item Value
RNA id XM_026923575.2
length 2416
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC113532271
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13379796 ~ 13397775 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACAGAGCTGTCGGTGTGTCGCCTCAGCTCCTCAGTCACCTGAGCTCTCAGAAAGCGAAGACGGTGTTTtttcttatataataataattttttccatataaatacatatttatttatatatattttcttctcGAATGGGAAAAAACGGGTCTCGATACTTTCGCCAGTCGGAAAATGAATTCTTTGTGAACATTTTCTAACATGCGGACTTTTTTGCTACAGTAAActatataaacatatactggtgaacttttttttttgacgacAGCGTTAAACaagttttgaaaataaatttggATGATTCATCCTCTTCAGGCAAAGGGAGAAAGGACACGTCGACGTGTTTAGAAAACGCACAATGTGTGTAAAGTCGCCTCGTGTGTTTGAGTTGACGGCAGCACGGAGTTGACCATGCTAACCTGCTTTTCTGGACACAGTAACTCGAGTGCTGAGCATGCGGGCATCGGCGGCGCCACCGTGCTCCTGGCCGCCTTAATGATGAGCCTGGTGGTCGTGGTGGTCGTGGGAAACGCGCTGGTCATCTTTGCCTTTGTCGTGGACAAGAGCCTCCGAAATCAGAGCAACTATTTCTTCCTTAACTTGGCTATATCTGATTTTCTGGTCGGGGCGTTCTGTATCCCAGTGTACATGCCCTACATCTTGACAGGCCGATGGATGCTGGGCCGTGGTCTCTGCAAGCTGTGGCTCGTGATGGACTATCTGCTCTGTACTGCCTCCGTCTTCAACATAGTCTTAATCAGCTATGACCGCTTCCTGTCTGTCACCAGAGCTGTGAGGTACAGAGCACAGCAGGGAATGACTCGGCTCGCTGTGGCAAAGATGCTAGCAGTGTGGCTGCTGGCTTTTCTCCTGTACGGCCCAGCCATTATCTTCTGGGAGGATGTAGCTGGTGAGAGCATCGTTCCGGCTGACGAGTGCTTTGCCGAGTTCTACTGCACGTGGTACTTCCTGCTTAGTGCATCTACCTTTGAGTTCTTCTCGCCGTTCATCTCAGTGACCTTCTTCAACCTCAGCATCTACCTCAACATCCAGCGGCGGAACAAGAGCCGCGCAGCTCACCGAGGCACAGAGAAGGAGGACGGCTGGAGGGTGGTGGACGGCGGCGCGTCACCCTCATCCACAGTCTTCTTTGTCAGGACGCGCAAAGTCTCCTCCAGTGAACCGGCGGCTGTTTCAGCGGTGATTGAGGAAGACATGGAGATTTCGCCGTCCTCCAGTGGAGACCCCAGCTGCAGCcactcagtttctctctctctgaagacAGTCAATAAGAAGAAAGGAGCGTGGAGCTGCTGGTTAAAGACACGCATGATCCAGGCACAGGCACCCTCGAGGAATGGGGAGCATTCACGTCTCTCGCGGGACAAGAAGATCGCCAAATCTTTGGCGGTAATAGTTTGTGTTTTCGGTGTGTGCTGGGCTCCGTACACCTTGCTCATGATCATTCGAGCAGCGTGTAGCGGCACATGTATAGAACATCACTGGTACGAAGTCACATTCTGGCTTCTTTGGCTCAATTCCGCCATCAACCCTTTCCTGTACCCTCTGTGTCACAGCAGCTTCCGCAGGGCTTTCACTAAGATCCTTTGCCCCAAACGGCAATCTGTCAGGCCGCACGAGGACACCCCATCCTGCCAGTGACAGCAGACAAGATTTCACACAGTCTGCGATTGTCAGTGGGGATTACGTGAGAATGTTGAGGCAGCAGCCTGTAAGATGCTCGTGTCTGACAAAATCAATGAGACCGTTGGCATCTTGCTTGTGTGGAGTGAAAAAGTTTCTCATTTCCcatagaaaaacattttcattttggattGCCTGTTTTCGTTTTTCAGAAATCCACATTGTCCTTGAAACCCTGTTACCTGGTGAAACTTTCTGAACGTTGGAAAGGAATAATGTTAAAAGTAATGCATGAGCATGTACAGTTCATTCCATCATCCTCTTGATTATCTTCCGTAACAAAGATGTGCATTCAGCTAGACAGAGCTTAGAGTGTAATAATGTGAAGGAAGccagagaaaaataaatcagttttctGGAGACTTTCTCTGCATCCCTTTGCAGCACTCTGAATGTAGTCTGGTGTTGTTTTTGAATGTGAGACAAACTGGTGTTAGTTTTGTCATTGCTAAGGAATGTGACGTGTTTTCACAGGTTTGATTTATAATTTGGAAGGACAGCAGAACTTGAGCAAATGTTCTGttgttttaatgtcattttaacaaataatgACAAATGGATTCCCAATTCAAGTGTGTATGGATGTCTGGACTCACATATGGTGTGTGATTGTATTGTTGGCACTTAAATAATGAATTGTGACAagggtgatttttaaaataatccttGTACATAGTTATATTTCCTCTGCTTCTCAACTGATTTGTTGTTT

Function

GO: NA

KEGG:

id description
K04151 HRH3; histamine receptor H3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214029 lncRNA upstream 77499 13299280 ~ 13302297 (+) True G180833
TU213916 lncRNA upstream 94726 13201871 ~ 13285070 (+) True G180738
TU213946 lncRNA upstream 140213 13236477 ~ 13239583 (+) False aqp12
TU213871 lncRNA upstream 176648 13136137 ~ 13203148 (+) True G180695
TU213678 lncRNA upstream 528617 12850960 ~ 12851179 (+) True G180534
TU214035 lncRNA downstream 4112 13401887 ~ 13406255 (+) True G180838
TU214147 lncRNA downstream 50170 13447945 ~ 13448184 (+) True G180926
TU214166 lncRNA downstream 231920 13629695 ~ 13640963 (+) True G180945
TU214388 lncRNA downstream 699885 14097660 ~ 14100987 (+) True G181136
TU214419 lncRNA downstream 748098 14145873 ~ 14293381 (+) True G181157
XM_034308819.1 mRNA upstream 11538 13319943 ~ 13368258 (+) True impact
XM_026927676.2 mRNA upstream 66349 13308441 ~ 13313447 (+) False cep19
XM_026927683.2 mRNA upstream 66349 13308671 ~ 13313447 (+) True cep19
XM_034308910.1 mRNA upstream 66349 13308848 ~ 13313447 (+) False cep19
XM_034308887.1 mRNA upstream 99284 13277958 ~ 13280512 (+) True LOC117598427
XM_026942260.1 mRNA downstream 28895 13426670 ~ 13430143 (+) True rpl36
XM_026927604.2 mRNA downstream 51684 13449459 ~ 13461109 (+) True ftsj3
XM_034308542.1 mRNA downstream 64505 13462280 ~ 13468477 (+) True lim2.2
XM_034308543.1 mRNA downstream 64505 13462280 ~ 13468477 (+) False lim2.2
XM_026924353.2 mRNA downstream 64506 13462281 ~ 13468477 (+) False lim2.2
TU214031 other upstream 74080 13301255 ~ 13305716 (+) True G180834
trnag-gcc_17 other upstream 104240 13275486 ~ 13275556 (+) True trnag-gcc_17
trnag-gcc_16 other upstream 106179 13273548 ~ 13273617 (+) True trnag-gcc_16
trnag-gcc_15 other upstream 110067 13269656 ~ 13269729 (+) True trnag-gcc_15
trnag-gcc_14 other upstream 112019 13267707 ~ 13267777 (+) True trnag-gcc_14
TU214157 other downstream 97815 13495590 ~ 13495985 (+) True G180936
TU214440 other downstream 767251 14165026 ~ 14174218 (+) True G181175
TU214656 other downstream 1163915 14561690 ~ 14562966 (+) False LOC113540185
TU214729 other downstream 1192144 14589919 ~ 14594615 (+) False ankrd29
XR_004579085.1 other downstream 1224768 14622543 ~ 14646822 (+) True si:dkey-121a11.3

Expression Profile