RNA id: XM_034308542.1


Basic Information

Item Value
RNA id XM_034308542.1
length 1474
RNA type mRNA
GC content 0.47
exon number 6
gene id lim2.2
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13462280 ~ 13468477 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agaaataacGCATGGCCTTTCTGGATTTCCGTAAATGAccttttatagctgctataatgtaagtaataacaggaactaacttgtcatGAACGGTCCATAAtgataaatgtaactataaatggctaaaaagcaCATCATTCATTACTGAATTGTTATTGTAGGGAGATTGCTGGGGAtattagaggaataaagcactttaggttgtgctgttataggaaaatgatcagccTCAGGGTgtggccacatcacaccactcttcATTAGAATTCTGAACTGTGAAAAGTCCAGAGCAAGGTTTTTCCAAAACTTTGCATATTTTTATGAATGTGCCAGTTTGTATTCTTGATCTTTAAtacatgtgagtgtgtacagCTGGGCTTTTCCCTCCTCCATACATGAtctgaaggagtgtgtgagaaatgtTCGTAGATAAGGACATTGCACGTCAGTACAGCGGAGGCAGAAGACTGGCGTGATTGTGCACAAGCCGCTGAATGACAGAGCAAGCGAGAGAGGGGGATTATCTCATATCTCACATGTTGCTCTGGATCATTCCCCCCTTTGTGGCTGAAACAATGACGGCTGAGGGTAGAAGGCTTAAAACTGCGAGGACGggatgcaaacacaaacacacaagcgcTGGGGGACACAACACGCTTCCAAAAAGTGTTTGATATCAGTACAGGAAAGAGGTGGACACTACAGACACTGACAGAAGACGATTAACACACAATGTGTATGTTTAGCCTCTAACACGCCACCTACAAGgaggagtgtgtgtgttttctcagcgTGTGTTAGGACTCTGTCCTGGGCCCATCCTCCATGCTCTACACTCTGGCAGGAGGAGGCACGGTGAGTGGCGTCGCCGCTCTCGTGCTCCTCATCGTTTCCACAGCCACTGACTACTGGATGCAGTATCGCTACTCGGGAAACTTTGCCAATCAGGGCCTCTGGAGGTTCTGCATCAACAACAAATGCCATGCTCACACGCTCACTGTGGCCTTCTGGGATGCCACGCGGGCCTTCATGCTGCTGTCTGTGCTGAGCTGCTTCGCCGGCGTGGTGCTAGGCCTTAGTGCCTTCTCCAACAGAACCAAAAACACGAGGGTGAGAACTGCAGGAATCGCTCTACTGCTGTCTGGTTTCCTTGCACTGTTAGCTTTGGCAATCTACACTGGAATGACTGTGAACTTCTTTGGCAAGCGCTACATTGACTGGAGGTTCTCATGGTCCTACATCCTTGGCTGGATCGGCACCATTCTGACTATAACAGCtgGCATCCTCCAGATTTGTGGCTACCAGAGGAGCACTGCTGAACCAGCACCTCAAAATCCTCCAGACAGCTGAATTTCTCCTGAGCAGTAACCTTCAGGCTGAGTTGCAACTCCTGCAAGATGACTTCAGTATCTGGACTCTTTAAAACATAGCAACAATAGCAACATATGATCTGGCtgaaataaagtattttttg

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214147 lncRNA upstream 14096 13447945 ~ 13448184 (+) True G180926
TU214035 lncRNA upstream 56025 13401887 ~ 13406255 (+) True G180838
TU214029 lncRNA upstream 159983 13299280 ~ 13302297 (+) True G180833
TU213916 lncRNA upstream 177210 13201871 ~ 13285070 (+) True G180738
TU214166 lncRNA downstream 161218 13629695 ~ 13640963 (+) True G180945
TU214388 lncRNA downstream 629183 14097660 ~ 14100987 (+) True G181136
TU214419 lncRNA downstream 677396 14145873 ~ 14293381 (+) True G181157
TU214415 lncRNA downstream 753774 14222251 ~ 14240535 (+) False LOC113531387
TU214510 lncRNA downstream 892311 14360788 ~ 14361372 (+) True G181233
XM_026927604.2 mRNA upstream 1171 13449459 ~ 13461109 (+) True ftsj3
XM_026942260.1 mRNA upstream 32137 13426670 ~ 13430143 (+) True rpl36
XM_026923575.2 mRNA upstream 64505 13379796 ~ 13397775 (+) True LOC113532271
XM_034308819.1 mRNA upstream 94022 13319943 ~ 13368258 (+) True impact
XM_026927683.2 mRNA upstream 148833 13308671 ~ 13313447 (+) True cep19
XM_026946151.2 mRNA downstream 28201 13496678 ~ 13512874 (+) True gipc3
XM_026927615.2 mRNA downstream 714742 14183219 ~ 14187331 (+) True ticam1
XM_026940367.2 mRNA downstream 720784 14189261 ~ 14203732 (+) True timm44
XM_034308961.1 mRNA downstream 720975 14189452 ~ 14203732 (+) False timm44
XM_034308826.1 mRNA downstream 753741 14222218 ~ 14240541 (+) False LOC113531387
TU214031 other upstream 156564 13301255 ~ 13305716 (+) True G180834
trnag-gcc_17 other upstream 186724 13275486 ~ 13275556 (+) True trnag-gcc_17
trnag-gcc_16 other upstream 188663 13273548 ~ 13273617 (+) True trnag-gcc_16
trnag-gcc_15 other upstream 192551 13269656 ~ 13269729 (+) True trnag-gcc_15
trnag-gcc_14 other upstream 194503 13267707 ~ 13267777 (+) True trnag-gcc_14
TU214157 other downstream 27113 13495590 ~ 13495985 (+) True G180936
TU214440 other downstream 696549 14165026 ~ 14174218 (+) True G181175
TU214656 other downstream 1093213 14561690 ~ 14562966 (+) False LOC113540185
TU214729 other downstream 1121442 14589919 ~ 14594615 (+) False ankrd29
XR_004579085.1 other downstream 1154066 14622543 ~ 14646822 (+) True si:dkey-121a11.3

Expression Profile