RNA id: XM_034308486.1


Basic Information

Item Value
RNA id XM_034308486.1
length 5108
RNA type mRNA
GC content 0.46
exon number 33
gene id mcf2l2
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17672171 ~ 17751502 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGACTCACGGCACCGGCTCTAAGAGCCGCTCAAAGTCCTCCTGAACATCATTTACATGTGGACGCACATGATGAATAATTAACATCACTAGTCCCACTGTCTGCTGCTTTTTCATTGTAGCCTCTTCTAGGATTTACTCTTCTAGGATCAGCTGCTTTCTTTTGCTTGAGAGGTGTTTGACAGGCTGGGAGTGGCTGCCTGCTGCTCTGtgtgagaggaggagagagagccctgtagtgcagcaggagaagagaggagaggaaaggaaagaagaggagaggagaggtgaGTGAGGCTGCCCTGAGATGCTCTGCTggctggaggaggaagagatgTCTGTGCAGGAGTTCCAGGAGCGCGTGGGCTGCGTTATCACCCATGTTGATGAGATTATGCAACAGGAGATAAGGCCTCTGCTGGCCGTGGACATCATTGAACAGCTTCACAGGCAGTTTGCAATGCTGTCAGGTGGACGAGGGAAGGATGGTGCCCCGATCATTACTTTCCCAGAATTTTCTGGCTTTAATGATCTTTCTGATGAAGACTTCATTAATGTAGTCACATATCTGACCAGTATACCCAGTCTGGATGCAGCCAGCATCGGTTTCATCATTATCATAGACCGCCGGCGGGACAAATGGACTTCGGTGAAGGCCTCGCTGGCTCGAATAGCAGGGGCATTTCCAGGAAACCTGCAGCTAGTCCTAGTTCTGAGACCCTCACGATTCATACAAAGGACCATTGCTGACATTGGCATCCGGTTACACCGTGATGACTTTAAAATGAAGGTACCGATCGTCATGCTGAATTCCTTGGCAGATCTGCACGGCTATGTGGATAAAGGACAGCTGACGTGTGAATTAGGTGGAAGCCTGCAGTACTGTCACAGTCAGTGGATTCACCACCGCACAGCCATCGAAAACTTTGCTGTGACCGTAAAGACCACAgcccaaatgcttcagaaattTGGAACAGACTTGGCAGAAACCGAACTACCCAATGACGTGCAATGCACCAAAGATCTCCTGACAGCTCACGCAGACAAACACGACAAGCTTCAGGATGAACTGAAGTTGGCTATGAAACAAGGGACCACATTACTTTCGTGTATCAAAGATCAGGCCAGTAAAGCTGAGAACTACAAACTAAATCCAGACGAAATGGAAAATCTAACCACAGTTGAAAGgTTGTTAGCTCAGCTGGATGAGACGGAAAATGCGTTTGAACAGTTCTGGTCTAAACATCACTTGAAGTTAGAGCAGTGTTTGCAGTTACGACATTTTGAGCAGGACTTTAGAGAGgtgaaaCTGTCCCTGGACAGCCTGATGGAGACTTTGCTGGCACTTTCAGACACTGGAGATGGGGCCGGTCGCATTGAGCAGCTGCTAGAAGACCTGAAGAGCCTGCAGGACAGAGCTCAGGAATCTTTGGAGAAGGCGCAGCTGCATGCACTGCACGGCGACCAGTTAATCCAGAGCAACCACTACGCAGTGGACTCCATCCGGCCCAAGTGTGTGGAGTTGCGGCGAATTTGTGACAACTTCAGCAatgaagccaaaaaaaaatatgacgtTCTGTCCAAATCACTTGAGATCCATACATGGATAGAGAAGGTGAGCCACTGGTGCGAGAATGGCGTGTACCTGCTGGCCTCACAGGCTGTAGATAAGTGCCAGTCTCAGGAGGGGGCAGAAGCGGCTCTGCAGGACATTGAGAGGTACATGGAGACGGCTAAGGAGCAGCATCTCAGTCAGCTCAAAGACCTCTACAACCAACATGAGATGGCACTCTCTGATCTCATGAAGATTAAAGTGCAGACTGCACTGAAAAGGCTGGAAGAAGTGAACGAGATGTTTGAGAAGAGACACGTCAGTCTAAAGAAGCTGTCTGCCAAGCAAACCAGGCCTGTGCAGCCTGTGGCTCCACGTCCTGAGTCTTCTCCCAAGCGTCCTTCACCTAAAAGCACACGACCAACAGGCTCTGCACCAAACCGCAGAGGTCCAGAGAATAGTTCCACCAAGCATAACACTGATACTGAGCTAGCAAGGAAGAAAAACATTCGCAAGACTAAAGGAGGCATCAAGATTGAAGTTATGCATGAGGAGAGTCAAGGAGGTTCGAGCCATGTTCTCGTGAGCAGCGAGACGGAGGAGAGCCTGTCCAGCAGGCGGCGACACATTATGAATGAGCTGATTGAGACGGAGAGACTCTATGTGGAGGAGCTCCAAAGTATAATTGAGgGTTACGCTACAGCACTGGATAATTCAGAAATGATGCATCTAATACCGCCTGTGTTGGAAAACAAGAAAGATGTGCTCTTTGGCAATCTTGCTGACATCTACACCTTTCATAATAGGACATTTCTCAAAGAGCTGGAAAATTGCATGGAGAAGCCAGAGTTAGTGGGAACATGCTTCTTGAAAAGAAAAGAAGAGCTGCAGATCTATGAGAAATACTGTCAAAATAAACCTCGGTCTGAGGCTCTCTGGAGGCAGTGTGGGGACAGCCTGTTCTTTCAGGAATGCCAAAAACGGTTGGACCACAAGCTCTCTTTAGACGCATACCTGCTAAAGCCTGTGCAGAGAATCACCAAGTACCAGTTACTGTTGAAGGAGATGCTGAAATGCAGCAAGAACTCAGAGGGCACAGCGGAACTAGAGGAAGCTCTGGCCACCATGTTGGACATCATAAAATCTGTCAATGATTCAATGCATCAGATTGCCATTACTGGCTTTGAGGGTAATTTGAATGACCTGGGTAAGCTGCTCATGCAAGGCTCTTTCAACGTGTGGACAGACCATAAGAAAGGTCACAATAAAGTAAAGGACTTGGCACGCTTCAAGCCCATGCAGAGGCACCTCTTCTTGTACAATAAGATGATTTTGTTCTGCAAGAAGCGTGAGGAGAACTCAGATGGTCATGAGAAATCCCCATCCTACAGTTTCAAGCACTCTCTGAAGATGAGTGCTGTTGGAATCACAGAGAATGTGAAAGGAGACGCCAAGAAATTCGAAATCTGGTACAATGGGAGAGAGGAAGTCTACATCATTCAGGCCTCCTCCATGGACGTGAAGAACACGTGGGTGTCCGAGATCAGGAAAGTACTGACGGGCCAACTGGAGGCGTGCAAAGAGGCAAGTCAGCTTCATCAAAGAATCACCGAAAACATTTACCATGCTCCCATGAGGAATGTTCGCAAAGTggccctgaggcagtcagactCCTCCAGCCCAGAGACAGGCTACAAGCGCAGTGACAGTGGCCCCAACATGAGGCAGAAACGAGCTGGTGCTATGTCCAACCTTAGTTCAGACCCATCCTCAGCTTTGGCTAGAAAGCGCTTCACCTTACATGGCCTGTCCAATCGCAGGTCCCTGCCATCAGAGCCGACGCCTAAGGAGGCCGAAGTCACTCGCCGCTTCTCTTTAGCCTCCTCCCTCAGTGCTTCCTCTACCACACGCACAAAAGGTCCTCTTTCTGCGACCATTAAAAGCAAGAGACACCAAATTAAGAGTGACCCCACTCCGTTTGGTTATCAAGATTCTTTGCGAGACGCTCTTCCTGCTGACAGCAAAAATAAAGGTACAACAAGTACCAAGCCTACTGTGCCTAGGTCCACCTCTCAGCCAGgATGGACCCAGCGCCGTTTACCATCAATGGACACCGAAGACTTTGAGACCATCCCATCCAGTGCTGAAGAGCTCTCAAATTCCTCAGACGGAGACGAGGACAGCAGTAACAAAAATGGTGAGCACAATCGCTTTCAGGTGCAGCTGACGTACGAGTCACGAGCACCGCAGGAGATGTCGCTGGAGCCTGGAGATTTAGTACAGTTCCTAGAAGAGGTTGAGAATGGCCACTGTGCCATGCATTGACGAACCACGCAGGATCCCGCCCTGCTAAACCTTCGCGTTACTGTAAAATGAAGACAATCTATTGCTGCTATTCCCACTTGTGCCATGTTGAAAAGAGAGTGTGCAAAGCACTGGAGCTTGGATTTTTTGGCCTTTGGACTCTGAACTTTGCTGTCACGGCTAGCTATGATTTAGCTGTGCCTTAGCAGCTAATCAATGCTTTGACATGTTCTAAGAGGAAAACTGGAATCCAGTGTGTTTCAAAGCAGTGTTTCAGCATTGAGTCACGTGCTGCTTGTTTTTAGAAACAGGCCTGATCATGTCATGATGCTGcgtgaaagtgagtgagagagagagaaaaagactcTAAATTATCCTGTCCTGCTGAAATTACCACTCTGAATTTTCTTATAGCCTGGATCAATTTTGTTTATCAAAGACATTCAGATGGAACAGAAGTCATCTCAGCAAAATTACCTTTTTTTGATTCTGTTGGTCAAAAATGCAGCAATTTAGAGTAAAAATAGCAATCtatgatgtgtatgtgtattatagAAGATTTCTGTACTCTTTTGTATTTGATGTCTTATTTGTTCTGTAAATGCTCTTCAAACATTCATTTCCGGTTCCACAAATGTCTCTCTTGGGGATGTTTAGCCTCTAAGCAATTTTATCAGTCATCTGATATTTTATTGTAGCACAAATATTCCAACTGTACTGTAAGAACAAATAGTATTGCTATATATGAACTTTAtacctttttttattcaaacaaaTTCAGTTTCTTGTCAAGAAATCAAATCAAAGACAAATCACTCTCTGCAGTATATGTGGCCTTCATATTTTAAAACGGCAGAACGTTTTGGAGAATGCAATGACACCTTGTTACTGAAAGTATAATAGTCTCACAGCAagaaatatttcacaaaataagAAAGGTTGTTCCATTATGACATCCCtgttgaatgtaaaaaaaaattgaaacgTGTCTTATTGATTTTTAAAGTGGAGGCTGTAAACATTTTCCAAGACTGACCACACATCTGTATATATCCTAATCTGATTGAATCGTTTACTGACGATGAGTCTAAGCACAAAAACGAATTGTGGAATGCAAAGTTTATTGCTGATGATTATAAtacactgttatttattaaGAGAAGCTGATGCTTTTAACTGGTTCATATGGTCAGTGTATTACCgtctacattttcaaacatatgATTAAATACATACAAAGTAAAATCTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216676 lncRNA upstream 88386 17577642 ~ 17583785 (+) False G183058
TU216673 lncRNA upstream 92057 17577740 ~ 17580114 (+) True G183058
TU216632 lncRNA upstream 221435 17450457 ~ 17450736 (+) True G183032
XR_004579106.1 lncRNA upstream 248851 17416730 ~ 17423320 (+) True LOC113535983
TU217332 lncRNA downstream 136625 17888127 ~ 17888353 (+) True G183566
TU217344 lncRNA downstream 151283 17902785 ~ 17902984 (+) True G183578
TU217351 lncRNA downstream 164501 17916003 ~ 17916210 (+) True G183585
TU217463 lncRNA downstream 415120 18166622 ~ 18237120 (+) False LOC113526284
TU217556 lncRNA downstream 678004 18429506 ~ 18437961 (+) True G183787
XM_026915944.2 mRNA upstream 3039 17648935 ~ 17669132 (+) True phka2
XM_026915964.2 mRNA upstream 3039 17648935 ~ 17669132 (+) False phka2
XM_026915954.2 mRNA upstream 3039 17648935 ~ 17669132 (+) False phka2
XM_026915973.2 mRNA upstream 3039 17648935 ~ 17669132 (+) False phka2
XM_026927190.2 mRNA upstream 27059 17638789 ~ 17645112 (+) False senp5
XM_034308929.1 mRNA downstream 2674 17754176 ~ 17781814 (+) True ect2
XM_034308930.1 mRNA downstream 2674 17754176 ~ 17781814 (+) False ect2
XM_026927825.2 mRNA downstream 2676 17754178 ~ 17781814 (+) False ect2
XM_026927834.2 mRNA downstream 2676 17754178 ~ 17781814 (+) False ect2
XM_026928425.2 mRNA downstream 126738 17878240 ~ 18133981 (+) False nlgn1
XR_004579126.1 other upstream 35776 17598464 ~ 17636395 (+) True anos1b
TU216628 other upstream 227112 17439796 ~ 17445059 (+) False LOC113536271
XR_003402991.2 other upstream 456288 17196280 ~ 17215883 (+) False LOC113528769
trnak-cuu_26 other upstream 642227 17029872 ~ 17029944 (+) True trnak-cuu_26
TU216450 other upstream 749249 16913258 ~ 16922922 (+) True G182877
TU217273 other downstream 22211 17773713 ~ 17781813 (+) False ect2
TU217312 other downstream 43943 17795445 ~ 17796619 (+) True G183549
TU218227 other downstream 1503455 19254957 ~ 19269222 (+) False adgrl4
TU218488 other downstream 1780579 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other downstream 1798880 19550382 ~ 19553522 (+) False si:ch73-40i7.5

Expression Profile