RNA id: XR_003403385.2


Basic Information

Item Value
RNA id XR_003403385.2
length 1399
RNA type misc_RNA
GC content 0.39
exon number 5
gene id ccl44
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19865798 ~ 19871463 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGGAGGAGGTGGGTGTGTTAGCATGTGAGAAAACGACAGCAGGCAAAGGGAGGGAGTCAGTGAGTGgagagatataaaaaaaatccctccaGAAGATAGCAGATAACacagtcatttattttaaacagaagaTTGACCATGTTGCTGCAGACCATCTTCATGCTCTCTGCAACTGTTTTCTTTGGATATCTGGAAGGGAAGGGTGTTCAGATGCAGCGGGACGTTCAGTGTTGTATGCAGTACTCGCAGCAGAATGTACGGACCAAAGACGTTCTTAAGTTTGAGGTGCAGACGGAGGGGCCAGACTGCAGCATAAAAGCCATCATATTATACACTAAGAAGGTGGTGAAGTGTGCAGACCCCAGGGACAGGAAAGtgaagaggttactgaagaaaCTGAGGCAGAGGGCCAAAGCCCACAAGTCCATGCAGGTTCTGCCGCAAAGACACCTGCCTGTCATGTCAAAGAATCTAGCCACAGCGACATAGAGtccccggttcgatcctgatCTCGGGTTACTTTCTGTGTGGGGTTGCTGTTCATGTTCTCCCATGTCCGCaTCCAGTAAATCATGGCGAGAATTTGACTGACCACTTCAGCCTTTTCATCTGTCACTGTCTTCTTGAACGTATGTAGATCACTGACTTTCAATACAGAACAGTATGCTGTCCCTCTaagatatgtaatattttagatCTCTTTCTAAACTGACTGTTAATCTATATATGCCAAAGCATTATTTTTAACTCTGTACTTCAAGCTTGTTCATTCtctatatacattatatgtgtATCTTATAAGCTATACAAGCTGTTATATAGAGTTAAAGTGACATGACTGTTCCTGGCTCAAAAATAGTGCAAATACATATTCTATTATGTATGGTAATGcaatcattttttatatatacagaaatattGGAAAATGCTGTGTGCATTGTTTTTattgggaaaaaagaaaggtggagttctttgtctttttttgttccaAAAGGACACATTAGGCACACacagatgttttaaaaaaaaaattttaaaatggagTGTTGGCGCTATAGTTGTTTTACTTTGGAAGGATAAAAAAGGTTACTAAAAGTGTAGCATTAGTCAGGTTTTGCTGAAACAGTGGCCATGGACAAGTCTGATTGTTACTaacataaaatctgtaaaagtgcagtacTGTGATGTTTCTCAGAGCAGTAACGAAACTAGCTTGACACCGACACAACCTCATGACTACGACTTAAATATATTATGCAAAATAAGAACTAATCTGGCGTATGGTCAGAAATTTTGGTTTCTACAGCTGGCTAAGAACCTGATAACAACTATTTATGTTGTCAAATGAAAAACTGTTACTTAATTTGCACCTGATGTTGTCTAGTGGCTGACTTTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218759 lncRNA upstream 20998 19844047 ~ 19844800 (+) False LOC113534304
TU218741 lncRNA upstream 56544 19808713 ~ 19809254 (+) True G184823
TU218615 lncRNA upstream 161548 19703635 ~ 19704250 (+) True G184718
TU218499 lncRNA upstream 201307 19661092 ~ 19664491 (+) True G184617
TU218481 lncRNA upstream 310980 19553977 ~ 19554818 (+) False si:ch73-40i7.5
TU218810 lncRNA downstream 50008 19921471 ~ 19947483 (+) True G184882
TU218828 lncRNA downstream 83131 19954594 ~ 19955040 (+) True G184900
TU218933 lncRNA downstream 393473 20264936 ~ 20265620 (+) True G184988
TU218932 lncRNA downstream 394245 20265708 ~ 20320904 (+) True G184987
TU218936 lncRNA downstream 395136 20266599 ~ 20271344 (+) True LOC117598445
XM_026925573.2 mRNA upstream 5512 19854685 ~ 19860286 (+) True pole4
XM_026927006.2 mRNA upstream 20560 19836145 ~ 19845238 (+) True LOC113534304
XM_034308398.1 mRNA upstream 20560 19836145 ~ 19845238 (+) False LOC113534304
XM_026926998.2 mRNA upstream 20560 19836145 ~ 19845238 (+) False LOC113534304
XM_034308399.1 mRNA upstream 26471 19836145 ~ 19839327 (+) False LOC113534304
XM_026929380.2 mRNA downstream 32695 19904158 ~ 19911209 (+) True ctns
XM_026929071.2 mRNA downstream 88238 19959701 ~ 19964557 (+) True LOC113535596
XM_026926350.2 mRNA downstream 98094 19969557 ~ 19971347 (+) True gadd45ba
XM_026920781.2 mRNA downstream 205150 20076613 ~ 20103052 (+) True apc2
XM_034308563.1 mRNA downstream 234247 20105710 ~ 20120357 (+) False zgc:113223
XR_004579107.1 other upstream 31384 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 165524 19695244 ~ 19700274 (+) True rps15
TU218488 other upstream 312276 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other upstream 312276 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218227 other upstream 596576 19254957 ~ 19269222 (+) False adgrl4
TU218923 other downstream 278508 20149971 ~ 20150894 (+) True G184979
XR_004579103.1 other downstream 1318323 21189786 ~ 21210539 (+) False wipf2a
trnap-agg_1 other downstream 2087425 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 4061403 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 4062669 23934132 ~ 23934203 (+) True trnaq-cug_11

Expression Profile