RNA id: XM_026925040.2


Basic Information

Item Value
RNA id XM_026925040.2
length 1694
RNA type mRNA
GC content 0.44
exon number 11
gene id ctdspl3
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19642225 ~ 19648916 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGCGTGGCTCCGCCCCTACCGGCATATTTAAATCGTTAAAGCGGACTGGCCTGGGCCTACACAGAatcataataacaacaataacaacaacaatactggagagtgtttttcttttagcaTCAGGATTGTCACTGTTCGACTGGAATCTAAGCTAGCTGAAATAGTTCGCTACGGTTCCGTTAACATGAGACTTCGGTCGAGAGTCATTTCTCTTGAGAGCCCGTTGTCTCAGCCCAGCACCCCGCGCCGTCGGCGGCCGGATCCGAGTCGAGCGCCGCGGATCGAGCAGAGCCAGAGCCAGCCTCAGACCCAGAGCCAGAGCCAGCCTCAGgaTGTCCAAGTTTTAAAGGATTGCTCGAATTTGTACTGTGATGCCATCCCGACTGCAGTGAAGCGCCCACGCTTAAGACATGGAAGGAAAAGGGTTCTACCACTGCGGGAGTGTAAAgAGTCTGACTTCAAGACACCAGTGCGGCATCTCCGGGAAAGGCATTACTCGTCAGTCAACCCTGCTGCAGCACGTAGCCTTTACTCTCCTGTAGTGCGTTTCGTCACACCCACGAAAGACAATGAGAGGACAAGGGGCGGTGCAGTGTTCAGCCCTGAACAGTGTGTGTTCGGATACAGTGCCGTCAGCTCCCTGTCAGAAGACGAGGAGAACGATGAGGTGTTCAGCCCATTCACATTCATCAAGAACATTCCAAACCAGTCGCAACAGTCCAGAGCAGTTTCTCCTCTCCGGGACATACCACCAAAGACCAGAAGTACACCTGCAGCCACCATGGTGCTTGATTTGGATGAAACCCTCGTGTTCAGCTCCCTCAATAGAATCGAGGATGCAGAGTACACATTTAACACAATCTTTCAAGATCAAGAGTACAAGGTCTATGTGGTTCTCAGGCCATATGTGAATGAGTTTCTGCAAGCCATGGTGAAGCATTTTGAGATGTTTGTTTACACTTCTGCTAAAAAGGAATATGCAGAAATGATAGTGGACATACTGgacccaagaaaaaaaatattcagACATCGTCTGTATCAGGATGACTGTGCATGCGTTCTTGGGCACTATATTAAGGACTTGGAGGTGCTGGAAAGAGATCTTTCAAAAACAGTGATTCTGGACAACGCACCCCATACTTTCCCATACCATCTGATGAACACGATTCCCATAAAGAGCTGGTGTGGAGACAAAGAGGACAAGGAGCTCCAGAGGCTCATACCTTACTTGGAGAAGCTCGCCCAAGCTaatgaCTTCAGGACTGTGCTTAAGAGGAGGACAGATCATTTTCACAGCCTGCTCACTGAAGACTAAaatcctgccttttttttttttttttttttttttttgtatatattttcatgTACATAATAGTATAGTACTTTAGATGTAATATAGGCTGAATAATTTCAAAATGATAGCCATTTTTGCTATATATGCTTTAAAGGAAATACAGCTCAGCCTCATTTGGGGTGATTGCTTTAATTTGAAGTGTTGTGCTTCTTAAATTATTGTGAACATTtgattttgctaatttattattGCTGCTTTTTACATGACACTTTAAAATGatagtgtatataattataattttcacAGTTGTACACTGTTCAGATACCTACTTTTTAAAATGCCTGGATTCTGCCACTTCCTTAAatttcttcaaaaaaataaactttggtCTTTAACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218491 lncRNA upstream 39586 19548663 ~ 19602639 (+) True G184614
TU218481 lncRNA upstream 87407 19553977 ~ 19554818 (+) False si:ch73-40i7.5
TU218492 lncRNA upstream 91899 19548663 ~ 19550326 (+) False G184614
TU218480 lncRNA upstream 96723 19526877 ~ 19545502 (+) False LOC113546543
TU218362 lncRNA upstream 154447 19486372 ~ 19487778 (+) False smim7
TU218499 lncRNA downstream 12176 19661092 ~ 19664491 (+) True G184617
TU218615 lncRNA downstream 54719 19703635 ~ 19704250 (+) True G184718
TU218741 lncRNA downstream 159797 19808713 ~ 19809254 (+) True G184823
TU218759 lncRNA downstream 195131 19844047 ~ 19844800 (+) False LOC113534304
TU218810 lncRNA downstream 272555 19921471 ~ 19947483 (+) True G184882
XM_034308939.1 mRNA upstream 4034 19607447 ~ 19638191 (+) True arid3a
XM_026935427.2 mRNA upstream 4034 19607447 ~ 19638191 (+) False arid3a
XM_026935519.2 mRNA upstream 4034 19607447 ~ 19638191 (+) False arid3a
XM_026922559.2 mRNA upstream 36611 19599263 ~ 19605614 (+) True LOC113531697
XM_026922570.2 mRNA upstream 44833 19587328 ~ 19597392 (+) True r3hdm4
XM_026922030.2 mRNA downstream 3922 19652838 ~ 19659420 (+) True ndufs7
XM_026916844.2 mRNA downstream 27300 19676216 ~ 19691780 (+) True dazap1
XM_026916854.2 mRNA downstream 27304 19676220 ~ 19691780 (+) False dazap1
XM_026916861.2 mRNA downstream 31909 19680825 ~ 19691780 (+) False dazap1
XM_026930531.2 mRNA downstream 46311 19695227 ~ 19697706 (+) False rps15
TU218488 other upstream 88703 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other upstream 88703 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218227 other upstream 373003 19254957 ~ 19269222 (+) False adgrl4
TU217312 other upstream 1845606 17795445 ~ 17796619 (+) True G183549
TU217273 other upstream 1860412 17773713 ~ 17781813 (+) False ect2
TU218602 other downstream 46328 19695244 ~ 19700274 (+) True rps15
XR_004579107.1 other downstream 179070 19827986 ~ 19834414 (+) False tax1bp3
XR_003403385.2 other downstream 216882 19865798 ~ 19871463 (+) True ccl44
TU218923 other downstream 501055 20149971 ~ 20150894 (+) True G184979
XR_004579103.1 other downstream 1540870 21189786 ~ 21210539 (+) False wipf2a

Expression Profile