RNA id: XM_026925078.2


Basic Information

Item Value
RNA id XM_026925078.2
length 4281
RNA type mRNA
GC content 0.39
exon number 3
gene id fgf22
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16179542 ~ 16207820 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGACCCACCCATCTTCATTAGTCCCCCTGATACAAGCCCAGCCCAGGATAAAATGCAAGGGAAGAGTGAGCCACCCCACCAAAGAGCAGACAGCAGGGCAAAGAGAAAGAGCTTGGACACCCAGCTACAGCTTTACAGCCTCTTTCGGTCACACAGACGTGCTCTCACtgcttgttctctctctctctctctctctctctctctctctgtctctcctgctccactctcactccctctctttgacacacacacatagacacacaattTGCTCAACTCATTCACAGACACGGGTCAGGCGGCCTCACGTTTCACCTTGCTCTGCCTCTGGCTGAAAGGAGAGGGAGCCTCTGCAAGGTGCAGCCATCCCACAGTGGTTTCACAGCCGGGTAAAGTTAAGTCAAGAGACCTGAGCACTCCAGGGAAACTTGAGAAGAGCTAGAACCTTCTTTGGAGATGGAATTACAAAGAGCTACATCACCTCTGCAGTGAAGGACCAGGACAACCAGGCACACAGACTCAAGATCTCTGTACGTCAAATTCTGACTCACGTCAATTTGTTTTGCTATGCTCTTTCCGAATGGTTCCTGGTGAAAGCAGCTGCTGCTCACAGGGACTGTACGCAGTGGGGTGGCGAATGGGGAGCAACATCATGCCAGCTGTTTGTGCAAGGTGCACCTTGGGAGTGTGACCCACCATGTGCAAATGGTCGGCGGCCGTTGCTGCTCACTGCGCCGACCTCACCTCTATCGGCCCAGCCCATATCAGGCTACCTCTTCTGCCCGGTGCTCTCCCTGTACGCTTTGCATGCCTCTCCTTGCTCTTCTTTCTGGCCAGTGCAGCACTTGCAGGATGCCCGGCCGGACTGGGTCATGACCCACTGCACGTGCTGGCACGGAGCACAAACTGCTCATGGACTCTTGAACGCCACACACGCAGTTACAACCACCTGGAGGGCGACGTGCGGCTACGGCGCCTGTATTCCGCTAACAAGTTCTTCCTCTGCATCGACAAGACAGGCAAGGTGGATGGCACACGGCGCAAAAACTATCCTGACAGTCTGATGGAAATCCGATCTGTTAGTGTGGGAGTTGTCGCCATCAAATCTGTCAGCACCGGCCTGTACTTAGCTATGTCCAAAAAAGGCACACTCTTTGGATCGGTAAGATATAGCCCAAGCTGCAAGTTTAAGGAGCGCATTGAGGAGAATGGCTACAACACGTACGCGTCCCTGCGCTGGAAGCACGGCGGGAGACAGATGTTTGTGTCACTGAATGGTCGAGGGAAGCCACGGAGGGGCCATAAAGCTCGACGGAGACACCCTTCCACTCACTTCCTCCCAATGCTCCCAACATAACTGCAATCtctaattagcttttttttattattattaatgtcatacacatatatagctgtatatgtatgtttgcAGAGGATTCTTTctacataaatttttttttttgcattgtcaCATAGTATATTAACTTATTCCTCCATCCCTCTTAGCTTAAAGCCTCATAAAGCTTTTATAAGGTGTTTAATATTATACATAAACAATTACCTGCCATATTTATGTTCTTGCTGGAGAAACTAAGCATTTACAACATCTCTAACCAGCTGTTGTAAAACACATTATCATATTTACATGACAGCAATAGACTAGTAGTTAACATTTCAGAAACAAAACTTCCCCAAACCCCTTTTTTTCTCAGATATAATGGAAAGGTATTTGTGTTGTAACATTTGTGTCTTCAGTTTTGACAAAAacacgtgttttttttttccaagtttttGGTGTTTGCTCAGATATGTATTTTTATGCCATGTGTATAAATAGGAGTGGAAGTGCTTCTAACATCTTTGCTACAATCAATCTACACTTAGATTAAACAAAGTTACATAGAATCTTAAAGGGTTATCAGGTTTGTCCCTTTGAGGGAACCCTTAACAGTTATATGTAGAACCCTAATTCTTAGGGTTTTTCTTTCAGCTGataaaagtatttgaatattattagtatttgaatatttgaatatatttgtacatttgaattattttcctaaatttcattacataaaattccacttttttctgtggtttatttaatgtatttacattttgccaatgtttttctttgttttgaacttgtCAGAGAAAGGATTTACCTTTAAAAACATATCATTCGAAGTTTCAGGTTATGGTTTTGTGATTATAAccataaaaacaaatcatagAAATGCAGATTTTACATAAATTATGCCAAAAGTGAAGCGTTCTGGATTCCCAGGGAATGGTCAAACTCATCATTTAGCCAGTCACGCTCACACCATGACCAGCTACATCTGAATTTTTTATATTCCACAGAAATAGCTAAATTCCTGTTAAGCAGCTCACTTTGCCAGcaagctagcattagcatagaCTAGGCAGATCATTAGCTACATAGTTAAACTGGGCATTGAGTTGTTAAGATCACTGTAGAAATGTAGCTATTTTAGTAgaatataaaacttttttatttgtttaatgactCATCTAATTTTCTCTGGATGATTCACCTTTGGCCTATTTATATAAATTCTGTATTTTTGAGTtaagattttgattttttttttaatctgaaaaacATAACCTGTTGTTcttcaaattttgtttttaaagaaaaatcttaATCAAGttccaaacaaagaaaaaaaaacatttaataaatgtcataaaaaCACCACAGAATAAGAgaattgtatttaatattatgtttttatatttcaaatatacaaaattcatcttcacatacttttgtcagcttctgagctccacatttcCAAGTATCGTTTTAGAGTGCTAGTTAACCATCCGAAAAACACtagaggaacctttttttttaaagactgtaGAGTGATATCAGGActaaccacaacacacacatagattGTCTAGATCAGGAGTTTATAACTTTGTAATGTCGAGTTTTCTCTTCTGTAACACACTTCATTCAGCTGATCTGGCCTGATAATGAGATGATGAGCTGGAACAGGTGTTTtaggagcaggaaaaacactaatCAGTACTGCGTTATGTTCACTGTTAACTTTTCTCAAAGGACTGTTGCTGGAATGATGGAGGTCAGACACAAACATTGTTCGAACCTCCACAGACAATGGATCATCCCTTAGAAAAATGGACTGGACTGACAGCTTGTGTACTGGACTATTTCTCTAAATGACACTTTGTATTATTCATGTTTAAATCACACTAACATTTCCCCCCACACCCTGTTGCAAATGCAgcatttcatatatttcaaCCTTTCACATTCTTGAGTTTAATGGTGGTGTTCCTGTCAATCGTTTGTCTTTCCAAACTGCTGGTCTGGTCCATGAATTACTGTCTTCATGCCGTAAACCACAACGTGCTGATCTGACAGCTAACGCTGAACATCATGTGACTGGCAGAAAGAGGAAATCTAAAGCCACTGGCCACTGGCTGAATTCTAGCTGTGCTAATAAAGTATTTATATGCTGGAGTGCAAACAGAACCCTGCTCACAGCTGTTATGTTACCTGGCTTCTATGAAAAGCTTTAGAGTTGTGTTTGtctaatgctaaaaaaaaatcagaaacagaATTCTtgattaatagtaataataataaaacccaaCCAAACGATACCTATTGCGAAAAAGACATATATTACACTAATATTTTCTTTAGTATTATTCTGTCCCCTGATACATCTCCATGCTCCATCAAGTGCACTTAGTAAATGTCAGGTGAATAGGAATGTACAGTTCCATTCACTGGTAAAGCATACTGATCTGAACTGAAATAGGGCCTTGAAACTATATAGGTATGCTAGACAAACTGTTTAAATTAGTCATTTGTATTGAATCCACAggtaataaggaataaaacactttagaatgtgctgatataggaaaataaataatgacaggATGGAGCAATGCAGCtcacagttgattattttcctataactgcactttctaaaaagttttatttctcttataccacagcaatttgccaatgattatacTTTGCTCTTAATTAAAACATGATGTGTAGTACTTTTTTTATAGTTAAATGTTTatagtacatttaatgttgtggaacacccagtaaacaagttagttcctgttatcaattaCATTATAACAACTACAAATTCATATATAGTCATTtcttcaccaacctctctttttttatctgtctcttgaagctaataagacaaaatacagcttgtcctgttatagaaaaagtGGAAaggtcct

Function

GO: NA

KEGG:

id description
K04358 FGF; fibroblast growth factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215642 lncRNA upstream 170307 16006054 ~ 16009235 (+) True G182190
TU215562 lncRNA upstream 189132 15988630 ~ 15990410 (+) True G182116
TU215560 lncRNA upstream 191561 15938100 ~ 15987981 (+) True G182115
TU215618 lncRNA upstream 286015 15893292 ~ 15893527 (+) True G182167
TU215602 lncRNA upstream 293717 15879531 ~ 15885825 (+) True G182152
TU215985 lncRNA downstream 52238 16260058 ~ 16260316 (+) True G182483
XR_004579080.1 lncRNA downstream 500805 16708625 ~ 16720748 (+) False LOC117598408
TU216395 lncRNA downstream 505893 16713713 ~ 16725527 (+) True LOC117598408
XR_004579047.1 lncRNA downstream 644588 16852408 ~ 16857137 (+) True LOC117598387
TU216484 lncRNA downstream 752839 16960659 ~ 16961299 (+) True G182906
XM_026927396.2 mRNA upstream 57433 16087204 ~ 16122109 (+) True hcn2b
XM_034308630.1 mRNA upstream 94409 16074562 ~ 16085133 (+) False bsg
XM_026913508.2 mRNA upstream 94409 16074565 ~ 16085133 (+) True bsg
XM_026947079.2 mRNA upstream 116432 16056916 ~ 16063110 (+) True fstl3
XM_026946320.2 mRNA upstream 116432 16056924 ~ 16063110 (+) False fstl3
XM_026933795.2 mRNA downstream 3526 16211346 ~ 16233837 (+) False LOC113538485
XM_026933710.2 mRNA downstream 3527 16211347 ~ 16233837 (+) True LOC113538485
XM_026933882.2 mRNA downstream 3537 16211357 ~ 16233837 (+) False LOC113538485
XM_026933632.2 mRNA downstream 21918 16229738 ~ 16233837 (+) False LOC113538485
XM_034308470.1 mRNA downstream 39907 16247727 ~ 16249191 (+) True LOC113538695
XR_004579090.1 other upstream 1467815 14708927 ~ 14711727 (+) False pdzk1ip1
XR_004579085.1 other upstream 1532720 14622543 ~ 14646822 (+) True si:dkey-121a11.3
TU214729 other upstream 1584927 14589919 ~ 14594615 (+) False ankrd29
TU214656 other upstream 1616576 14561690 ~ 14562966 (+) False LOC113540185
TU214440 other upstream 2005324 14165026 ~ 14174218 (+) True G181175
TU215983 other downstream 47243 16255063 ~ 16255852 (+) False LOC113532318
XR_003403746.1 other downstream 372416 16580236 ~ 16580303 (+) True LOC113537281
TU216336 other downstream 375483 16583303 ~ 16584943 (+) True G182819
TU216450 other downstream 705438 16913258 ~ 16922922 (+) True G182877
trnak-cuu_26 other downstream 822052 17029872 ~ 17029944 (+) True trnak-cuu_26

Expression Profile